Wall clock time and date at job start Tue Mar 31 2020 16:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47095 * 2 1 4 4 C 1.50694 * 109.47450 * 120.00401 * 2 1 3 5 5 H 1.08003 * 120.00441 * 119.99913 * 4 2 1 6 6 C 1.37884 * 119.99898 * 299.99771 * 4 2 1 7 7 N 1.31519 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46875 * 120.00417 * 8 6 4 11 11 H 1.48499 * 109.46993 * 239.99990 * 8 6 4 12 12 N 1.46901 * 109.47043 * 240.00104 * 2 1 3 13 13 C 1.46901 * 111.00027 * 183.95064 * 12 2 1 14 14 C 1.39680 * 110.99787 * 59.99850 * 12 2 1 15 15 C 1.38932 * 120.07249 * 59.95465 * 14 12 2 16 16 C 1.38087 * 119.92201 * 179.97438 * 15 14 12 17 17 C 1.38307 * 120.07528 * 0.04786 * 16 15 14 18 18 S 1.76203 * 119.92482 * 179.97438 * 17 16 15 19 19 C 1.81394 * 104.44920 * 269.98042 * 18 17 16 20 20 O 1.42100 * 104.27464 * 26.04978 * 18 17 16 21 21 O 1.42098 * 104.27394 * 153.90550 * 18 17 16 22 22 C 1.38260 * 120.15013 * 359.97438 * 17 16 15 23 23 C 1.38125 * 120.07750 * 359.97438 * 22 17 16 24 24 N 1.47998 * 120.04288 * 179.72434 * 23 22 17 25 25 O 1.21805 * 119.99771 * 0.02562 * 24 23 22 26 26 O 1.21802 * 120.00627 * 179.97438 * 24 23 22 27 27 H 1.08995 * 109.47342 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47095 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46845 * 299.99303 * 1 2 3 30 30 H 0.96994 * 120.00322 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46935 * 296.04782 * 13 12 2 32 32 H 1.08997 * 109.47151 * 56.04629 * 13 12 2 33 33 H 1.08995 * 109.47179 * 176.05093 * 13 12 2 34 34 H 1.08001 * 120.04215 * 0.02562 * 15 14 12 35 35 H 1.08001 * 119.96076 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47634 * 59.99753 * 19 18 17 37 37 H 1.09004 * 109.47004 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46892 * 299.99588 * 19 18 17 39 39 H 1.07995 * 119.96563 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.1466 -2.2871 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5717 -0.0591 -2.3610 15 6 1.9092 1.2663 -2.6056 16 6 1.4651 1.8893 -3.7552 17 6 0.6844 1.1957 -4.6620 18 16 0.1194 1.9947 -6.1273 19 6 -1.4738 2.7247 -5.6591 20 8 1.0829 3.0116 -6.3657 21 8 -0.0709 0.9341 -7.0536 22 6 0.3464 -0.1232 -4.4214 23 6 0.7881 -0.7528 -3.2741 24 7 0.4207 -2.1627 -3.0144 25 8 -0.2712 -2.7688 -3.8129 26 8 0.8109 -2.7174 -2.0026 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7082 1.1608 3.4844 31 1 3.9192 0.2045 -1.2301 32 1 3.8070 -1.2914 -0.2720 33 1 3.8164 -1.3720 -2.0501 34 1 2.5189 1.8084 -1.8979 35 1 1.7275 2.9194 -3.9461 36 1 -1.3241 3.4309 -4.8424 37 1 -1.9009 3.2452 -6.5164 38 1 -2.1542 1.9361 -5.3374 39 1 -0.2630 -0.6620 -5.1318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:10 Heat of formation + Delta-G solvation = -15.903929 kcal Electronic energy + Delta-G solvation = -26824.110169 eV Core-core repulsion = 22863.937992 eV Total energy + Delta-G solvation = -3960.172177 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.74008 -39.89219 -37.42703 -37.06004 -36.24585 -35.83403 -33.19222 -32.00859 -30.61330 -29.83061 -29.39737 -26.44054 -25.62721 -24.67170 -23.01775 -22.29359 -20.20428 -19.81984 -18.67404 -18.14358 -17.02879 -16.97608 -16.73631 -16.50791 -16.21997 -15.97935 -15.30710 -15.19289 -14.48068 -14.08843 -13.81482 -13.57368 -13.44657 -13.17786 -13.05084 -12.53924 -12.48256 -12.39414 -12.17889 -11.97909 -11.48627 -11.29302 -11.23014 -11.03467 -10.98207 -10.83812 -10.61617 -10.52681 -10.47259 -10.39450 -10.22336 -9.70299 -9.32939 -9.21470 -8.62999 -7.79013 -6.20852 -4.25784 -0.31189 0.08069 0.48991 1.61219 1.81816 2.48443 2.99300 3.21432 3.30391 3.34952 3.57254 3.77195 3.97498 4.31007 4.39632 4.41520 4.53225 4.61077 4.81068 5.01876 5.13503 5.20738 5.28539 5.34187 5.52497 5.77781 5.80697 5.96174 6.16451 6.42494 6.47275 6.71290 6.73780 6.85863 7.07792 7.35400 7.60447 7.73202 7.99047 8.20994 8.23355 8.78877 9.40015 10.86428 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003855 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.924587 B = 7262.490418 C = 7917.145129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.221 3.779 3 H 0.010 0.990 4 C -0.505 4.505 5 H 0.072 0.928 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.903 3.097 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.507 5.507 13 C 0.043 3.957 14 C 0.245 3.755 15 C -0.174 4.174 16 C 0.026 3.974 17 C -0.686 4.686 18 S 2.509 3.491 19 C -0.649 4.649 20 O -0.934 6.934 21 O -0.933 6.933 22 C 0.041 3.959 23 C -0.058 4.058 24 N 0.028 4.972 25 O -0.216 6.216 26 O -0.071 6.071 27 H -0.003 1.003 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.262 0.738 31 H 0.024 0.976 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 6.008 -13.901 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.118 3.882 3 H 0.027 0.973 4 C -0.543 4.543 5 H 0.090 0.910 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.230 5.230 13 C -0.103 4.103 14 C 0.148 3.852 15 C -0.196 4.196 16 C 0.007 3.993 17 C -0.772 4.772 18 S 2.687 3.313 19 C -0.800 4.800 20 O -0.931 6.931 21 O -0.930 6.930 22 C 0.021 3.979 23 C -0.143 4.143 24 N 0.551 4.449 25 O -0.414 6.414 26 O -0.308 6.308 27 H 0.016 0.984 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.998 6.321 -14.755 16.176 hybrid contribution 0.055 -0.008 1.868 1.868 sum -1.943 6.313 -12.887 14.481 Atomic orbital electron populations 1.21906 0.97425 1.00372 0.99883 1.19499 0.92547 0.91953 0.84200 0.97278 1.21086 1.31639 1.12675 0.88913 0.90993 1.24921 0.94924 0.94987 0.99193 1.69875 1.36584 1.23005 1.23779 0.86355 0.78682 0.79605 0.82326 1.19432 1.21121 1.20879 1.60353 1.11378 1.51359 0.99922 1.22326 0.84737 0.99815 1.03426 1.19331 0.85867 0.89993 0.90000 1.22115 1.03443 0.95113 0.98928 1.21164 0.88304 0.99800 0.90079 1.30575 1.17413 1.05085 1.24128 1.05044 0.77187 0.75033 0.74012 1.30223 1.22137 1.14323 1.13269 1.93594 1.57160 1.59044 1.83322 1.93607 1.86601 1.54295 1.58510 1.20630 0.91938 0.92259 0.93096 1.21291 1.08960 0.84326 0.99744 1.43255 0.99164 1.02222 1.00280 1.94487 1.37448 1.65517 1.43949 1.94700 1.53373 1.68158 1.14557 0.98448 0.93862 0.88749 0.92765 0.95779 0.88242 0.93296 0.82865 0.82795 0.84680 0.84763 0.84706 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.85 37.16 0.33 -2.88 16 2 C 0.22 5.06 1.84 -68.87 -0.13 4.93 16 3 H 0.01 0.23 7.12 -51.93 -0.37 -0.14 16 4 C -0.50 -12.73 7.88 -34.44 -0.27 -13.00 16 5 H 0.07 1.82 6.41 -52.48 -0.34 1.48 16 6 C 0.06 1.58 5.30 -17.81 -0.09 1.49 16 7 N -0.89 -23.75 11.32 55.43 0.63 -23.12 16 8 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.51 -10.14 2.49 -172.67 -0.43 -10.57 16 13 C 0.04 0.75 9.11 60.07 0.55 1.30 16 14 C 0.25 4.32 3.30 -83.78 -0.28 4.04 16 15 C -0.17 -2.54 8.57 -39.38 -0.34 -2.88 16 16 C 0.03 0.30 9.46 -39.61 -0.37 -0.07 16 17 C -0.69 -7.85 5.66 -39.55 -0.22 -8.07 16 18 S 2.51 22.13 5.80 -107.50 -0.62 21.51 16 19 C -0.65 -3.18 10.79 101.05 1.09 -2.09 16 20 O -0.93 -10.54 17.12 -57.54 -0.98 -11.53 16 21 O -0.93 -11.19 17.12 -57.54 -0.98 -12.17 16 22 C 0.04 0.57 8.97 -39.61 -0.36 0.21 16 23 C -0.06 -1.00 6.87 -79.76 -0.55 -1.54 16 24 N 0.03 0.54 4.45 34.06 0.15 0.69 16 25 O -0.22 -4.11 18.45 -29.46 -0.54 -4.65 16 26 O -0.07 -1.52 17.10 -29.46 -0.50 -2.02 16 27 H 0.00 -0.08 7.22 -51.93 -0.37 -0.45 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.02 0.39 7.35 -51.93 -0.38 0.00 16 32 H 0.10 1.85 6.10 -51.93 -0.32 1.54 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.15 2.14 7.02 -52.49 -0.37 1.77 16 35 H 0.15 1.32 7.56 -52.49 -0.40 0.92 16 36 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.13 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 39 H 0.17 2.04 7.11 -52.49 -0.37 1.66 16 LS Contribution 342.29 15.07 5.16 5.16 Total: -1.00 -32.95 342.29 -8.28 -41.23 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.48 Total: -1.17 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.64 Total: -18.57 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.35 Total: -33.00 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -3.02 Total: -30.37 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 22.13 SS G_CDS: -0.62 Total: 21.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.95 -8.28 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.322 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds