Wall clock time and date at job start Tue Mar 31 2020 14:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00325 * 2 1 4 4 H 1.48498 * 109.47285 * 270.00243 * 3 2 1 5 5 H 1.48497 * 109.46955 * 30.00381 * 3 2 1 6 6 H 1.48497 * 109.46901 * 150.00176 * 3 2 1 7 7 C 1.37879 * 119.99386 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00221 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99892 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47234 * 180.02562 * 10 9 7 12 12 S 1.81401 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.42095 * 110.54067 * 68.37553 * 12 11 10 14 14 O 1.42096 * 110.54230 * 291.62529 * 12 11 10 15 15 N 1.65604 * 104.45110 * 180.02562 * 12 11 10 16 16 C 1.46496 * 119.99959 * 64.99604 * 15 12 11 17 17 C 1.50696 * 109.47144 * 165.00115 * 16 15 12 18 18 C 1.38238 * 119.99764 * 90.00180 * 17 16 15 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00189 * 270.02504 * 17 16 15 26 26 H 0.97004 * 119.99425 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46745 * 60.00307 * 9 7 2 28 28 H 1.09000 * 109.47059 * 300.00266 * 9 7 2 29 29 H 1.08999 * 109.47075 * 59.99669 * 10 9 7 30 30 H 1.09000 * 109.47279 * 300.00111 * 10 9 7 31 31 H 1.08997 * 109.46902 * 60.00215 * 11 10 9 32 32 H 1.09000 * 109.46941 * 300.00150 * 11 10 9 33 33 H 0.96995 * 119.99557 * 245.00208 * 15 12 11 34 34 H 1.09004 * 109.47103 * 45.00459 * 16 15 12 35 35 H 1.08997 * 109.47720 * 285.00405 * 16 15 12 36 36 H 1.07991 * 120.00287 * 0.02562 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.07999 * 119.99990 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6525 0.7001 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 -0.0011 10 6 4.0214 -2.6368 -0.0023 11 6 5.5513 -2.6369 -0.0022 12 16 6.1559 -4.3472 -0.0028 13 8 5.8598 -4.9802 -1.2401 14 8 5.8597 -4.9812 1.2339 15 7 7.8056 -4.2024 -0.0020 16 6 8.4878 -3.6047 1.1484 17 6 9.9605 -3.9165 1.0767 18 6 10.8175 -3.0569 0.4153 19 6 12.1684 -3.3427 0.3500 20 6 12.6622 -4.4882 0.9456 21 7 14.1087 -4.7944 0.8752 22 8 14.8639 -4.0368 0.2928 23 8 14.5439 -5.8035 1.4004 24 6 11.8043 -5.3508 1.6019 25 6 10.4542 -5.0623 1.6719 26 1 -0.4849 0.8401 0.0004 27 1 3.8751 -0.6807 0.8889 28 1 3.8745 -0.6802 -0.8911 29 1 3.6576 -3.1500 -0.8924 30 1 3.6583 -3.1512 0.8875 31 1 5.9146 -2.1239 0.8882 32 1 5.9147 -2.1223 -0.8918 33 1 8.3200 -4.5132 -0.7633 34 1 8.0741 -4.0150 2.0696 35 1 8.3442 -2.5244 1.1351 36 1 10.4319 -2.1618 -0.0497 37 1 12.8381 -2.6713 -0.1671 38 1 12.1895 -6.2481 2.0635 39 1 9.7846 -5.7338 2.1887 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068896603.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:59 Heat of formation + Delta-G solvation = -87.686851 kcal Electronic energy + Delta-G solvation = -24345.555112 eV Core-core repulsion = 20382.270194 eV Total energy + Delta-G solvation = -3963.284918 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.28249 -40.68793 -38.19509 -37.72312 -37.06054 -36.56888 -36.47273 -34.22653 -32.84388 -32.42957 -30.12735 -28.60968 -25.67588 -25.37296 -24.21120 -22.72499 -22.22872 -20.43970 -20.38971 -19.78020 -18.96774 -18.75264 -18.63402 -17.86055 -17.21169 -16.67704 -16.62711 -16.20793 -16.07417 -15.72267 -15.37226 -14.90945 -14.83971 -14.31173 -14.28212 -13.98490 -13.62255 -13.55670 -13.20754 -13.17195 -13.10488 -12.79662 -12.73971 -12.67023 -12.51676 -12.45826 -12.34967 -12.27936 -11.82406 -11.61212 -11.38967 -11.30173 -10.76179 -10.58473 -10.45453 -10.38033 -8.28492 -6.34575 -1.35248 -0.73243 -0.03340 0.20711 0.34900 1.38469 1.41247 1.52594 1.77207 2.30768 2.37790 2.79025 3.06981 3.21291 3.35773 3.38549 3.49930 3.73255 3.80191 3.91999 3.98937 4.29452 4.34606 4.38092 4.44058 4.64919 4.69564 4.75547 4.78860 4.80024 4.91914 4.99585 5.13187 5.19555 5.38348 5.45699 5.49622 5.64836 6.02716 6.26692 6.41236 6.74557 7.30162 8.88450 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.002179 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.490815 B =12845.000704 C =13703.650959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.233 1.233 7 C -0.544 4.544 8 H 0.027 0.973 9 C -0.005 4.005 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.627 3.373 13 O -0.996 6.996 14 O -0.990 6.990 15 N -1.107 6.107 16 C 0.135 3.865 17 C -0.038 4.038 18 C -0.090 4.090 19 C -0.058 4.058 20 C -0.061 4.061 21 N 0.029 4.971 22 O -0.178 6.178 23 O -0.188 6.188 24 C -0.060 4.060 25 C -0.099 4.099 26 H 0.266 0.734 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.426 0.574 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.687 -4.717 2.659 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.200 4.200 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.155 1.155 7 C -0.582 4.582 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.723 3.277 13 O -0.986 6.986 14 O -0.979 6.979 15 N -0.868 5.868 16 C 0.011 3.989 17 C -0.040 4.040 18 C -0.109 4.109 19 C -0.077 4.077 20 C -0.144 4.144 21 N 0.543 4.457 22 O -0.392 6.392 23 O -0.399 6.399 24 C -0.079 4.079 25 C -0.119 4.119 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.263 0.737 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.201 0.799 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 26.294 -5.278 2.869 26.972 hybrid contribution 0.442 0.747 -0.395 0.954 sum 26.736 -4.531 2.475 27.230 Atomic orbital electron populations 1.70101 1.08642 1.28262 1.52451 1.26175 0.95722 1.04092 0.93980 0.85559 0.79836 0.77346 0.79284 1.19147 1.21520 1.15531 1.21598 0.92655 0.93127 1.50847 0.95414 1.19512 0.93391 0.93632 0.97867 1.21180 0.91005 1.00299 1.02086 1.30499 1.05035 1.23941 1.14493 1.04295 0.73186 0.77533 0.72700 1.93554 1.83636 1.74770 1.46676 1.93545 1.83817 1.73712 1.46865 1.55362 1.24778 1.78560 1.28123 1.20693 0.87487 1.01248 0.89511 1.20410 0.95994 0.93641 0.93961 1.21544 0.90339 1.01213 0.97798 1.21345 0.97619 0.93607 0.95100 1.21461 0.78737 1.02426 1.11798 1.44046 1.04611 0.99368 0.97649 1.94523 1.56037 1.46007 1.42665 1.94536 1.81252 1.16835 1.47313 1.21250 0.93167 0.98731 0.94789 1.21481 0.93624 0.97533 0.99214 0.92543 0.94593 0.95034 0.92219 0.91854 0.81988 0.82267 0.73735 0.88003 0.86223 0.79895 0.81765 0.82339 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.00 -0.19 5.47 84.65 0.46 0.28 16 3 Si 0.96 41.25 27.47 68.60 1.88 43.13 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.23 -8.69 6.54 99.48 0.65 -8.03 16 7 C -0.54 -30.29 9.66 25.60 0.25 -30.05 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 9 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 10 C -0.11 -3.60 5.16 30.59 0.16 -3.45 16 11 C -0.61 -11.94 6.07 71.98 0.44 -11.51 16 12 S 2.63 53.80 5.46 -56.49 -0.31 53.49 16 13 O -1.00 -28.71 18.08 -127.65 -2.31 -31.02 16 14 O -0.99 -26.91 17.49 -127.65 -2.23 -29.15 16 15 N -1.11 -11.16 5.88 -190.80 -1.12 -12.29 16 16 C 0.14 0.75 6.26 85.63 0.54 1.29 16 17 C -0.04 -0.21 5.28 -19.87 -0.10 -0.32 16 18 C -0.09 -0.37 9.70 22.27 0.22 -0.16 16 19 C -0.06 -0.50 9.56 22.27 0.21 -0.28 16 20 C -0.06 -0.83 6.85 36.37 0.25 -0.58 16 21 N 0.03 0.59 4.45 -46.46 -0.21 0.38 16 22 O -0.18 -3.88 18.45 18.89 0.35 -3.54 16 23 O -0.19 -4.23 18.45 18.89 0.35 -3.88 16 24 C -0.06 -0.63 9.56 22.27 0.21 -0.42 16 25 C -0.10 -0.72 9.70 22.27 0.22 -0.51 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.04 1.39 7.20 -2.39 -0.02 1.37 16 28 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.16 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.43 3.25 8.61 -96.75 -0.83 2.41 16 34 H 0.10 0.63 7.64 -2.38 -0.02 0.61 16 35 H 0.12 -0.06 8.09 -2.39 -0.02 -0.08 16 36 H 0.18 -0.34 8.06 -2.92 -0.02 -0.36 16 37 H 0.16 1.09 7.61 -2.91 -0.02 1.07 16 38 H 0.16 1.47 7.61 -2.91 -0.02 1.45 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -84.08 357.05 -0.14 -84.22 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.20 Total: 3.17 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 2.96 Total: -45.81 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.03 Total: -70.61 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -3.84 Total: -67.59 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.88 Total: 43.13 kcal Atomic # 16 Polarization: 53.80 SS G_CDS: -0.31 Total: 53.49 kcal Total: -84.08 -0.14 -84.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068896603.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.471 kcal (2) G-P(sol) polarization free energy of solvation -84.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds