Wall clock time and date at job start Tue Mar 31 2020 15:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38256 * 120.00443 * 2 1 4 4 C 1.38211 * 120.00286 * 180.25731 * 3 2 1 5 5 C 1.38257 * 119.99886 * 359.49444 * 4 3 2 6 6 N 1.48020 * 120.00122 * 180.27365 * 5 4 3 7 7 O 1.21796 * 119.99777 * 0.02562 * 6 5 4 8 8 O 1.21795 * 120.00137 * 179.97438 * 6 5 4 9 9 C 1.38210 * 120.00048 * 0.25359 * 5 4 3 10 10 C 1.38217 * 119.99869 * 179.77317 * 2 1 3 11 11 S 1.76198 * 119.99801 * 359.97438 * 10 2 1 12 12 O 1.42094 * 106.40554 * 48.70506 * 11 10 2 13 13 O 1.42108 * 106.40023 * 181.62062 * 11 10 2 14 14 N 1.65599 * 107.22049 * 295.15997 * 11 10 2 15 15 C 1.46507 * 119.99759 * 98.52367 * 14 11 10 16 16 C 1.46495 * 120.00086 * 278.52690 * 14 11 10 17 17 H 1.09001 * 109.47420 * 0.02562 * 16 14 11 18 18 C 1.52997 * 109.47085 * 239.99551 * 16 14 11 19 19 C 1.50709 * 109.47058 * 119.99950 * 16 14 11 20 20 H 1.08000 * 119.99618 * 359.97438 * 19 16 14 21 21 C 1.37875 * 119.99824 * 180.02562 * 19 16 14 22 22 N 1.31510 * 120.00343 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 119.99696 * 179.97438 * 21 19 16 24 24 H 1.48508 * 109.47084 * 89.99833 * 23 21 19 25 25 H 1.48499 * 109.47043 * 209.99467 * 23 21 19 26 26 H 1.48501 * 109.47451 * 329.99912 * 23 21 19 27 27 H 1.09007 * 109.47037 * 264.32562 * 1 2 3 28 28 H 1.09000 * 109.47362 * 24.32098 * 1 2 3 29 29 H 1.08999 * 109.47699 * 144.32702 * 1 2 3 30 30 H 1.08004 * 119.99567 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.00089 * 179.76381 * 4 3 2 32 32 H 1.07996 * 120.00398 * 180.02562 * 9 5 4 33 33 H 1.08999 * 109.46714 * 95.21944 * 15 14 11 34 34 H 1.08999 * 109.46843 * 215.22398 * 15 14 11 35 35 H 1.08996 * 109.46823 * 335.22254 * 15 14 11 36 36 H 1.08999 * 109.46868 * 60.00101 * 18 16 14 37 37 H 1.09002 * 109.47091 * 180.02562 * 18 16 14 38 38 H 1.09002 * 109.47177 * 299.99869 * 18 16 14 39 39 H 0.96999 * 120.00539 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0054 5 6 4.2717 -0.0001 -0.0002 6 7 5.7519 -0.0002 0.0002 7 8 6.3609 1.0546 -0.0036 8 8 6.3608 -1.0549 0.0052 9 6 3.5806 -1.1970 0.0051 10 6 2.1980 -1.1970 0.0047 11 16 1.3169 -2.7229 0.0115 12 8 0.3368 -2.6249 -1.0127 13 8 2.2964 -3.7516 0.0539 14 7 0.4900 -2.8052 1.4438 15 6 -0.9289 -2.4435 1.4923 16 6 1.1772 -3.2395 2.6625 17 1 2.2187 -3.4638 2.4321 18 6 0.4948 -4.4931 3.2135 19 6 1.1164 -2.1408 3.6922 20 1 0.6163 -1.2118 3.4617 21 6 1.7002 -2.3213 4.9282 22 7 2.3097 -3.4524 5.2087 23 14 1.6255 -0.9592 6.2043 24 1 0.4043 -1.1238 7.0331 25 1 2.8272 -1.0293 7.0740 26 1 1.5856 0.3583 5.5203 27 1 -0.3633 -0.1016 1.0227 28 1 -0.3634 0.9364 -0.4232 29 1 -0.3634 -0.8348 -0.5993 30 1 1.6583 2.1326 0.0004 31 1 4.1205 2.1326 -0.0092 32 1 4.1205 -2.1323 0.0095 33 1 -1.5367 -3.3429 1.3933 34 1 -1.1482 -1.9596 2.4440 35 1 -1.1574 -1.7589 0.6755 36 1 0.5387 -5.2878 2.4687 37 1 1.0058 -4.8161 4.1205 38 1 -0.5466 -4.2684 3.4441 39 1 2.7201 -3.5796 6.0783 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:09 Heat of formation + Delta-G solvation = -59.380801 kcal Electronic energy + Delta-G solvation = -27267.753780 eV Core-core repulsion = 23305.696304 eV Total energy + Delta-G solvation = -3962.057476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.42227 -40.78028 -38.62127 -38.05300 -37.82786 -37.09230 -34.81207 -34.41326 -32.84600 -31.06307 -29.75982 -27.32585 -27.17523 -26.13703 -24.93272 -23.15007 -22.64588 -21.17850 -19.95862 -19.65398 -18.80735 -18.68237 -18.42062 -17.66981 -17.38145 -17.03445 -16.87716 -16.19794 -15.44239 -15.34983 -15.23134 -14.81532 -14.56211 -14.07173 -13.86088 -13.74601 -13.57049 -13.37045 -13.32579 -13.22686 -13.02189 -12.90906 -12.83896 -12.68493 -12.55774 -12.45637 -12.43459 -12.26835 -12.13508 -11.96603 -11.81091 -11.22905 -10.95629 -10.53831 -10.49308 -9.73353 -8.13140 -6.28336 -1.39075 -0.82808 -0.56618 0.09385 0.20518 1.41776 1.43540 1.51254 1.74705 2.00287 2.41445 2.55427 3.05214 3.16342 3.23848 3.36045 3.43940 3.65105 3.82979 4.05663 4.19245 4.32216 4.41600 4.50939 4.58608 4.69849 4.82713 4.90738 4.93457 4.98199 5.00199 5.11290 5.15717 5.27572 5.34072 5.58076 5.63963 5.79302 6.05248 6.23498 6.36358 6.81234 7.42000 8.91385 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010007 B = 0.006286 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.235263 B = 4452.988906 C = 5578.014202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.075 3.925 3 C -0.124 4.124 4 C 0.002 3.998 5 C -0.092 4.092 6 N 0.033 4.967 7 O -0.132 6.132 8 O -0.218 6.218 9 C 0.030 3.970 10 C -0.687 4.687 11 S 2.696 3.304 12 O -0.962 6.962 13 O -0.994 6.994 14 N -0.977 5.977 15 C 0.074 3.926 16 C 0.273 3.727 17 H 0.018 0.982 18 C -0.138 4.138 19 C -0.529 4.529 20 H 0.079 0.921 21 C 0.016 3.984 22 N -0.917 5.917 23 Si 0.952 3.048 24 H -0.271 1.271 25 H -0.296 1.296 26 H -0.262 1.262 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.208 0.792 31 H 0.191 0.809 32 H 0.147 0.853 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.021 0.979 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 12.173 -9.629 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.074 3.926 3 C -0.142 4.142 4 C -0.017 4.017 5 C -0.176 4.176 6 N 0.549 4.451 7 O -0.358 6.358 8 O -0.420 6.420 9 C 0.009 3.991 10 C -0.774 4.774 11 S 2.787 3.213 12 O -0.952 6.952 13 O -0.984 6.984 14 N -0.818 5.818 15 C -0.070 4.070 16 C 0.169 3.831 17 H 0.036 0.964 18 C -0.198 4.198 19 C -0.569 4.569 20 H 0.097 0.903 21 C -0.184 4.184 22 N -0.557 5.557 23 Si 0.778 3.222 24 H -0.196 1.196 25 H -0.223 1.223 26 H -0.187 1.187 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.123 0.877 30 H 0.225 0.775 31 H 0.209 0.791 32 H 0.165 0.835 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.040 0.960 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.685 11.345 -10.161 17.059 hybrid contribution 1.509 0.441 1.294 2.037 sum -6.176 11.786 -8.867 15.990 Atomic orbital electron populations 1.22274 0.87225 1.09058 1.06299 1.20464 0.98659 0.91067 0.82444 1.21825 0.91897 0.99987 1.00500 1.21771 0.95676 0.96737 0.87536 1.21302 0.78448 0.98099 1.19749 1.43741 1.04200 1.00202 0.96925 1.94438 1.69524 1.20474 1.51376 1.94600 1.69629 1.21015 1.56727 1.20686 0.93334 0.98414 0.86638 1.31099 1.04007 1.22719 1.19537 1.01712 0.72891 0.73572 0.73116 1.93482 1.58994 1.87011 1.55713 1.93531 1.62697 1.55186 1.87005 1.57227 1.19585 1.80531 1.24415 1.22007 0.78513 1.01684 1.04792 1.18434 0.90363 0.93343 0.80921 0.96450 1.21930 1.00376 0.96693 1.00826 1.21649 1.35882 1.01335 0.98014 0.90338 1.25682 0.94888 0.97522 1.00315 1.70012 1.36802 1.25821 1.23021 0.85643 0.77344 0.80024 0.79169 1.19645 1.22289 1.18655 0.86691 0.84731 0.87698 0.77477 0.79142 0.83530 0.92275 0.89660 0.88207 0.96012 0.91348 0.93057 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 7.88 71.23 0.56 -2.68 16 2 C 0.08 1.73 5.87 -19.87 -0.12 1.61 16 3 C -0.12 -2.09 9.68 22.27 0.22 -1.88 16 4 C 0.00 0.03 9.56 22.27 0.21 0.25 16 5 C -0.09 -2.82 6.85 36.37 0.25 -2.57 16 6 N 0.03 1.14 4.45 -46.46 -0.21 0.93 16 7 O -0.13 -4.13 18.45 18.89 0.35 -3.78 16 8 O -0.22 -8.49 18.45 18.89 0.35 -8.14 16 9 C 0.03 1.03 9.06 22.27 0.20 1.24 16 10 C -0.69 -21.83 5.91 22.27 0.13 -21.70 16 11 S 2.70 97.22 5.03 -56.49 -0.28 96.93 16 12 O -0.96 -32.36 14.38 -128.00 -1.84 -34.20 16 13 O -0.99 -44.22 15.83 -128.00 -2.03 -46.25 16 14 N -0.98 -35.51 3.01 -520.44 -1.57 -37.08 16 15 C 0.07 2.04 8.14 127.77 1.04 3.08 16 16 C 0.27 12.56 2.59 44.25 0.11 12.68 16 17 H 0.02 0.94 7.16 -2.39 -0.02 0.92 16 18 C -0.14 -6.26 8.97 71.98 0.65 -5.62 16 19 C -0.53 -25.02 8.03 25.60 0.21 -24.81 16 20 H 0.08 3.38 7.25 -2.91 -0.02 3.36 16 21 C 0.02 0.80 5.30 84.65 0.45 1.25 16 22 N -0.92 -50.03 11.32 21.45 0.24 -49.79 16 23 Si 0.95 39.77 29.54 68.60 2.03 41.79 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.30 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 27 H 0.12 1.87 6.56 -2.38 -0.02 1.85 16 28 H 0.13 1.08 8.05 -2.39 -0.02 1.06 16 29 H 0.10 2.08 4.02 -2.39 -0.01 2.07 16 30 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.19 2.68 7.61 -2.91 -0.02 2.66 16 32 H 0.15 5.61 6.89 -2.91 -0.02 5.59 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 2.31 6.96 -2.39 -0.02 2.29 16 35 H 0.10 2.08 4.10 -2.39 -0.01 2.07 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 38 H 0.05 2.09 7.67 -2.39 -0.02 2.07 16 39 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -68.66 334.61 2.06 -66.60 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 1.10 Total: 12.13 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 3.91 Total: -39.15 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.53 Total: -85.94 kcal Atomic # 8 Polarization: -89.20 SS G_CDS: -3.17 Total: -92.37 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: 97.22 SS G_CDS: -0.28 Total: 96.93 kcal Total: -68.66 2.06 -66.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.220 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds