Wall clock time and date at job start Tue Mar 31 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99868 * 2 1 4 4 H 1.48506 * 109.47189 * 270.00099 * 3 2 1 5 5 H 1.48505 * 109.47430 * 30.00111 * 3 2 1 6 6 H 1.48506 * 109.47234 * 150.00156 * 3 2 1 7 7 C 1.37877 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00229 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.46957 * 110.99920 * 169.99863 * 10 9 7 12 12 C 1.53052 * 109.36800 * 183.18920 * 11 10 9 13 13 N 1.46952 * 109.36421 * 301.60351 * 12 11 10 14 14 C 1.46899 * 110.99951 * 183.18693 * 13 12 11 15 15 C 1.50703 * 109.47107 * 169.99745 * 14 13 12 16 16 C 1.38248 * 120.00188 * 104.99859 * 15 14 13 17 17 C 1.38219 * 120.03913 * 179.97438 * 16 15 14 18 18 C 1.38243 * 120.03919 * 0.02562 * 17 16 15 19 19 C 1.38308 * 120.00140 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 120.02069 * 180.02562 * 19 18 17 21 21 C 1.38308 * 119.99827 * 284.72788 * 15 14 13 22 22 Cl 1.73598 * 120.01968 * 359.97438 * 21 15 14 23 23 C 1.46957 * 110.88258 * 59.31498 * 13 12 11 24 24 C 1.46948 * 111.00364 * 293.79659 * 10 9 7 25 25 H 0.96993 * 119.99951 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47079 * 59.99707 * 9 7 2 27 27 H 1.08998 * 109.46664 * 300.00270 * 9 7 2 28 28 H 1.09004 * 109.49248 * 63.22334 * 11 10 9 29 29 H 1.09002 * 109.48992 * 303.15937 * 11 10 9 30 30 H 1.08999 * 109.48888 * 181.63047 * 12 11 10 31 31 H 1.08999 * 109.48553 * 61.56520 * 12 11 10 32 32 H 1.09002 * 109.47043 * 289.99725 * 14 13 12 33 33 H 1.09001 * 109.47354 * 49.99787 * 14 13 12 34 34 H 1.07999 * 119.97831 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.97772 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.00512 * 180.02562 * 18 17 16 37 37 H 1.08994 * 109.48679 * 60.64784 * 23 13 12 38 38 H 1.09002 * 109.48992 * 180.71260 * 23 13 12 39 39 H 1.09000 * 109.49312 * 296.78406 * 24 10 9 40 40 H 1.09006 * 109.48712 * 56.82499 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5211 -4.8940 0.2388 12 6 2.5566 -6.0187 0.3105 13 7 3.3197 -6.0592 -0.9447 14 6 4.2743 -7.1758 -0.9447 15 6 4.8584 -7.3374 -2.3245 16 6 6.1510 -6.9197 -2.5812 17 6 6.6876 -7.0680 -3.8463 18 6 5.9323 -7.6337 -4.8565 19 6 4.6389 -8.0521 -4.6015 20 17 3.6901 -8.7632 -5.8695 21 6 4.1031 -7.9086 -3.3325 22 17 2.4826 -8.4403 -3.0087 23 6 4.0044 -4.7809 -1.1830 24 6 2.9688 -3.6562 -1.2547 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.8255 -5.0916 -0.5768 29 1 0.9735 -4.8433 1.1799 30 1 2.0487 -6.9717 0.4583 31 1 3.2357 -5.8352 1.1431 32 1 5.0742 -6.9699 -0.2333 33 1 3.7603 -8.0932 -0.6580 34 1 6.7418 -6.4773 -1.7928 35 1 7.6977 -6.7418 -4.0457 36 1 6.3523 -7.7497 -5.8447 37 1 4.6998 -4.5834 -0.3674 38 1 4.5520 -4.8315 -2.1241 39 1 2.2897 -3.8397 -2.0873 40 1 3.4764 -2.7030 -1.4027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067403541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:41 Heat of formation + Delta-G solvation = 4.721284 kcal Electronic energy + Delta-G solvation = -23321.881716 eV Core-core repulsion = 19801.269374 eV Total energy + Delta-G solvation = -3520.612342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.86804 -39.75929 -37.60112 -37.36146 -36.64620 -34.65212 -32.72221 -31.80449 -31.52166 -29.85126 -27.56204 -25.40421 -24.52342 -23.70488 -23.28508 -22.23260 -20.59280 -18.48876 -18.17666 -17.34678 -17.03712 -16.71866 -16.45799 -15.83530 -15.79090 -15.46918 -15.18419 -15.09123 -15.04536 -14.61293 -14.17485 -13.87264 -13.52501 -13.22326 -13.00882 -12.80609 -12.76902 -12.68033 -12.63585 -12.33982 -12.30937 -12.23662 -12.10223 -11.98887 -11.84480 -11.64491 -11.43713 -11.17326 -10.62198 -9.82731 -9.65288 -9.27229 -9.02477 -8.20492 -6.31195 0.02153 0.08675 0.91142 1.33497 1.41251 1.42949 1.54561 2.40412 2.43113 3.05781 3.11860 3.30982 3.52681 3.88553 4.01070 4.09315 4.17777 4.23203 4.27810 4.32688 4.41058 4.49220 4.56641 4.66796 4.68965 4.81829 4.87859 4.99108 5.01497 5.04616 5.07530 5.22751 5.23486 5.28354 5.35162 5.63775 5.67817 6.01484 6.06542 6.11477 6.34801 6.62396 6.84827 7.38734 8.90999 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.003013 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.150619 B = 9289.692053 C = 9585.227327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.522 4.522 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.540 5.540 11 C 0.055 3.945 12 C 0.076 3.924 13 N -0.539 5.539 14 C 0.096 3.904 15 C -0.070 4.070 16 C -0.098 4.098 17 C -0.097 4.097 18 C -0.102 4.102 19 C -0.051 4.051 20 Cl -0.062 7.062 21 C -0.027 4.027 22 Cl -0.055 7.055 23 C 0.076 3.924 24 C 0.071 3.929 25 H 0.264 0.736 26 H -0.045 1.045 27 H 0.003 0.997 28 H 0.015 0.985 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.160 0.840 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.007 0.993 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.710 -19.961 -7.607 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.265 5.265 11 C -0.074 4.074 12 C -0.052 4.052 13 N -0.264 5.264 14 C -0.031 4.031 15 C -0.071 4.071 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.079 4.079 20 Cl -0.033 7.033 21 C -0.055 4.055 22 Cl -0.026 7.026 23 C -0.052 4.052 24 C -0.058 4.058 25 H 0.073 0.927 26 H -0.027 1.027 27 H 0.021 0.979 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.177 0.823 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.025 0.975 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.309 -19.974 -7.665 26.307 hybrid contribution -0.858 0.914 -0.214 1.272 sum 14.451 -19.060 -7.879 25.183 Atomic orbital electron populations 1.70098 1.07877 1.27923 1.51796 1.25958 0.95737 1.03352 0.94747 0.85353 0.78625 0.78038 0.78427 1.19832 1.20796 1.18580 1.21447 0.93633 0.90913 1.50041 0.91693 1.19342 0.90118 0.89195 0.93092 1.62239 1.27111 1.02948 1.34204 1.22152 0.95794 0.89688 0.99740 1.22023 0.95282 0.97889 0.90011 1.62085 1.26166 1.03038 1.35126 1.21036 0.94892 0.95070 0.92092 1.19760 0.94320 0.98009 0.95018 1.21508 0.93556 0.97853 0.98702 1.21561 1.01454 0.96947 0.91509 1.21368 0.90819 0.97918 1.02000 1.21019 0.94574 1.03714 0.88568 1.98380 1.72395 1.82161 1.50393 1.20800 0.87913 1.03064 0.93729 1.98385 1.20324 1.88318 1.95544 1.22038 0.94538 0.87584 1.01076 1.21943 0.95673 0.98543 0.89591 0.92701 1.02726 0.97865 0.96685 0.91094 0.88735 0.93565 0.91568 0.88940 0.82519 0.81216 0.82259 0.93647 0.89778 0.97509 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.52 -30.03 8.47 25.60 0.22 -29.81 16 8 H 0.06 3.62 7.13 -2.91 -0.02 3.60 16 9 C 0.21 11.55 4.72 85.56 0.40 11.95 16 10 N -0.54 -24.04 4.70 -900.29 -4.23 -28.27 16 11 C 0.05 2.05 5.61 86.31 0.48 2.53 16 12 C 0.08 2.11 5.61 86.31 0.48 2.59 16 13 N -0.54 -14.46 4.61 -900.29 -4.15 -18.61 16 14 C 0.10 1.92 4.43 85.56 0.38 2.30 16 15 C -0.07 -1.35 4.43 -19.84 -0.09 -1.44 16 16 C -0.10 -1.40 9.03 22.27 0.20 -1.20 16 17 C -0.10 -1.14 10.04 22.27 0.22 -0.92 16 18 C -0.10 -1.50 9.83 22.29 0.22 -1.28 16 19 C -0.05 -1.04 6.32 22.35 0.14 -0.90 16 20 Cl -0.06 -1.29 27.96 -2.72 -0.08 -1.37 16 21 C -0.03 -0.60 6.32 22.35 0.14 -0.46 16 22 Cl -0.05 -1.36 26.57 -2.72 -0.07 -1.44 16 23 C 0.08 2.23 5.42 86.31 0.47 2.69 16 24 C 0.07 2.85 5.43 86.31 0.47 3.32 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.04 -2.75 8.12 -2.38 -0.02 -2.77 16 27 H 0.00 0.19 8.03 -2.39 -0.02 0.17 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 2.61 8.07 -2.39 -0.02 2.59 16 30 H 0.09 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.11 7.93 -2.39 -0.02 1.09 16 33 H 0.09 1.77 7.46 -2.39 -0.02 1.76 16 34 H 0.16 1.57 8.00 -2.91 -0.02 1.55 16 35 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 2.23 6.71 -2.39 -0.02 2.21 16 39 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 2.91 6.79 -2.38 -0.02 2.89 16 Total: -1.00 -68.01 352.41 -0.98 -69.00 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: 1.04 Total: 1.53 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.20 Total: -10.17 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -8.10 Total: -104.04 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.15 Total: -2.81 kcal Total: -68.01 -0.98 -69.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067403541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.717 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds