Wall clock time and date at job start Tue Mar 31 2020 14:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47189 * 270.00099 * 3 2 1 5 5 H 1.48505 * 109.47430 * 30.00111 * 3 2 1 6 6 H 1.48506 * 109.47234 * 150.00156 * 3 2 1 7 7 C 1.37877 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00229 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99920 * 169.99863 * 10 9 7 12 12 C 1.53052 * 109.36800 * 183.18920 * 11 10 9 13 13 N 1.46952 * 109.36421 * 301.60351 * 12 11 10 14 14 C 1.46899 * 110.99951 * 183.18693 * 13 12 11 15 15 C 1.50703 * 109.47107 * 169.99745 * 14 13 12 16 16 C 1.38248 * 120.00188 * 104.99859 * 15 14 13 17 17 C 1.38219 * 120.03913 * 179.97438 * 16 15 14 18 18 C 1.38243 * 120.03919 * 0.02562 * 17 16 15 19 19 C 1.38308 * 120.00140 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 120.02069 * 180.02562 * 19 18 17 21 21 C 1.38308 * 119.99827 * 284.72788 * 15 14 13 22 22 Cl 1.73598 * 120.01968 * 359.97438 * 21 15 14 23 23 C 1.46957 * 110.88258 * 59.31498 * 13 12 11 24 24 C 1.46948 * 111.00364 * 293.79659 * 10 9 7 25 25 H 0.96993 * 119.99951 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47079 * 59.99707 * 9 7 2 27 27 H 1.08998 * 109.46664 * 300.00270 * 9 7 2 28 28 H 1.09004 * 109.49248 * 63.22334 * 11 10 9 29 29 H 1.09002 * 109.48992 * 303.15937 * 11 10 9 30 30 H 1.08999 * 109.48888 * 181.63047 * 12 11 10 31 31 H 1.08999 * 109.48553 * 61.56520 * 12 11 10 32 32 H 1.09002 * 109.47043 * 289.99725 * 14 13 12 33 33 H 1.09001 * 109.47354 * 49.99787 * 14 13 12 34 34 H 1.07999 * 119.97831 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.97772 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.00512 * 180.02562 * 18 17 16 37 37 H 1.08994 * 109.48679 * 60.64784 * 23 13 12 38 38 H 1.09002 * 109.48992 * 180.71260 * 23 13 12 39 39 H 1.09000 * 109.49312 * 296.78406 * 24 10 9 40 40 H 1.09006 * 109.48712 * 56.82499 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5211 -4.8940 0.2388 12 6 2.5566 -6.0187 0.3105 13 7 3.3197 -6.0592 -0.9447 14 6 4.2743 -7.1758 -0.9447 15 6 4.8584 -7.3374 -2.3245 16 6 6.1510 -6.9197 -2.5812 17 6 6.6876 -7.0680 -3.8463 18 6 5.9323 -7.6337 -4.8565 19 6 4.6389 -8.0521 -4.6015 20 17 3.6901 -8.7632 -5.8695 21 6 4.1031 -7.9086 -3.3325 22 17 2.4826 -8.4403 -3.0087 23 6 4.0044 -4.7809 -1.1830 24 6 2.9688 -3.6562 -1.2547 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.8255 -5.0916 -0.5768 29 1 0.9735 -4.8433 1.1799 30 1 2.0487 -6.9717 0.4583 31 1 3.2357 -5.8352 1.1431 32 1 5.0742 -6.9699 -0.2333 33 1 3.7603 -8.0932 -0.6580 34 1 6.7418 -6.4773 -1.7928 35 1 7.6977 -6.7418 -4.0457 36 1 6.3523 -7.7497 -5.8447 37 1 4.6998 -4.5834 -0.3674 38 1 4.5520 -4.8315 -2.1241 39 1 2.2897 -3.8397 -2.0873 40 1 3.4764 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067403541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:42 Heat of formation + Delta-G solvation = 23.356487 kcal Electronic energy + Delta-G solvation = -23321.073633 eV Core-core repulsion = 19801.269374 eV Total energy + Delta-G solvation = -3519.804259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00935 -38.49290 -36.76739 -36.50278 -35.21395 -32.71423 -31.59468 -30.85237 -30.36548 -28.24617 -26.04664 -23.98084 -23.24951 -22.86250 -21.65759 -21.17431 -19.14386 -17.43288 -16.35815 -16.29403 -16.01517 -15.82493 -14.77589 -14.51840 -14.38393 -14.32750 -14.13443 -14.06552 -13.58426 -13.20373 -13.03991 -12.39251 -12.12911 -12.00732 -11.92929 -11.72232 -11.70123 -11.52043 -11.17799 -11.10756 -10.86996 -10.81115 -10.71297 -10.60700 -10.36787 -10.27494 -9.71270 -9.17756 -9.06092 -8.88946 -8.42802 -8.14338 -7.20426 -6.01232 -4.02642 0.74459 0.81171 1.70763 2.12952 3.16194 3.32124 3.38309 3.42236 4.10199 4.31228 4.43310 4.56048 4.82395 4.86122 4.96244 5.00251 5.15987 5.29096 5.34420 5.43586 5.52141 5.58118 5.68957 5.78329 5.84111 5.89960 5.92174 6.05401 6.07818 6.21762 6.31937 6.46232 6.61573 6.71211 7.18509 7.18705 7.37130 7.39971 7.81419 8.11113 8.22954 8.57234 9.04821 9.61486 11.09697 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.003013 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.150619 B = 9289.692053 C = 9585.227327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.064 3.936 13 N -0.528 5.528 14 C 0.091 3.909 15 C -0.055 4.055 16 C -0.099 4.099 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.035 4.035 20 Cl -0.054 7.054 21 C -0.008 4.008 22 Cl -0.036 7.036 23 C 0.058 3.942 24 C 0.069 3.931 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.501 -19.703 -7.549 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.064 4.064 13 N -0.253 5.253 14 C -0.036 4.036 15 C -0.057 4.057 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.123 4.123 19 C -0.062 4.062 20 Cl -0.025 7.025 21 C -0.036 4.036 22 Cl -0.006 7.006 23 C -0.070 4.070 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.080 -19.681 -7.605 24.312 hybrid contribution 0.127 0.891 -0.188 0.919 sum 12.208 -18.790 -7.793 23.724 Atomic orbital electron populations 1.69958 1.06062 1.26740 1.51036 1.24988 0.94849 0.99279 0.95492 0.86519 0.79801 0.83195 0.78019 1.20746 1.21270 1.19807 1.21150 0.93409 0.89979 1.49993 0.91972 1.19691 0.90049 0.87293 0.96090 1.62287 1.28132 1.02751 1.33166 1.22051 0.94741 0.89914 1.00487 1.22143 0.96028 0.98709 0.89486 1.62168 1.24992 1.02776 1.35339 1.21028 0.95059 0.96400 0.91157 1.19699 0.93404 0.97052 0.95509 1.21198 0.94304 0.98689 0.97578 1.21159 1.00296 0.98521 0.92409 1.21019 0.91705 0.98900 1.00637 1.20800 0.93672 1.02839 0.88910 1.98387 1.71983 1.81949 1.50202 1.20615 0.88444 1.01769 0.92821 1.98398 1.18814 1.87971 1.95437 1.22271 0.96179 0.88550 0.99957 1.21958 0.95432 0.97256 0.91324 0.92941 0.99096 0.95255 0.95078 0.91027 0.91136 0.94233 0.93425 0.89427 0.84631 0.84509 0.84297 0.94332 0.91363 0.95348 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.25 8.47 -34.44 -0.29 -14.54 16 8 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 9 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 10 N -0.54 -11.68 4.70 -235.91 -1.11 -12.79 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.02 16 12 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 13 N -0.53 -7.52 4.61 -235.91 -1.09 -8.61 16 14 C 0.09 1.03 4.43 -4.98 -0.02 1.01 16 15 C -0.06 -0.60 4.43 -104.59 -0.46 -1.07 16 16 C -0.10 -0.89 9.03 -39.58 -0.36 -1.25 16 17 C -0.11 -0.83 10.04 -39.59 -0.40 -1.23 16 18 C -0.10 -0.91 9.83 -39.55 -0.39 -1.30 16 19 C -0.03 -0.38 6.32 -39.46 -0.25 -0.63 16 20 Cl -0.05 -0.58 27.96 -51.86 -1.45 -2.03 16 21 C -0.01 -0.10 6.32 -39.46 -0.25 -0.35 16 22 Cl -0.04 -0.45 26.57 -51.86 -1.38 -1.82 16 23 C 0.06 0.91 5.42 -3.77 -0.02 0.89 16 24 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H -0.01 -0.25 8.12 -51.92 -0.42 -0.67 16 27 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.49 7.93 -51.93 -0.41 0.08 16 33 H 0.09 0.94 7.46 -51.93 -0.39 0.56 16 34 H 0.14 1.00 8.00 -52.49 -0.42 0.58 16 35 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 36 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.98 6.71 -51.93 -0.35 0.64 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 1.79 6.79 -51.93 -0.35 1.44 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -30.40 352.41 -12.27 -42.67 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.64 Total: -4.59 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.62 Total: -8.62 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.46 Total: -47.54 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -2.83 Total: -3.85 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.40 -12.27 -42.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067403541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.023 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds