Wall clock time and date at job start Tue Mar 31 2020 14:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99930 * 2 1 4 4 H 1.48497 * 109.46938 * 239.99538 * 3 2 1 5 5 H 1.48498 * 109.47252 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46866 * 120.00026 * 3 2 1 7 7 C 1.37874 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00577 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47268 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47272 * 180.02562 * 10 9 7 12 12 S 1.81406 * 109.47326 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.53923 * 68.37159 * 12 11 10 14 14 O 1.42102 * 110.54031 * 291.62017 * 12 11 10 15 15 N 1.65601 * 104.44804 * 179.97438 * 12 11 10 16 16 C 1.46493 * 120.00140 * 65.00155 * 15 12 11 17 17 C 1.50706 * 109.47044 * 165.00007 * 16 15 12 18 18 C 1.38256 * 119.99730 * 259.99601 * 17 16 15 19 19 C 1.38214 * 120.00164 * 179.97438 * 18 17 16 20 20 C 1.38261 * 119.99661 * 0.02562 * 19 18 17 21 21 C 1.38212 * 120.00042 * 359.97438 * 20 19 18 22 22 C 1.38211 * 120.00152 * 79.72273 * 17 16 15 23 23 N 1.48016 * 120.00167 * 359.97438 * 22 17 16 24 24 O 1.21803 * 120.00165 * 179.97438 * 23 22 17 25 25 O 1.21803 * 120.00005 * 0.02562 * 23 22 17 26 26 H 0.97003 * 120.00025 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46789 * 60.00168 * 9 7 2 28 28 H 1.08996 * 109.47310 * 300.00370 * 9 7 2 29 29 H 1.08994 * 109.47445 * 59.99894 * 10 9 7 30 30 H 1.09008 * 109.46980 * 299.99935 * 10 9 7 31 31 H 1.09006 * 109.47820 * 59.99334 * 11 10 9 32 32 H 1.09001 * 109.47241 * 299.99344 * 11 10 9 33 33 H 0.97004 * 119.99538 * 244.99660 * 15 12 11 34 34 H 1.08995 * 109.47329 * 44.99812 * 16 15 12 35 35 H 1.08999 * 109.47222 * 284.99382 * 16 15 12 36 36 H 1.07999 * 120.00073 * 0.02562 * 18 17 16 37 37 H 1.07991 * 120.00008 * 180.02562 * 19 18 17 38 38 H 1.08002 * 119.99635 * 179.97438 * 20 19 18 39 39 H 1.08000 * 119.99941 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9870 0.0033 12 16 2.6590 -6.3659 0.0037 13 8 3.3558 -6.4257 1.2407 14 8 3.3556 -6.4268 -1.2333 15 7 1.7085 -7.7220 0.0050 16 6 0.8487 -8.0149 -1.1442 17 6 0.3822 -9.4461 -1.0708 18 6 1.0055 -10.4162 -1.8336 19 6 0.5782 -11.7289 -1.7659 20 6 -0.4730 -12.0717 -0.9358 21 6 -1.0961 -11.1019 -0.1733 22 6 -0.6649 -9.7898 -0.2368 23 7 -1.3279 -8.7523 0.5848 24 8 -2.2510 -9.0551 1.3195 25 8 -0.9510 -7.5956 0.5255 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5574 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8719 -3.6036 0.8926 30 1 2.8719 -3.6051 -0.8874 31 1 0.8537 -5.0454 -0.8868 32 1 0.8533 -5.0443 0.8931 33 1 1.7213 -8.3224 0.7668 34 1 1.4098 -7.8625 -2.0661 35 1 -0.0151 -7.3502 -1.1305 36 1 1.8269 -10.1485 -2.4817 37 1 1.0653 -12.4868 -2.3614 38 1 -0.8072 -13.0974 -0.8832 39 1 -1.9175 -11.3696 0.4748 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068881824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:55 Heat of formation + Delta-G solvation = -80.741065 kcal Electronic energy + Delta-G solvation = -25522.039747 eV Core-core repulsion = 21559.056021 eV Total energy + Delta-G solvation = -3962.983726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.28642 -40.54469 -38.23966 -37.84358 -37.10172 -36.44113 -36.36412 -34.14191 -32.96539 -32.37849 -29.63068 -28.04409 -26.48175 -25.59741 -23.71445 -22.99735 -22.39247 -20.45199 -20.11554 -19.61840 -18.85011 -18.56799 -18.51757 -17.77517 -17.20326 -16.87663 -16.68036 -16.46626 -16.24458 -15.67456 -15.49205 -14.79610 -14.48372 -14.35491 -14.02863 -13.99663 -13.49625 -13.43813 -13.23344 -13.16144 -13.03731 -12.93796 -12.71265 -12.63295 -12.57689 -12.38790 -12.27412 -12.15481 -12.04708 -11.71701 -11.36911 -11.11064 -10.59019 -10.55449 -10.39794 -10.27025 -8.20325 -6.31971 -1.27199 -0.75458 -0.06026 0.31677 0.42064 1.40685 1.43960 1.51817 1.73734 2.35267 2.41285 2.70938 3.10082 3.12757 3.26769 3.34374 3.71222 3.79101 3.95967 3.97236 4.02869 4.12433 4.27918 4.39978 4.43417 4.62543 4.67991 4.73040 4.88273 5.03255 5.05744 5.09912 5.14500 5.25254 5.47543 5.56151 5.65559 5.81767 5.86590 6.21317 6.48353 6.83937 7.37191 8.91113 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002812 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.828974 B = 9954.332136 C =10766.279740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.031 3.969 10 C -0.105 4.105 11 C -0.608 4.608 12 S 2.639 3.361 13 O -0.992 6.992 14 O -0.980 6.980 15 N -1.100 6.100 16 C 0.130 3.870 17 C -0.043 4.043 18 C -0.104 4.104 19 C -0.050 4.050 20 C -0.103 4.103 21 C -0.062 4.062 22 C -0.056 4.056 23 N 0.029 4.971 24 O -0.190 6.190 25 O -0.175 6.175 26 H 0.265 0.735 27 H 0.003 0.997 28 H -0.001 1.001 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.418 0.582 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.170 0.830 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 -31.333 -5.734 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.739 4.739 12 S 2.734 3.266 13 O -0.982 6.982 14 O -0.970 6.970 15 N -0.859 5.859 16 C 0.004 3.996 17 C -0.046 4.046 18 C -0.123 4.123 19 C -0.068 4.068 20 C -0.121 4.121 21 C -0.082 4.082 22 C -0.140 4.140 23 N 0.541 4.459 24 O -0.401 6.401 25 O -0.387 6.387 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.252 0.748 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.187 0.813 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.089 -31.579 -6.270 32.196 hybrid contribution -0.987 1.603 0.904 2.089 sum -0.898 -29.976 -5.367 30.465 Atomic orbital electron populations 1.70084 1.07733 1.27941 1.51334 1.25973 0.95809 1.03341 0.94585 0.85508 0.78317 0.78046 0.79249 1.19027 1.20681 1.19248 1.21725 0.93770 0.92465 1.51113 0.91991 1.18951 0.94023 0.91919 0.95816 1.21314 0.98598 0.92377 1.02128 1.30479 1.16582 1.13671 1.13176 1.04018 0.74775 0.74908 0.72919 1.93534 1.71878 1.86343 1.46489 1.93528 1.70988 1.86141 1.46358 1.55237 1.61423 1.41437 1.27828 1.20765 0.96257 0.92843 0.89695 1.19818 0.92847 0.97232 0.94684 1.21652 0.99965 0.92226 0.98464 1.22181 0.93533 0.96400 0.94672 1.21759 0.95206 1.00805 0.94328 1.21417 0.99570 0.88949 0.98217 1.21296 1.01545 0.89206 1.01970 1.44078 0.99688 1.02348 0.99778 1.94518 1.21613 1.87184 1.36764 1.94538 1.68120 1.05096 1.70962 0.92658 0.97843 0.98269 0.91685 0.91102 0.83639 0.84141 0.74789 0.87096 0.88481 0.81301 0.79863 0.79896 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.10 -4.44 5.16 30.59 0.16 -4.28 16 11 C -0.61 -19.83 6.07 71.98 0.44 -19.39 16 12 S 2.64 77.59 5.46 -56.49 -0.31 77.28 16 13 O -0.99 -35.54 18.08 -127.65 -2.31 -37.85 16 14 O -0.98 -32.34 17.50 -127.65 -2.23 -34.58 16 15 N -1.10 -24.24 5.10 -190.80 -0.97 -25.22 16 16 C 0.13 2.40 5.27 85.64 0.45 2.85 16 17 C -0.04 -0.63 5.28 -19.86 -0.10 -0.73 16 18 C -0.10 -0.79 9.67 22.27 0.22 -0.58 16 19 C -0.05 -0.12 10.05 22.27 0.22 0.11 16 20 C -0.10 -0.33 10.05 22.27 0.22 -0.10 16 21 C -0.06 -0.65 9.56 22.27 0.21 -0.44 16 22 C -0.06 -0.96 6.85 36.37 0.25 -0.71 16 23 N 0.03 0.72 4.45 -46.47 -0.21 0.51 16 24 O -0.19 -5.13 18.45 18.88 0.35 -4.78 16 25 O -0.17 -4.88 14.75 18.88 0.28 -4.60 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 28 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 31 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 32 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 33 H 0.42 8.41 8.61 -96.74 -0.83 7.58 16 34 H 0.11 1.71 7.56 -2.39 -0.02 1.69 16 35 H 0.10 1.96 5.90 -2.39 -0.01 1.94 16 36 H 0.17 0.71 8.04 -2.91 -0.02 0.68 16 37 H 0.18 -0.90 8.06 -2.92 -0.02 -0.92 16 38 H 0.18 -0.67 8.06 -2.91 -0.02 -0.70 16 39 H 0.16 1.43 7.61 -2.91 -0.02 1.41 16 Total: -1.00 -83.06 354.16 0.07 -82.98 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.25 Total: 9.22 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 2.91 Total: -52.93 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -0.90 Total: -81.85 kcal Atomic # 8 Polarization: -77.90 SS G_CDS: -3.91 Total: -81.81 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 77.59 SS G_CDS: -0.31 Total: 77.28 kcal Total: -83.06 0.07 -82.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068881824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.243 kcal (2) G-P(sol) polarization free energy of solvation -83.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds