Wall clock time and date at job start Tue Mar 31 2020 16:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47095 * 2 1 4 4 C 1.50694 * 109.47450 * 120.00401 * 2 1 3 5 5 H 1.08003 * 120.00441 * 119.99913 * 4 2 1 6 6 C 1.37884 * 119.99898 * 299.99771 * 4 2 1 7 7 N 1.31519 * 120.00007 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47242 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46875 * 120.00417 * 8 6 4 11 11 H 1.48499 * 109.46993 * 239.99990 * 8 6 4 12 12 N 1.46901 * 109.47043 * 240.00104 * 2 1 3 13 13 C 1.46901 * 111.00027 * 183.95064 * 12 2 1 14 14 C 1.39680 * 110.99787 * 59.99850 * 12 2 1 15 15 C 1.38932 * 120.07249 * 59.95465 * 14 12 2 16 16 C 1.38087 * 119.92201 * 179.97438 * 15 14 12 17 17 C 1.38307 * 120.07528 * 0.04786 * 16 15 14 18 18 S 1.76203 * 119.92482 * 179.97438 * 17 16 15 19 19 C 1.81394 * 104.44920 * 269.98042 * 18 17 16 20 20 O 1.42100 * 104.27464 * 26.04978 * 18 17 16 21 21 O 1.42098 * 104.27394 * 153.90550 * 18 17 16 22 22 C 1.38260 * 120.15013 * 359.97438 * 17 16 15 23 23 C 1.38125 * 120.07750 * 359.97438 * 22 17 16 24 24 N 1.47998 * 120.04288 * 179.72434 * 23 22 17 25 25 O 1.21805 * 119.99771 * 0.02562 * 24 23 22 26 26 O 1.21802 * 120.00627 * 179.97438 * 24 23 22 27 27 H 1.08995 * 109.47342 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47095 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46845 * 299.99303 * 1 2 3 30 30 H 0.96994 * 120.00322 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46935 * 296.04782 * 13 12 2 32 32 H 1.08997 * 109.47151 * 56.04629 * 13 12 2 33 33 H 1.08995 * 109.47179 * 176.05093 * 13 12 2 34 34 H 1.08001 * 120.04215 * 0.02562 * 15 14 12 35 35 H 1.08001 * 119.96076 * 180.02562 * 16 15 14 36 36 H 1.08998 * 109.47634 * 59.99753 * 19 18 17 37 37 H 1.09004 * 109.47004 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.46892 * 299.99588 * 19 18 17 39 39 H 1.07995 * 119.96563 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3215 -1.1205 4.0079 9 1 3.1466 -2.2871 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5717 -0.0591 -2.3610 15 6 1.9092 1.2663 -2.6056 16 6 1.4651 1.8893 -3.7552 17 6 0.6844 1.1957 -4.6620 18 16 0.1194 1.9947 -6.1273 19 6 -1.4738 2.7247 -5.6591 20 8 1.0829 3.0116 -6.3657 21 8 -0.0709 0.9341 -7.0536 22 6 0.3464 -0.1232 -4.4214 23 6 0.7881 -0.7528 -3.2741 24 7 0.4207 -2.1627 -3.0144 25 8 -0.2712 -2.7688 -3.8129 26 8 0.8109 -2.7174 -2.0026 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.7082 1.1608 3.4844 31 1 3.9192 0.2045 -1.2301 32 1 3.8070 -1.2914 -0.2720 33 1 3.8164 -1.3720 -2.0501 34 1 2.5189 1.8084 -1.8979 35 1 1.7275 2.9194 -3.9461 36 1 -1.3241 3.4309 -4.8424 37 1 -1.9009 3.2452 -6.5164 38 1 -2.1542 1.9361 -5.3374 39 1 -0.2630 -0.6620 -5.1318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:08 Heat of formation + Delta-G solvation = -37.974945 kcal Electronic energy + Delta-G solvation = -26825.067240 eV Core-core repulsion = 22863.937992 eV Total energy + Delta-G solvation = -3961.129248 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -43.16346 -41.19521 -38.45828 -38.22130 -37.34032 -37.04856 -35.00746 -33.20229 -31.96829 -31.08069 -30.26156 -27.94127 -27.20602 -26.25097 -24.41524 -23.55055 -21.79356 -20.95562 -19.70915 -19.41163 -18.50040 -18.45078 -18.00903 -17.47469 -17.25231 -17.19279 -16.83342 -16.29698 -15.83646 -15.61260 -14.89641 -14.74420 -14.36581 -14.10426 -13.94687 -13.88741 -13.62954 -13.48312 -13.20112 -13.06769 -13.04332 -12.83788 -12.68669 -12.52930 -12.42039 -12.28308 -12.17319 -12.10324 -12.08787 -12.04016 -11.81182 -11.10550 -10.84545 -10.60093 -10.50014 -9.32239 -8.17407 -6.27119 -1.24006 -0.98102 -0.60687 0.26208 0.47665 1.41272 1.45629 1.56094 1.71773 1.87772 2.38767 2.69727 2.90865 3.00513 3.13928 3.34914 3.58268 3.67134 3.76307 3.99075 4.13317 4.25564 4.27013 4.40312 4.47049 4.52869 4.60291 4.72853 4.83270 4.86926 4.99878 5.06783 5.08748 5.26150 5.38187 5.61087 5.68389 6.02398 6.12384 6.49999 6.68187 6.82041 7.41319 8.89255 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003855 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.924587 B = 7262.490418 C = 7917.145129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.230 3.770 3 H -0.004 1.004 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.520 5.520 13 C 0.045 3.955 14 C 0.215 3.785 15 C -0.180 4.180 16 C 0.044 3.956 17 C -0.673 4.673 18 S 2.522 3.478 19 C -0.626 4.626 20 O -0.957 6.957 21 O -0.966 6.966 22 C 0.041 3.959 23 C -0.077 4.077 24 N 0.032 4.968 25 O -0.196 6.196 26 O -0.138 6.138 27 H 0.015 0.985 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.263 0.737 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.157 0.843 35 H 0.193 0.807 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.150 0.850 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 8.164 -15.723 17.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 H 0.013 0.987 4 C -0.555 4.555 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.242 5.242 13 C -0.100 4.100 14 C 0.118 3.882 15 C -0.201 4.201 16 C 0.025 3.975 17 C -0.755 4.755 18 S 2.701 3.299 19 C -0.780 4.780 20 O -0.955 6.955 21 O -0.964 6.964 22 C 0.021 3.979 23 C -0.163 4.163 24 N 0.549 4.451 25 O -0.403 6.403 26 O -0.360 6.360 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.211 0.789 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.168 0.832 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.695 8.413 -16.465 18.685 hybrid contribution 0.191 -0.531 2.157 2.230 sum -2.504 7.883 -14.307 16.526 Atomic orbital electron populations 1.21670 0.97900 0.98799 0.99568 1.19176 0.92020 0.91080 0.85066 0.98660 1.21349 1.31419 1.12468 0.90282 0.91852 1.25584 0.95194 0.95641 1.01577 1.69966 1.37465 1.24013 1.24242 0.85494 0.78056 0.78698 0.79325 1.19310 1.20415 1.21072 1.60051 1.12343 1.51856 0.99981 1.22289 0.84062 1.00587 1.03088 1.19382 0.87744 0.91408 0.89687 1.22199 1.03739 0.93890 1.00265 1.21622 0.86283 1.01260 0.88314 1.31169 1.15808 1.04008 1.24501 1.04888 0.78486 0.74010 0.72534 1.30074 1.17610 1.14972 1.15322 1.93565 1.59807 1.58856 1.83225 1.93570 1.87486 1.55991 1.59314 1.20904 0.91757 0.93204 0.92004 1.21474 1.10520 0.82866 1.01405 1.43599 0.98521 1.03244 0.99729 1.94430 1.36374 1.66256 1.43278 1.94712 1.55864 1.69498 1.15879 0.96613 0.95929 0.90936 0.92744 0.94421 0.89966 0.92008 0.82528 0.78943 0.82476 0.81903 0.83191 0.80215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.85 71.98 0.64 -5.16 16 2 C 0.23 10.86 1.84 44.17 0.08 10.95 16 3 H 0.00 -0.20 7.12 -2.38 -0.02 -0.21 16 4 C -0.52 -26.90 7.88 25.60 0.20 -26.70 16 5 H 0.06 3.33 6.41 -2.91 -0.02 3.32 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.92 -49.58 11.32 21.45 0.24 -49.34 16 8 Si 0.96 42.20 29.54 68.60 2.03 44.23 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.52 -21.38 2.49 -700.22 -1.74 -23.12 16 13 C 0.05 1.64 9.11 127.69 1.16 2.81 16 14 C 0.21 7.52 3.30 38.21 0.13 7.65 16 15 C -0.18 -4.97 8.57 22.40 0.19 -4.78 16 16 C 0.04 0.88 9.46 22.25 0.21 1.09 16 17 C -0.67 -13.28 5.66 22.29 0.13 -13.16 16 18 S 2.52 35.10 5.80 -56.49 -0.33 34.77 16 19 C -0.63 -2.59 10.79 113.37 1.22 -1.36 16 20 O -0.96 -18.15 17.12 -127.65 -2.19 -20.33 16 21 O -0.97 -20.56 17.12 -127.65 -2.19 -22.75 16 22 C 0.04 1.06 8.97 22.25 0.20 1.26 16 23 C -0.08 -2.63 6.87 36.51 0.25 -2.38 16 24 N 0.03 1.27 4.45 -46.17 -0.21 1.07 16 25 O -0.20 -7.46 18.45 18.88 0.35 -7.11 16 26 O -0.14 -6.22 17.10 18.88 0.32 -5.89 16 27 H 0.01 0.65 7.22 -2.39 -0.02 0.63 16 28 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 30 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 31 H 0.04 1.23 7.35 -2.38 -0.02 1.21 16 32 H 0.08 3.22 6.10 -2.39 -0.01 3.20 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.16 4.18 7.02 -2.91 -0.02 4.16 16 35 H 0.19 2.38 7.56 -2.91 -0.02 2.36 16 36 H 0.16 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.18 4.04 7.11 -2.91 -0.02 4.02 16 Total: -1.00 -74.26 342.29 2.25 -72.01 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.09 Total: 4.79 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.86 Total: -28.32 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.70 Total: -71.39 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -3.70 Total: -56.08 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 35.10 SS G_CDS: -0.33 Total: 34.77 kcal Total: -74.26 2.25 -72.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.038 kcal (2) G-P(sol) polarization free energy of solvation -74.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds