Wall clock time and date at job start Tue Mar 31 2020 14:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48497 * 109.46938 * 239.99538 * 3 2 1 5 5 H 1.48498 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46866 * 120.00026 * 3 2 1 7 7 C 1.37874 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00577 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47272 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.47326 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.53923 * 68.37159 * 12 11 10 14 14 O 1.42102 * 110.54031 * 291.62017 * 12 11 10 15 15 N 1.65601 * 104.44804 * 179.97438 * 12 11 10 16 16 C 1.46493 * 120.00140 * 65.00155 * 15 12 11 17 17 C 1.50706 * 109.47044 * 165.00007 * 16 15 12 18 18 C 1.38256 * 119.99730 * 259.99601 * 17 16 15 19 19 C 1.38214 * 120.00164 * 179.97438 * 18 17 16 20 20 C 1.38261 * 119.99661 * 0.02562 * 19 18 17 21 21 C 1.38212 * 120.00042 * 359.97438 * 20 19 18 22 22 C 1.38211 * 120.00152 * 79.72273 * 17 16 15 23 23 N 1.48016 * 120.00167 * 359.97438 * 22 17 16 24 24 O 1.21803 * 120.00165 * 179.97438 * 23 22 17 25 25 O 1.21803 * 120.00005 * 0.02562 * 23 22 17 26 26 H 0.97003 * 120.00025 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46789 * 60.00168 * 9 7 2 28 28 H 1.08996 * 109.47310 * 300.00370 * 9 7 2 29 29 H 1.08994 * 109.47445 * 59.99894 * 10 9 7 30 30 H 1.09008 * 109.46980 * 299.99935 * 10 9 7 31 31 H 1.09006 * 109.47820 * 59.99334 * 11 10 9 32 32 H 1.09001 * 109.47241 * 299.99344 * 11 10 9 33 33 H 0.97004 * 119.99538 * 244.99660 * 15 12 11 34 34 H 1.08995 * 109.47329 * 44.99812 * 16 15 12 35 35 H 1.08999 * 109.47222 * 284.99382 * 16 15 12 36 36 H 1.07999 * 120.00073 * 0.02562 * 18 17 16 37 37 H 1.07991 * 120.00008 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.99635 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.99941 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 16 2.6590 -6.3659 0.0037 13 8 3.3558 -6.4257 1.2407 14 8 3.3556 -6.4268 -1.2333 15 7 1.7085 -7.7220 0.0050 16 6 0.8487 -8.0149 -1.1442 17 6 0.3822 -9.4461 -1.0708 18 6 1.0055 -10.4162 -1.8336 19 6 0.5782 -11.7289 -1.7659 20 6 -0.4730 -12.0717 -0.9358 21 6 -1.0961 -11.1019 -0.1733 22 6 -0.6649 -9.7898 -0.2368 23 7 -1.3279 -8.7523 0.5848 24 8 -2.2510 -9.0551 1.3195 25 8 -0.9510 -7.5956 0.5255 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5574 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6051 -0.8874 31 1 0.8537 -5.0454 -0.8868 32 1 0.8533 -5.0443 0.8931 33 1 1.7213 -8.3224 0.7668 34 1 1.4098 -7.8625 -2.0661 35 1 -0.0151 -7.3502 -1.1305 36 1 1.8269 -10.1485 -2.4817 37 1 1.0653 -12.4868 -2.3614 38 1 -0.8072 -13.0974 -0.8832 39 1 -1.9175 -11.3696 0.4748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068881824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:56 Heat of formation + Delta-G solvation = -54.489663 kcal Electronic energy + Delta-G solvation = -25520.901401 eV Core-core repulsion = 21559.056021 eV Total energy + Delta-G solvation = -3961.845380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.49675 -40.03194 -37.06070 -36.84944 -35.79612 -35.51990 -34.58668 -32.45047 -32.11788 -31.79811 -27.72759 -27.32676 -25.81291 -23.65416 -23.16603 -22.40700 -20.60589 -19.46007 -19.25612 -18.79346 -17.81248 -17.64066 -16.98952 -16.48797 -16.27669 -16.09957 -15.63189 -15.24389 -15.00660 -14.44944 -14.21924 -14.05587 -13.66862 -13.50422 -12.87125 -12.51071 -12.28299 -12.21865 -11.93475 -11.83280 -11.74081 -11.68568 -11.64741 -11.31607 -11.22895 -11.13726 -10.84894 -10.81165 -10.39647 -10.15395 -9.87141 -9.86714 -9.65183 -9.26186 -9.02529 -8.34289 -5.99234 -4.02326 -0.56022 0.26125 0.57486 0.99894 1.10667 2.63190 2.96571 3.36146 3.39962 3.43065 3.68866 3.81660 3.96265 4.11240 4.32073 4.37194 4.45252 4.47486 4.58051 4.91770 4.94087 5.13048 5.25287 5.27245 5.31510 5.36997 5.45874 5.52118 5.56555 5.76114 6.01379 6.18893 6.34603 6.54942 6.75391 6.95358 7.41729 7.65239 7.76092 7.99147 8.39546 9.03861 9.61880 11.11863 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002812 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.828974 B = 9954.332136 C =10766.279740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.602 4.602 12 S 2.601 3.399 13 O -0.962 6.962 14 O -0.964 6.964 15 N -1.113 6.113 16 C 0.139 3.861 17 C -0.028 4.028 18 C -0.103 4.103 19 C -0.068 4.068 20 C -0.116 4.116 21 C -0.057 4.057 22 C -0.035 4.035 23 N 0.025 4.975 24 O -0.164 6.164 25 O -0.139 6.139 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.411 0.589 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -28.725 -4.384 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.734 4.734 12 S 2.698 3.302 13 O -0.953 6.953 14 O -0.954 6.954 15 N -0.870 5.870 16 C 0.013 3.987 17 C -0.031 4.031 18 C -0.122 4.122 19 C -0.086 4.086 20 C -0.135 4.135 21 C -0.076 4.076 22 C -0.118 4.118 23 N 0.544 4.456 24 O -0.378 6.378 25 O -0.356 6.356 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.244 0.756 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.077 -29.009 -4.938 29.446 hybrid contribution -0.586 1.021 0.567 1.307 sum -1.663 -27.988 -4.371 28.376 Atomic orbital electron populations 1.69954 1.06049 1.26818 1.50524 1.25014 0.94871 0.99283 0.95185 0.86631 0.79570 0.82959 0.78704 1.20184 1.21282 1.20151 1.21227 0.93177 0.90972 1.51112 0.92487 1.19056 0.93512 0.90275 0.97888 1.21507 0.99377 0.91841 1.01807 1.30475 1.16041 1.14982 1.11946 1.05313 0.75524 0.75182 0.74147 1.93579 1.70794 1.85795 1.45086 1.93555 1.70417 1.85772 1.45684 1.55627 1.61550 1.43016 1.26781 1.20593 0.96623 0.91296 0.90189 1.19869 0.92200 0.97687 0.93365 1.21336 0.99917 0.91887 0.99043 1.21685 0.94586 0.96597 0.95765 1.21287 0.96182 0.99913 0.96075 1.21116 0.99163 0.89651 0.97647 1.21088 1.00382 0.89241 1.01097 1.43598 1.00040 1.01945 0.99972 1.94554 1.20512 1.87114 1.35579 1.94559 1.67522 1.03556 1.70010 0.92869 0.96061 0.95941 0.91655 0.91713 0.85317 0.84594 0.75594 0.88477 0.87710 0.82982 0.83714 0.83472 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 10 C -0.11 -2.18 5.16 -26.74 -0.14 -2.32 16 11 C -0.60 -9.58 6.07 37.15 0.23 -9.36 16 12 S 2.60 38.50 5.46 -107.50 -0.59 37.91 16 13 O -0.96 -17.25 18.08 -57.54 -1.04 -18.29 16 14 O -0.96 -16.34 17.50 -57.54 -1.01 -17.34 16 15 N -1.11 -12.48 5.10 -11.66 -0.06 -12.54 16 16 C 0.14 1.33 5.27 -5.19 -0.03 1.30 16 17 C -0.03 -0.23 5.28 -104.62 -0.55 -0.78 16 18 C -0.10 -0.56 9.67 -39.58 -0.38 -0.95 16 19 C -0.07 -0.24 10.05 -39.58 -0.40 -0.64 16 20 C -0.12 -0.43 10.05 -39.58 -0.40 -0.83 16 21 C -0.06 -0.35 9.56 -39.58 -0.38 -0.73 16 22 C -0.03 -0.31 6.85 -79.95 -0.55 -0.85 16 23 N 0.03 0.30 4.45 33.96 0.15 0.45 16 24 O -0.16 -2.11 18.45 -29.46 -0.54 -2.65 16 25 O -0.14 -1.83 14.75 -29.46 -0.43 -2.26 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 31 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 32 H 0.14 2.05 8.14 -51.92 -0.42 1.62 16 33 H 0.41 4.20 8.61 -34.47 -0.30 3.91 16 34 H 0.10 0.81 7.56 -51.93 -0.39 0.42 16 35 H 0.11 1.02 5.90 -51.93 -0.31 0.72 16 36 H 0.15 0.61 8.04 -52.49 -0.42 0.19 16 37 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 38 H 0.15 0.15 8.06 -52.49 -0.42 -0.28 16 39 H 0.15 0.80 7.61 -52.49 -0.40 0.40 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -37.29 354.16 -10.35 -47.64 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.74 Total: -0.59 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -3.15 Total: -28.27 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.83 Total: -38.32 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -3.02 Total: -40.55 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 38.50 SS G_CDS: -0.59 Total: 37.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.29 -10.35 -47.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.848 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds