Wall clock time and date at job start Tue Mar 31 2020 14:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00325 * 2 1 4 4 H 1.48498 * 109.47285 * 270.00243 * 3 2 1 5 5 H 1.48497 * 109.46955 * 30.00381 * 3 2 1 6 6 H 1.48497 * 109.46901 * 150.00176 * 3 2 1 7 7 C 1.37879 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47234 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.42095 * 110.54067 * 68.37553 * 12 11 10 14 14 O 1.42096 * 110.54230 * 291.62529 * 12 11 10 15 15 N 1.65604 * 104.45110 * 180.02562 * 12 11 10 16 16 C 1.46496 * 119.99959 * 64.99604 * 15 12 11 17 17 C 1.50696 * 109.47144 * 165.00115 * 16 15 12 18 18 C 1.38238 * 119.99764 * 90.00180 * 17 16 15 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00189 * 270.02504 * 17 16 15 26 26 H 0.97004 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46745 * 60.00307 * 9 7 2 28 28 H 1.09000 * 109.47059 * 300.00266 * 9 7 2 29 29 H 1.08999 * 109.47075 * 59.99669 * 10 9 7 30 30 H 1.09000 * 109.47279 * 300.00111 * 10 9 7 31 31 H 1.08997 * 109.46902 * 60.00215 * 11 10 9 32 32 H 1.09000 * 109.46941 * 300.00150 * 11 10 9 33 33 H 0.96995 * 119.99557 * 245.00208 * 15 12 11 34 34 H 1.09004 * 109.47103 * 45.00459 * 16 15 12 35 35 H 1.08997 * 109.47720 * 285.00405 * 16 15 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.07999 * 119.99990 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0214 -2.6368 -0.0023 11 6 5.5513 -2.6369 -0.0022 12 16 6.1559 -4.3472 -0.0028 13 8 5.8598 -4.9802 -1.2401 14 8 5.8597 -4.9812 1.2339 15 7 7.8056 -4.2024 -0.0020 16 6 8.4878 -3.6047 1.1484 17 6 9.9605 -3.9165 1.0767 18 6 10.8175 -3.0569 0.4153 19 6 12.1684 -3.3427 0.3500 20 6 12.6622 -4.4882 0.9456 21 7 14.1087 -4.7944 0.8752 22 8 14.8639 -4.0368 0.2928 23 8 14.5439 -5.8035 1.4004 24 6 11.8043 -5.3508 1.6019 25 6 10.4542 -5.0623 1.6719 26 1 -0.4849 0.8401 0.0004 27 1 3.8751 -0.6807 0.8889 28 1 3.8745 -0.6802 -0.8911 29 1 3.6576 -3.1500 -0.8924 30 1 3.6583 -3.1512 0.8875 31 1 5.9146 -2.1239 0.8882 32 1 5.9147 -2.1223 -0.8918 33 1 8.3200 -4.5132 -0.7633 34 1 8.0741 -4.0150 2.0696 35 1 8.3442 -2.5244 1.1351 36 1 10.4319 -2.1618 -0.0497 37 1 12.8381 -2.6713 -0.1671 38 1 12.1895 -6.2481 2.0635 39 1 9.7846 -5.7338 2.1887 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068896603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:59 Heat of formation + Delta-G solvation = -61.124869 kcal Electronic energy + Delta-G solvation = -24344.403298 eV Core-core repulsion = 20382.270194 eV Total energy + Delta-G solvation = -3962.133104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.60333 -40.26293 -37.17733 -36.98116 -36.15074 -35.91746 -34.93398 -32.32676 -32.29919 -32.05253 -28.49839 -28.02945 -25.13056 -23.83665 -23.72889 -22.22669 -20.65552 -19.86551 -19.54654 -19.07487 -17.97203 -17.93880 -17.21155 -16.93043 -16.36798 -16.01597 -15.88749 -15.45752 -15.13333 -14.54198 -14.42440 -14.27914 -13.85076 -13.78227 -13.02292 -12.93319 -12.45554 -12.28283 -12.18005 -12.11037 -12.05515 -12.03027 -11.95695 -11.70460 -11.58981 -11.54640 -11.11944 -11.03375 -10.23037 -10.16511 -10.13557 -10.02437 -9.93617 -9.58476 -9.34473 -8.65920 -6.15300 -4.15142 -0.73557 0.16982 0.32400 0.81489 0.93552 2.43732 2.79423 3.20187 3.27727 3.29151 3.62435 3.72789 3.77208 3.89073 4.11437 4.20925 4.28618 4.33217 4.62090 4.71063 4.76363 4.87837 4.92045 5.04492 5.12263 5.14254 5.17980 5.28110 5.55278 5.60916 5.65463 5.96018 6.01783 6.13758 6.50926 6.56277 7.02358 7.16460 7.19511 7.63172 8.39952 8.88857 9.45358 10.97894 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.002179 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.490815 B =12845.000704 C =13703.650959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.614 4.614 12 S 2.602 3.398 13 O -0.955 6.955 14 O -0.957 6.957 15 N -1.123 6.123 16 C 0.147 3.853 17 C -0.044 4.044 18 C -0.102 4.102 19 C -0.056 4.056 20 C -0.042 4.042 21 N 0.027 4.973 22 O -0.159 6.159 23 O -0.159 6.159 24 C -0.055 4.055 25 C -0.099 4.099 26 H 0.264 0.736 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.417 0.583 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.598 -6.854 2.576 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.138 4.138 11 C -0.746 4.746 12 S 2.698 3.302 13 O -0.946 6.946 14 O -0.946 6.946 15 N -0.881 5.881 16 C 0.021 3.979 17 C -0.046 4.046 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.125 4.125 21 N 0.547 4.453 22 O -0.375 6.375 23 O -0.375 6.375 24 C -0.074 4.074 25 C -0.118 4.118 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.251 0.749 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 24.161 -7.367 2.783 25.412 hybrid contribution 1.195 1.476 -0.384 1.937 sum 25.356 -5.891 2.400 26.142 Atomic orbital electron populations 1.69913 1.06288 1.27038 1.50461 1.25039 0.94780 0.99209 0.94434 0.86762 0.80255 0.83605 0.78521 1.20226 1.21237 1.19113 1.21118 0.89208 0.94790 1.51573 0.90722 1.19526 0.97412 0.90606 0.96714 1.21329 0.86438 1.03076 1.02939 1.30594 1.09729 1.22999 1.11260 1.05337 0.72408 0.78097 0.74373 1.93607 1.82287 1.73624 1.45048 1.93584 1.82635 1.72787 1.45634 1.55858 1.26690 1.78465 1.27059 1.20348 0.87893 0.99276 0.90404 1.20355 0.96019 0.93849 0.94342 1.21233 0.91402 1.00633 0.98854 1.21104 0.96673 0.94229 0.95454 1.21225 0.80537 1.00883 1.09887 1.43649 1.03444 0.99867 0.98346 1.94552 1.54866 1.45929 1.42183 1.94555 1.80374 1.16160 1.46427 1.21124 0.92813 0.98662 0.94819 1.21278 0.94086 0.97092 0.99321 0.92569 0.96181 0.96615 0.90894 0.90863 0.85418 0.85115 0.74888 0.88155 0.89648 0.82955 0.82650 0.82626 0.82865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 7 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.74 5.16 -26.73 -0.14 -1.88 16 11 C -0.61 -7.30 6.07 37.16 0.23 -7.08 16 12 S 2.60 29.97 5.46 -107.50 -0.59 29.39 16 13 O -0.96 -14.42 18.08 -57.54 -1.04 -15.46 16 14 O -0.96 -13.86 17.49 -57.54 -1.01 -14.86 16 15 N -1.12 -7.91 5.88 -11.66 -0.07 -7.98 16 16 C 0.15 0.76 6.26 -5.20 -0.03 0.73 16 17 C -0.04 -0.21 5.28 -104.63 -0.55 -0.76 16 18 C -0.10 -0.43 9.70 -39.58 -0.38 -0.82 16 19 C -0.06 -0.31 9.56 -39.58 -0.38 -0.69 16 20 C -0.04 -0.32 6.85 -79.95 -0.55 -0.86 16 21 N 0.03 0.27 4.45 33.96 0.15 0.42 16 22 O -0.16 -1.73 18.45 -29.46 -0.54 -2.27 16 23 O -0.16 -1.74 18.45 -29.46 -0.54 -2.28 16 24 C -0.06 -0.33 9.56 -39.58 -0.38 -0.71 16 25 C -0.10 -0.49 9.70 -39.58 -0.38 -0.88 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 28 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.42 2.40 8.61 -34.47 -0.30 2.10 16 34 H 0.10 0.52 7.64 -51.93 -0.40 0.13 16 35 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 36 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 37 H 0.16 0.70 7.61 -52.48 -0.40 0.30 16 38 H 0.16 0.76 7.61 -52.48 -0.40 0.36 16 39 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -36.74 357.05 -10.07 -46.80 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.80 Total: -2.72 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -3.11 Total: -26.19 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.86 Total: -33.78 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -3.13 Total: -34.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Atomic # 16 Polarization: 29.97 SS G_CDS: -0.59 Total: 29.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.74 -10.07 -46.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068896603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.322 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds