Wall clock time and date at job start Tue Mar 31 2020 15:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 119.99744 * 2 1 4 4 N 1.48020 * 120.00076 * 359.97438 * 3 2 1 5 5 O 1.21796 * 119.99981 * 174.12643 * 4 3 2 6 6 O 1.21801 * 120.00130 * 354.12345 * 4 3 2 7 7 C 1.38214 * 119.99968 * 179.97438 * 3 2 1 8 8 C 1.38257 * 119.99946 * 0.02562 * 7 3 2 9 9 C 1.38215 * 119.99923 * 359.96503 * 8 7 3 10 10 C 1.38205 * 120.00211 * 179.91375 * 2 1 3 11 11 S 1.76206 * 120.00004 * 0.08430 * 10 2 1 12 12 O 1.42106 * 106.40112 * 175.08122 * 11 10 2 13 13 O 1.42098 * 106.40060 * 307.99929 * 11 10 2 14 14 N 1.65594 * 107.21546 * 61.54090 * 11 10 2 15 15 C 1.46499 * 120.00443 * 64.78858 * 14 11 10 16 16 C 1.53000 * 109.47684 * 162.35183 * 15 14 11 17 17 C 1.52995 * 109.47239 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47186 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99468 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00006 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00094 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47304 * 119.99565 * 22 20 18 25 25 H 1.48503 * 109.47049 * 239.99749 * 22 20 18 26 26 H 1.09002 * 109.47401 * 82.53959 * 1 2 3 27 27 H 1.09005 * 109.47333 * 202.53680 * 1 2 3 28 28 H 1.08996 * 109.47164 * 322.53812 * 1 2 3 29 29 H 1.07994 * 120.00018 * 180.02562 * 7 3 2 30 30 H 1.07999 * 120.00282 * 179.97438 * 8 7 3 31 31 H 1.08004 * 120.00062 * 179.72565 * 9 8 7 32 32 H 0.97000 * 119.99804 * 244.78448 * 14 11 10 33 33 H 1.09007 * 109.46746 * 282.35242 * 15 14 11 34 34 H 1.09002 * 109.47176 * 42.34376 * 15 14 11 35 35 H 1.08998 * 109.46906 * 299.99892 * 16 15 14 36 36 H 1.08996 * 109.46831 * 59.99579 * 16 15 14 37 37 H 1.08998 * 109.47283 * 299.99906 * 17 16 15 38 38 H 1.09004 * 109.47098 * 59.99986 * 17 16 15 39 39 H 0.96998 * 119.99641 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 7 1.4581 2.4793 -0.0006 5 8 2.0622 3.5313 0.1074 6 8 0.2449 2.4820 -0.1090 7 6 3.5804 1.1975 0.0005 8 6 4.2717 0.0001 0.0005 9 6 3.5806 -1.1968 0.0007 10 6 2.1980 -1.1969 0.0018 11 16 1.3171 -2.7229 0.0019 12 8 2.2929 -3.7495 -0.1130 13 8 0.3883 -2.6499 1.0748 14 7 0.4210 -2.7716 -1.3899 15 6 1.0915 -2.8130 -2.6918 16 6 0.1040 -3.2887 -3.7592 17 6 0.8041 -3.3313 -5.1189 18 6 -0.1684 -3.8005 -6.1702 19 1 -1.1844 -4.0435 -5.8959 20 6 0.2388 -3.9194 -7.4821 21 7 1.4761 -3.6240 -7.8159 22 14 -0.9669 -4.5003 -8.7853 23 1 -2.2854 -4.7666 -8.1562 24 1 -1.1168 -3.4500 -9.8243 25 1 -0.4568 -5.7466 -9.4112 26 1 -0.3634 0.1334 -1.0190 27 1 -0.3634 -0.9492 0.3939 28 1 -0.3633 0.8157 0.6250 29 1 4.1203 2.1327 0.0010 30 1 5.3517 0.0001 0.0005 31 1 4.1206 -2.1322 -0.0037 32 1 -0.5479 -2.7727 -1.3431 33 1 1.4505 -1.8160 -2.9474 34 1 1.9350 -3.5017 -2.6443 35 1 -0.2550 -4.2856 -3.5036 36 1 -0.7394 -2.5999 -3.8066 37 1 1.1628 -2.3342 -5.3743 38 1 1.6478 -4.0199 -5.0718 39 1 1.7625 -3.7074 -8.7389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:56 Heat of formation + Delta-G solvation = -57.543994 kcal Electronic energy + Delta-G solvation = -25770.658605 eV Core-core repulsion = 21808.680779 eV Total energy + Delta-G solvation = -3961.977826 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.56763 -40.01237 -37.64282 -36.95478 -36.23821 -36.14754 -33.71762 -33.28809 -32.60942 -30.99254 -28.35376 -26.51604 -26.41077 -23.78990 -23.14800 -22.63229 -20.76378 -20.08350 -19.09452 -18.94673 -17.93214 -17.67566 -17.15675 -16.87806 -16.60250 -16.32791 -15.59181 -14.89818 -14.71869 -14.52271 -14.36736 -14.29017 -13.37405 -13.15147 -13.00154 -12.80968 -12.68624 -12.45958 -12.39611 -12.22443 -12.10758 -11.70338 -11.65307 -11.48300 -11.35251 -11.00751 -10.88574 -10.84523 -10.58976 -10.42088 -10.05150 -9.80765 -9.59248 -9.44325 -9.17602 -8.44001 -6.08904 -4.11706 -0.57829 -0.04509 0.16349 0.90595 1.04210 2.46235 2.76650 3.26269 3.34309 3.37701 3.38127 3.72977 3.87225 4.00366 4.18001 4.31754 4.39288 4.56714 4.74565 4.85757 5.10791 5.16093 5.20323 5.27713 5.30430 5.39729 5.48928 5.66327 5.67384 5.72877 5.92326 6.17248 6.44071 6.62435 6.80986 6.96299 7.36006 7.54328 7.65586 7.89398 8.30722 8.94977 9.53276 11.02435 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.003193 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.458142 B = 8767.092626 C = 9594.164169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.094 3.906 3 C -0.073 4.073 4 N 0.034 4.966 5 O -0.165 6.165 6 O -0.150 6.150 7 C -0.001 4.001 8 C -0.144 4.144 9 C 0.034 3.966 10 C -0.687 4.687 11 S 2.700 3.300 12 O -0.947 6.947 13 O -0.954 6.954 14 N -1.109 6.109 15 C 0.112 3.888 16 C -0.116 4.116 17 C 0.021 3.979 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.111 0.889 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.421 0.579 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 7.883 18.534 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.157 4.157 4 N 0.551 4.449 5 O -0.379 6.379 6 O -0.366 6.366 7 C -0.020 4.020 8 C -0.164 4.164 9 C 0.015 3.985 10 C -0.771 4.771 11 S 2.786 3.214 12 O -0.937 6.937 13 O -0.944 6.944 14 N -0.871 5.871 15 C -0.013 4.013 16 C -0.155 4.155 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.178 0.822 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.257 0.743 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.337 6.693 19.027 20.864 hybrid contribution -0.742 0.891 -1.154 1.636 sum 4.596 7.584 17.873 19.952 Atomic orbital electron populations 1.22048 0.87709 1.07620 1.06429 1.19451 0.97811 0.89295 0.84317 1.21035 0.92813 0.83688 1.18202 1.43437 1.01202 1.02452 0.97762 1.94543 1.70110 1.19647 1.53577 1.94506 0.95845 1.93696 1.52538 1.21367 0.90993 1.01309 0.88333 1.21371 1.01650 0.90609 1.02721 1.21520 0.91900 1.00669 0.84379 1.31305 1.06746 1.19820 1.19254 1.01970 0.73512 0.73151 0.72812 1.93606 1.61807 1.52116 1.86177 1.93585 1.61851 1.86610 1.52317 1.55475 1.19290 1.90927 1.21456 1.21666 0.97135 1.01266 0.81259 1.21863 0.97489 1.00553 0.95597 1.19085 0.96008 0.97518 0.89081 1.21235 0.97370 1.44777 0.92656 0.92488 1.25019 0.95211 0.95420 0.98762 1.69962 1.16338 1.48839 1.18240 0.86524 0.81334 0.78414 0.81658 1.19698 1.21000 1.20973 0.87111 0.88303 0.86645 0.82191 0.82408 0.81784 0.74305 0.92238 0.90188 0.92130 0.92402 0.96388 0.96159 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 8.00 36.00 0.29 -1.56 16 2 C 0.09 1.02 5.88 -104.63 -0.61 0.41 16 3 C -0.07 -0.80 6.83 -79.95 -0.55 -1.35 16 4 N 0.03 0.42 4.45 33.96 0.15 0.57 16 5 O -0.17 -2.12 18.46 -29.46 -0.54 -2.66 16 6 O -0.15 -1.95 15.37 -29.46 -0.45 -2.40 16 7 C 0.00 -0.01 9.56 -39.58 -0.38 -0.39 16 8 C -0.14 -0.99 10.05 -39.58 -0.40 -1.39 16 9 C 0.03 0.29 9.55 -39.58 -0.38 -0.09 16 10 C -0.69 -7.15 5.87 -39.59 -0.23 -7.38 16 11 S 2.70 31.43 4.93 -107.50 -0.53 30.90 16 12 O -0.95 -13.22 16.43 -57.17 -0.94 -14.16 16 13 O -0.95 -12.54 15.70 -57.17 -0.90 -13.44 16 14 N -1.11 -12.66 5.52 -10.61 -0.06 -12.72 16 15 C 0.11 1.58 6.24 -4.04 -0.03 1.55 16 16 C -0.12 -2.06 5.31 -26.73 -0.14 -2.20 16 17 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 18 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 19 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 20 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 22 Si 0.89 21.01 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.10 0.97 4.71 -51.93 -0.24 0.72 16 28 H 0.12 1.16 5.89 -51.93 -0.31 0.86 16 29 H 0.16 0.98 7.62 -52.49 -0.40 0.58 16 30 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.16 1.12 7.35 -52.48 -0.39 0.73 16 32 H 0.42 4.02 8.67 -34.46 -0.30 3.72 16 33 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 34 H 0.08 1.15 7.70 -51.93 -0.40 0.75 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -33.66 346.74 -9.84 -43.50 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.54 Total: -0.69 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -2.98 Total: -24.90 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.83 Total: -37.37 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -2.83 Total: -32.66 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 31.43 SS G_CDS: -0.53 Total: 30.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.66 -9.84 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.043 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds