Wall clock time and date at job start Tue Mar 31 2020 15:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99940 * 2 1 4 4 C 1.38212 * 119.99651 * 179.83854 * 3 2 1 5 5 C 1.38259 * 120.00270 * 0.39001 * 4 3 2 6 6 S 1.76195 * 120.00018 * 179.81408 * 5 4 3 7 7 O 1.42106 * 106.40106 * 156.18845 * 6 5 4 8 8 O 1.42098 * 106.40281 * 23.26895 * 6 5 4 9 9 N 1.65596 * 107.22035 * 269.72718 * 6 5 4 10 10 C 1.46501 * 120.00190 * 270.00289 * 9 6 5 11 11 C 1.46506 * 120.00167 * 89.99655 * 9 6 5 12 12 H 1.09006 * 109.46660 * 0.02562 * 11 9 6 13 13 C 1.52994 * 109.47501 * 240.00595 * 11 9 6 14 14 C 1.50703 * 109.46710 * 120.00023 * 11 9 6 15 15 H 1.07998 * 120.00117 * 5.72381 * 14 11 9 16 16 C 1.37883 * 119.99489 * 185.72101 * 14 11 9 17 17 N 1.31512 * 120.00314 * 9.80643 * 16 14 11 18 18 Si 1.86794 * 119.99694 * 189.80860 * 16 14 11 19 19 H 1.48498 * 109.47569 * 84.99125 * 18 16 14 20 20 H 1.48499 * 109.47122 * 204.99206 * 18 16 14 21 21 H 1.48501 * 109.46997 * 324.98838 * 18 16 14 22 22 C 1.38214 * 119.99512 * 359.54021 * 5 4 3 23 23 C 1.38221 * 119.99620 * 179.97438 * 2 1 3 24 24 N 1.48010 * 120.00071 * 0.02562 * 23 2 1 25 25 O 1.21805 * 119.99963 * 173.51116 * 24 23 2 26 26 O 1.21802 * 120.00318 * 353.51305 * 24 23 2 27 27 H 1.08999 * 109.46939 * 263.82031 * 1 2 3 28 28 H 1.08991 * 109.47129 * 23.82600 * 1 2 3 29 29 H 1.09002 * 109.47165 * 143.82576 * 1 2 3 30 30 H 1.08000 * 120.00016 * 359.97438 * 3 2 1 31 31 H 1.08006 * 119.99739 * 180.20786 * 4 3 2 32 32 H 1.08997 * 109.46953 * 89.99703 * 10 9 6 33 33 H 1.08993 * 109.46896 * 209.99536 * 10 9 6 34 34 H 1.08993 * 109.46929 * 329.99630 * 10 9 6 35 35 H 1.09003 * 109.47327 * 182.92980 * 13 11 9 36 36 H 1.08997 * 109.47153 * 302.92776 * 13 11 9 37 37 H 1.09003 * 109.47328 * 62.93112 * 13 11 9 38 38 H 0.96994 * 120.00180 * 180.02562 * 17 16 14 39 39 H 1.08007 * 119.99435 * 180.24844 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0034 5 6 4.2718 -0.0001 -0.0014 6 16 6.0337 -0.0001 -0.0021 7 8 6.4352 -1.2493 0.5435 8 8 6.4352 1.2502 0.5410 9 7 6.5234 -0.0016 -1.5840 10 6 6.7399 -1.2710 -2.2825 11 6 6.7399 1.2664 -2.2850 12 1 6.5308 2.0956 -1.6090 13 6 5.8066 1.3463 -3.4947 14 6 8.1716 1.3458 -2.7489 15 1 8.8273 0.4967 -2.6246 16 6 8.6441 2.5024 -3.3320 17 7 7.9134 3.5956 -3.3108 18 14 10.3223 2.5165 -4.1522 19 1 10.1941 2.0329 -5.5504 20 1 10.8605 3.9006 -4.1546 21 1 11.2466 1.6274 -3.4036 22 6 3.5806 -1.1970 0.0001 23 6 2.1981 -1.1971 0.0005 24 7 1.4580 -2.4788 0.0005 25 8 2.0612 -3.5304 -0.1182 26 8 0.2458 -2.4822 0.1192 27 1 -0.3633 -0.1106 1.0217 28 1 -0.3633 0.9400 -0.4151 29 1 -0.3633 -0.8296 -0.6066 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1326 0.0068 32 1 5.8119 -1.5861 -2.7596 33 1 7.5123 -1.1414 -3.0405 34 1 7.0566 -2.0299 -1.5672 35 1 6.0040 2.2658 -4.0458 36 1 5.9801 0.4888 -4.1447 37 1 4.7707 1.3414 -3.1554 38 1 8.2457 4.4091 -3.7214 39 1 4.1207 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095284.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:42 Heat of formation + Delta-G solvation = -62.147571 kcal Electronic energy + Delta-G solvation = -26633.497982 eV Core-core repulsion = 22671.320530 eV Total energy + Delta-G solvation = -3962.177452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.47903 -40.72224 -38.49411 -37.96447 -37.89326 -37.03064 -34.53654 -34.45365 -33.19063 -31.05623 -29.15217 -27.36511 -27.22219 -27.03391 -24.03280 -23.62938 -22.63684 -21.01427 -19.91671 -19.55016 -18.84598 -18.66487 -18.41087 -17.98741 -17.40340 -16.82135 -16.73477 -16.18783 -15.40896 -15.27735 -15.13350 -14.88650 -14.48106 -13.93370 -13.86137 -13.64611 -13.62973 -13.54497 -13.47795 -13.31467 -13.21225 -12.96600 -12.74013 -12.65027 -12.61303 -12.42511 -12.34583 -12.20893 -12.14489 -11.90159 -11.76175 -11.24698 -10.98771 -10.58873 -10.46997 -9.75366 -8.15324 -6.23720 -1.37059 -0.85886 -0.61169 0.10506 0.18494 1.44344 1.46586 1.54312 1.70547 2.08389 2.44563 2.63645 3.00193 3.10689 3.16040 3.31478 3.53753 3.61292 3.83372 4.09318 4.17008 4.22908 4.49296 4.58775 4.61574 4.70560 4.71506 4.88235 4.92590 4.94066 4.95573 5.03860 5.07433 5.19116 5.39562 5.54968 5.63497 5.81975 6.02100 6.25164 6.42744 6.82744 7.43634 8.91801 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.003771 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.106326 B = 7422.903848 C = 7748.255799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.036 3.964 3 C -0.125 4.125 4 C 0.027 3.973 5 C -0.685 4.685 6 S 2.693 3.307 7 O -0.981 6.981 8 O -0.976 6.976 9 N -0.983 5.983 10 C 0.084 3.916 11 C 0.267 3.733 12 H 0.042 0.958 13 C -0.132 4.132 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.024 3.976 17 N -0.911 5.911 18 Si 0.950 3.050 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.041 3.959 23 C -0.086 4.086 24 N 0.035 4.965 25 O -0.209 6.209 26 O -0.129 6.129 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.200 0.800 31 H 0.166 0.834 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.265 0.735 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -4.387 3.983 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.035 3.965 3 C -0.144 4.144 4 C 0.008 3.992 5 C -0.772 4.772 6 S 2.784 3.216 7 O -0.972 6.972 8 O -0.967 6.967 9 N -0.823 5.823 10 C -0.061 4.061 11 C 0.164 3.836 12 H 0.060 0.940 13 C -0.192 4.192 14 C -0.581 4.581 15 H 0.079 0.921 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.776 3.224 19 H -0.195 1.195 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.171 4.171 24 N 0.550 4.450 25 O -0.412 6.412 26 O -0.353 6.353 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.217 0.783 31 H 0.183 0.817 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.350 -3.685 4.644 15.527 hybrid contribution 0.472 -0.274 -0.721 0.904 sum -13.878 -3.959 3.923 14.956 Atomic orbital electron populations 1.21572 0.85637 1.06562 1.05752 1.20628 0.99910 0.89698 0.86300 1.21763 0.92922 0.98880 1.00816 1.21744 0.96122 0.97222 0.84126 1.31187 1.27870 0.98812 1.19361 1.01743 0.74013 0.72587 0.73210 1.93507 1.81539 1.44561 1.77545 1.93561 1.81086 1.44540 1.77481 1.57281 1.80466 1.13935 1.30624 1.21613 1.02676 0.83200 0.98657 1.18575 0.94926 0.79189 0.90947 0.93988 1.21892 0.96661 1.01384 0.99222 1.21603 0.96873 0.99598 1.40029 0.92098 1.25570 1.00678 0.94828 0.96605 1.70019 1.39698 1.00920 1.44350 0.85696 0.80287 0.77102 0.79322 1.19549 1.21202 1.19867 1.20706 0.91941 0.99086 0.86226 1.21150 0.92324 0.83922 1.19692 1.43603 1.01101 1.02863 0.97439 1.94593 1.70286 1.20343 1.55937 1.94414 0.96214 1.93711 1.50948 0.87325 0.87047 0.88738 0.78268 0.81696 0.91615 0.89970 0.90417 0.92841 0.93381 0.94334 0.92565 0.81922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.71 71.24 0.62 -1.00 16 2 C 0.04 0.66 5.88 -19.86 -0.12 0.54 16 3 C -0.13 -2.05 9.68 22.27 0.22 -1.84 16 4 C 0.03 0.63 9.52 22.27 0.21 0.85 16 5 C -0.69 -19.53 5.97 22.27 0.13 -19.40 16 6 S 2.69 98.17 5.69 -56.49 -0.32 97.85 16 7 O -0.98 -37.76 15.89 -128.00 -2.03 -39.80 16 8 O -0.98 -41.92 15.84 -128.00 -2.03 -43.94 16 9 N -0.98 -37.57 3.06 -520.45 -1.59 -39.17 16 10 C 0.08 2.69 9.59 127.77 1.23 3.92 16 11 C 0.27 12.11 2.49 44.24 0.11 12.22 16 12 H 0.04 2.12 6.85 -2.38 -0.02 2.11 16 13 C -0.13 -5.36 9.11 71.98 0.66 -4.70 16 14 C -0.54 -27.63 8.01 25.60 0.21 -27.42 16 15 H 0.06 3.08 7.15 -2.91 -0.02 3.06 16 16 C 0.02 1.24 5.17 84.66 0.44 1.68 16 17 N -0.91 -49.05 12.19 21.45 0.26 -48.79 16 18 Si 0.95 41.40 29.55 68.60 2.03 43.43 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 C 0.04 1.11 9.03 22.27 0.20 1.31 16 23 C -0.09 -2.12 6.83 36.38 0.25 -1.87 16 24 N 0.03 0.93 4.45 -46.47 -0.21 0.72 16 25 O -0.21 -6.32 18.47 18.88 0.35 -5.97 16 26 O -0.13 -3.12 15.35 18.88 0.29 -2.83 16 27 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 0.65 8.04 -2.39 -0.02 0.63 16 29 H 0.09 1.33 5.81 -2.39 -0.01 1.32 16 30 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.17 3.79 7.61 -2.91 -0.02 3.77 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.76 6.91 -2.39 -0.02 2.75 16 34 H 0.08 2.33 7.02 -2.39 -0.02 2.32 16 35 H 0.05 2.43 6.88 -2.39 -0.02 2.42 16 36 H 0.05 1.82 7.57 -2.39 -0.02 1.80 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 39 H 0.16 4.43 7.19 -2.91 -0.02 4.40 16 Total: -1.00 -66.67 343.63 1.98 -64.69 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 1.09 Total: 9.53 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 4.15 Total: -35.72 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.54 Total: -87.24 kcal Atomic # 8 Polarization: -89.12 SS G_CDS: -3.42 Total: -92.54 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 98.17 SS G_CDS: -0.32 Total: 97.85 kcal Total: -66.67 1.98 -64.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095284.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.542 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds