Wall clock time and date at job start Tue Mar 31 2020 15:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99940 * 2 1 4 4 C 1.38212 * 119.99651 * 179.83854 * 3 2 1 5 5 C 1.38259 * 120.00270 * 0.39001 * 4 3 2 6 6 S 1.76195 * 120.00018 * 179.81408 * 5 4 3 7 7 O 1.42106 * 106.40106 * 156.18845 * 6 5 4 8 8 O 1.42098 * 106.40281 * 23.26895 * 6 5 4 9 9 N 1.65596 * 107.22035 * 269.72718 * 6 5 4 10 10 C 1.46501 * 120.00190 * 270.00289 * 9 6 5 11 11 C 1.46506 * 120.00167 * 89.99655 * 9 6 5 12 12 H 1.09006 * 109.46660 * 0.02562 * 11 9 6 13 13 C 1.52994 * 109.47501 * 240.00595 * 11 9 6 14 14 C 1.50703 * 109.46710 * 120.00023 * 11 9 6 15 15 H 1.07998 * 120.00117 * 5.72381 * 14 11 9 16 16 C 1.37883 * 119.99489 * 185.72101 * 14 11 9 17 17 N 1.31512 * 120.00314 * 9.80643 * 16 14 11 18 18 Si 1.86794 * 119.99694 * 189.80860 * 16 14 11 19 19 H 1.48498 * 109.47569 * 84.99125 * 18 16 14 20 20 H 1.48499 * 109.47122 * 204.99206 * 18 16 14 21 21 H 1.48501 * 109.46997 * 324.98838 * 18 16 14 22 22 C 1.38214 * 119.99512 * 359.54021 * 5 4 3 23 23 C 1.38221 * 119.99620 * 179.97438 * 2 1 3 24 24 N 1.48010 * 120.00071 * 0.02562 * 23 2 1 25 25 O 1.21805 * 119.99963 * 173.51116 * 24 23 2 26 26 O 1.21802 * 120.00318 * 353.51305 * 24 23 2 27 27 H 1.08999 * 109.46939 * 263.82031 * 1 2 3 28 28 H 1.08991 * 109.47129 * 23.82600 * 1 2 3 29 29 H 1.09002 * 109.47165 * 143.82576 * 1 2 3 30 30 H 1.08000 * 120.00016 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.99739 * 180.20786 * 4 3 2 32 32 H 1.08997 * 109.46953 * 89.99703 * 10 9 6 33 33 H 1.08993 * 109.46896 * 209.99536 * 10 9 6 34 34 H 1.08993 * 109.46929 * 329.99630 * 10 9 6 35 35 H 1.09003 * 109.47327 * 182.92980 * 13 11 9 36 36 H 1.08997 * 109.47153 * 302.92776 * 13 11 9 37 37 H 1.09003 * 109.47328 * 62.93112 * 13 11 9 38 38 H 0.96994 * 120.00180 * 180.02562 * 17 16 14 39 39 H 1.08007 * 119.99435 * 180.24844 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0034 5 6 4.2718 -0.0001 -0.0014 6 16 6.0337 -0.0001 -0.0021 7 8 6.4352 -1.2493 0.5435 8 8 6.4352 1.2502 0.5410 9 7 6.5234 -0.0016 -1.5840 10 6 6.7399 -1.2710 -2.2825 11 6 6.7399 1.2664 -2.2850 12 1 6.5308 2.0956 -1.6090 13 6 5.8066 1.3463 -3.4947 14 6 8.1716 1.3458 -2.7489 15 1 8.8273 0.4967 -2.6246 16 6 8.6441 2.5024 -3.3320 17 7 7.9134 3.5956 -3.3108 18 14 10.3223 2.5165 -4.1522 19 1 10.1941 2.0329 -5.5504 20 1 10.8605 3.9006 -4.1546 21 1 11.2466 1.6274 -3.4036 22 6 3.5806 -1.1970 0.0001 23 6 2.1981 -1.1971 0.0005 24 7 1.4580 -2.4788 0.0005 25 8 2.0612 -3.5304 -0.1182 26 8 0.2458 -2.4822 0.1192 27 1 -0.3633 -0.1106 1.0217 28 1 -0.3633 0.9400 -0.4151 29 1 -0.3633 -0.8296 -0.6066 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1326 0.0068 32 1 5.8119 -1.5861 -2.7596 33 1 7.5123 -1.1414 -3.0405 34 1 7.0566 -2.0299 -1.5672 35 1 6.0040 2.2658 -4.0458 36 1 5.9801 0.4888 -4.1447 37 1 4.7707 1.3414 -3.1554 38 1 8.2457 4.4091 -3.7214 39 1 4.1207 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:43 Heat of formation + Delta-G solvation = -43.671761 kcal Electronic energy + Delta-G solvation = -26632.696811 eV Core-core repulsion = 22671.320530 eV Total energy + Delta-G solvation = -3961.376280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42108 -39.74230 -36.98399 -36.82333 -36.36329 -35.50803 -33.53655 -32.68682 -32.21262 -29.37560 -28.27180 -26.32317 -25.71395 -25.27039 -23.06955 -22.61152 -20.98961 -19.84533 -18.84225 -18.12438 -17.77466 -17.10507 -17.08352 -16.46169 -16.18251 -15.69419 -15.27357 -14.59090 -14.48314 -14.31623 -13.66834 -13.40356 -13.13362 -12.96864 -12.73136 -12.67845 -12.46376 -12.19932 -12.01472 -11.72615 -11.63682 -11.55566 -11.34036 -11.30653 -11.11015 -11.05069 -10.92014 -10.80974 -10.58680 -10.45000 -10.15770 -9.96563 -9.67154 -9.47919 -8.53597 -8.19918 -6.21420 -4.24666 -0.34981 0.26109 0.69345 1.12693 1.21884 2.73855 3.22476 3.29823 3.32083 3.43217 3.96438 3.97874 4.10463 4.30233 4.33763 4.51429 4.64408 4.98529 4.99900 5.11894 5.12243 5.18949 5.32065 5.53950 5.54991 5.62596 5.69739 5.92013 5.95532 6.18156 6.32666 6.46570 6.55816 6.58967 6.79016 7.16124 7.44256 7.50970 7.58186 7.81376 8.10260 8.76651 9.40060 10.86641 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003771 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.106326 B = 7422.903848 C = 7748.255799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 C -0.143 4.143 4 C 0.038 3.962 5 C -0.681 4.681 6 S 2.681 3.319 7 O -0.964 6.964 8 O -0.939 6.939 9 N -0.973 5.973 10 C 0.089 3.911 11 C 0.263 3.737 12 H 0.068 0.932 13 C -0.144 4.144 14 C -0.526 4.526 15 H 0.066 0.934 16 C 0.068 3.932 17 N -0.886 5.886 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.048 3.952 23 C -0.074 4.074 24 N 0.035 4.965 25 O -0.161 6.161 26 O -0.161 6.161 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.039 0.961 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.012 0.988 38 H 0.265 0.735 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 -4.732 4.210 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.024 3.976 3 C -0.162 4.162 4 C 0.019 3.981 5 C -0.763 4.763 6 S 2.766 3.234 7 O -0.954 6.954 8 O -0.929 6.929 9 N -0.814 5.814 10 C -0.057 4.057 11 C 0.161 3.839 12 H 0.086 0.914 13 C -0.203 4.203 14 C -0.565 4.565 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.724 3.276 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.028 3.972 23 C -0.158 4.158 24 N 0.552 4.448 25 O -0.376 6.376 26 O -0.375 6.375 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.075 0.925 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.128 -3.939 4.895 13.659 hybrid contribution -0.043 -0.187 -0.879 0.900 sum -12.172 -4.126 4.016 13.465 Atomic orbital electron populations 1.21429 0.88132 1.05044 1.04879 1.20151 0.98217 0.90628 0.88618 1.21323 0.94194 0.97430 1.03245 1.21517 0.94610 0.97981 0.84028 1.31947 1.30599 0.97474 1.16299 1.02624 0.72988 0.73739 0.74001 1.93536 1.80236 1.44221 1.77437 1.93611 1.79410 1.43088 1.76826 1.57433 1.79178 1.14188 1.30603 1.21450 1.01507 0.84103 0.98605 1.18880 0.95823 0.78506 0.90740 0.91399 1.22080 0.95649 1.02342 1.00250 1.21245 0.95309 0.99813 1.40179 0.91577 1.24907 0.97707 0.94965 0.95981 1.69928 1.38321 1.00573 1.43490 0.86535 0.83780 0.77377 0.79915 1.20458 1.21165 1.19764 1.20750 0.91195 0.99467 0.85782 1.21007 0.92518 0.83595 1.18715 1.43482 1.01039 1.02663 0.97594 1.94574 1.70087 1.19730 1.53227 1.94444 0.96262 1.93683 1.53092 0.88815 0.90280 0.87963 0.82664 0.81943 0.94196 0.89126 0.91279 0.90406 0.94280 0.96871 0.92518 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.71 36.01 0.31 -0.83 16 2 C 0.03 0.28 5.88 -104.62 -0.62 -0.34 16 3 C -0.14 -1.46 9.68 -39.58 -0.38 -1.84 16 4 C 0.04 0.48 9.52 -39.58 -0.38 0.10 16 5 C -0.68 -9.96 5.97 -39.58 -0.24 -10.19 16 6 S 2.68 48.04 5.69 -107.50 -0.61 47.43 16 7 O -0.96 -18.18 15.89 -57.17 -0.91 -19.09 16 8 O -0.94 -19.55 15.84 -57.17 -0.91 -20.46 16 9 N -0.97 -18.45 3.06 -115.85 -0.35 -18.81 16 10 C 0.09 1.45 9.59 59.85 0.57 2.02 16 11 C 0.26 5.88 2.49 -69.08 -0.17 5.71 16 12 H 0.07 1.66 6.85 -51.93 -0.36 1.31 16 13 C -0.14 -2.95 9.11 37.15 0.34 -2.61 16 14 C -0.53 -13.21 8.01 -34.44 -0.28 -13.49 16 15 H 0.07 1.64 7.15 -52.49 -0.38 1.27 16 16 C 0.07 1.75 5.17 -17.82 -0.09 1.65 16 17 N -0.89 -23.49 12.19 55.43 0.68 -22.82 16 18 Si 0.90 20.06 29.55 -169.99 -5.02 15.04 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.05 0.67 9.03 -39.59 -0.36 0.32 16 23 C -0.07 -0.98 6.83 -79.95 -0.55 -1.53 16 24 N 0.04 0.50 4.45 33.96 0.15 0.65 16 25 O -0.16 -2.44 18.47 -29.46 -0.54 -2.99 16 26 O -0.16 -2.16 15.35 -29.46 -0.45 -2.61 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 29 H 0.10 0.94 5.81 -51.93 -0.30 0.63 16 30 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.16 1.96 7.61 -52.48 -0.40 1.56 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.52 6.91 -51.93 -0.36 1.16 16 34 H 0.07 1.03 7.02 -51.93 -0.36 0.67 16 35 H 0.08 1.77 6.88 -51.93 -0.36 1.41 16 36 H 0.04 0.75 7.57 -51.93 -0.39 0.36 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 39 H 0.17 2.22 7.19 -52.48 -0.38 1.85 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -30.30 343.63 -9.15 -39.45 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.53 Total: 0.04 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.83 Total: -21.03 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.47 Total: -40.98 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -2.81 Total: -45.14 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 48.04 SS G_CDS: -0.61 Total: 47.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.30 -9.15 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.221 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds