Wall clock time and date at job start Tue Mar 31 2020 15:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 119.99744 * 2 1 4 4 N 1.48020 * 120.00076 * 359.97438 * 3 2 1 5 5 O 1.21796 * 119.99981 * 174.12643 * 4 3 2 6 6 O 1.21801 * 120.00130 * 354.12345 * 4 3 2 7 7 C 1.38214 * 119.99968 * 179.97438 * 3 2 1 8 8 C 1.38257 * 119.99946 * 0.02562 * 7 3 2 9 9 C 1.38215 * 119.99923 * 359.96503 * 8 7 3 10 10 C 1.38205 * 120.00211 * 179.91375 * 2 1 3 11 11 S 1.76206 * 120.00004 * 0.08430 * 10 2 1 12 12 O 1.42106 * 106.40112 * 175.08122 * 11 10 2 13 13 O 1.42098 * 106.40060 * 307.99929 * 11 10 2 14 14 N 1.65594 * 107.21546 * 61.54090 * 11 10 2 15 15 C 1.46499 * 120.00443 * 64.78858 * 14 11 10 16 16 C 1.53000 * 109.47684 * 162.35183 * 15 14 11 17 17 C 1.52995 * 109.47239 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47186 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99468 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00006 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00094 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99797 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47152 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47304 * 119.99565 * 22 20 18 25 25 H 1.48503 * 109.47049 * 239.99749 * 22 20 18 26 26 H 1.09002 * 109.47401 * 82.53959 * 1 2 3 27 27 H 1.09005 * 109.47333 * 202.53680 * 1 2 3 28 28 H 1.08996 * 109.47164 * 322.53812 * 1 2 3 29 29 H 1.07994 * 120.00018 * 180.02562 * 7 3 2 30 30 H 1.07999 * 120.00282 * 179.97438 * 8 7 3 31 31 H 1.08004 * 120.00062 * 179.72565 * 9 8 7 32 32 H 0.97000 * 119.99804 * 244.78448 * 14 11 10 33 33 H 1.09007 * 109.46746 * 282.35242 * 15 14 11 34 34 H 1.09002 * 109.47176 * 42.34376 * 15 14 11 35 35 H 1.08998 * 109.46906 * 299.99892 * 16 15 14 36 36 H 1.08996 * 109.46831 * 59.99579 * 16 15 14 37 37 H 1.08998 * 109.47283 * 299.99906 * 17 16 15 38 38 H 1.09004 * 109.47098 * 59.99986 * 17 16 15 39 39 H 0.96998 * 119.99641 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 7 1.4581 2.4793 -0.0006 5 8 2.0622 3.5313 0.1074 6 8 0.2449 2.4820 -0.1090 7 6 3.5804 1.1975 0.0005 8 6 4.2717 0.0001 0.0005 9 6 3.5806 -1.1968 0.0007 10 6 2.1980 -1.1969 0.0018 11 16 1.3171 -2.7229 0.0019 12 8 2.2929 -3.7495 -0.1130 13 8 0.3883 -2.6499 1.0748 14 7 0.4210 -2.7716 -1.3899 15 6 1.0915 -2.8130 -2.6918 16 6 0.1040 -3.2887 -3.7592 17 6 0.8041 -3.3313 -5.1189 18 6 -0.1684 -3.8005 -6.1702 19 1 -1.1844 -4.0435 -5.8959 20 6 0.2388 -3.9194 -7.4821 21 7 1.4761 -3.6240 -7.8159 22 14 -0.9669 -4.5003 -8.7853 23 1 -2.2854 -4.7666 -8.1562 24 1 -1.1168 -3.4500 -9.8243 25 1 -0.4568 -5.7466 -9.4112 26 1 -0.3634 0.1334 -1.0190 27 1 -0.3634 -0.9492 0.3939 28 1 -0.3633 0.8157 0.6250 29 1 4.1203 2.1327 0.0010 30 1 5.3517 0.0001 0.0005 31 1 4.1206 -2.1322 -0.0037 32 1 -0.5479 -2.7727 -1.3431 33 1 1.4505 -1.8160 -2.9474 34 1 1.9350 -3.5017 -2.6443 35 1 -0.2550 -4.2856 -3.5036 36 1 -0.7394 -2.5999 -3.8066 37 1 1.1628 -2.3342 -5.3743 38 1 1.6478 -4.0199 -5.0718 39 1 1.7625 -3.7074 -8.7389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:55 Heat of formation + Delta-G solvation = -79.752751 kcal Electronic energy + Delta-G solvation = -25771.621649 eV Core-core repulsion = 21808.680779 eV Total energy + Delta-G solvation = -3962.940870 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.45530 -40.74609 -38.64450 -37.88642 -37.47589 -37.17345 -35.22653 -34.35326 -33.36112 -32.65819 -29.13904 -28.21503 -27.20895 -24.81183 -24.57062 -23.40617 -22.26374 -21.00583 -20.03468 -19.84124 -18.84787 -18.65205 -18.56860 -17.95656 -17.60900 -17.23596 -16.64824 -16.40634 -16.10239 -15.76583 -15.24557 -14.93662 -14.35469 -14.24596 -14.04637 -13.89829 -13.76935 -13.67098 -13.55201 -13.35372 -13.26182 -13.09344 -12.82332 -12.61942 -12.53746 -12.38122 -12.29892 -12.24180 -11.78375 -11.66484 -11.40411 -11.18009 -11.13084 -10.55515 -10.52043 -10.48563 -8.18895 -6.28414 -1.38778 -0.90886 -0.64053 0.08607 0.21055 1.41249 1.42830 1.54614 1.67744 1.91706 2.42556 2.47356 3.03311 3.09212 3.15753 3.25234 3.46799 3.67096 3.80475 3.98999 4.10539 4.18026 4.25717 4.41715 4.45157 4.57101 4.59927 4.66790 4.72401 4.86065 4.97921 5.05086 5.18384 5.23058 5.35105 5.56034 5.76879 5.88112 5.99432 6.26774 6.40355 6.89160 7.40955 8.92900 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.003193 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.458142 B = 8767.092626 C = 9594.164169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 C -0.092 4.092 4 N 0.034 4.966 5 O -0.174 6.174 6 O -0.172 6.172 7 C 0.002 3.998 8 C -0.128 4.128 9 C 0.031 3.969 10 C -0.696 4.696 11 S 2.719 3.281 12 O -0.971 6.971 13 O -0.970 6.970 14 N -1.104 6.104 15 C 0.122 3.878 16 C -0.106 4.106 17 C 0.021 3.979 18 C -0.540 4.540 19 H 0.062 0.938 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.960 3.040 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.281 1.281 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.183 0.817 30 H 0.201 0.799 31 H 0.182 0.818 32 H 0.430 0.570 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.068 0.932 37 H -0.001 1.001 38 H -0.002 1.002 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 7.908 18.966 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.080 3.920 3 C -0.176 4.176 4 N 0.548 4.452 5 O -0.387 6.387 6 O -0.384 6.384 7 C -0.017 4.017 8 C -0.147 4.147 9 C 0.012 3.988 10 C -0.782 4.782 11 S 2.807 3.193 12 O -0.961 6.961 13 O -0.960 6.960 14 N -0.867 5.867 15 C -0.004 4.004 16 C -0.145 4.145 17 C -0.017 4.017 18 C -0.578 4.578 19 H 0.080 0.920 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.785 3.215 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.200 0.800 30 H 0.218 0.782 31 H 0.199 0.801 32 H 0.268 0.732 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.828 6.700 19.472 21.401 hybrid contribution -0.818 0.897 -1.246 1.740 sum 5.010 7.597 18.226 20.372 Atomic orbital electron populations 1.22079 0.87829 1.07507 1.06739 1.19521 0.98055 0.89594 0.84849 1.21254 0.93823 0.82638 1.19904 1.43693 1.01189 1.03002 0.97323 1.94517 1.69998 1.20437 1.53742 1.94499 0.96457 1.93964 1.53498 1.21797 0.89927 1.03010 0.86958 1.21850 1.03522 0.89068 1.00253 1.21926 0.91220 1.02340 0.83344 1.31017 1.07663 1.18464 1.21054 1.01160 0.72879 0.73070 0.72163 1.93575 1.62357 1.53717 1.86405 1.93566 1.62555 1.87072 1.52794 1.55254 1.19910 1.91168 1.20381 1.21374 0.96075 1.01682 0.81253 1.21627 0.98022 1.01264 0.93573 1.19000 0.95272 0.95521 0.91935 1.21738 0.98118 1.44285 0.93701 0.92026 1.25904 0.96905 0.95669 1.01215 1.70080 1.18205 1.50166 1.18795 0.85477 0.79388 0.77852 0.78799 1.18592 1.20638 1.20644 0.86587 0.88186 0.86967 0.79984 0.78222 0.80063 0.73235 0.91159 0.90397 0.91947 0.91376 0.98277 0.98389 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 8.00 71.23 0.57 -3.15 16 2 C 0.08 1.71 5.88 -19.87 -0.12 1.60 16 3 C -0.09 -1.88 6.83 36.37 0.25 -1.64 16 4 N 0.03 0.83 4.45 -46.46 -0.21 0.63 16 5 O -0.17 -4.35 18.46 18.89 0.35 -4.00 16 6 O -0.17 -4.52 15.37 18.89 0.29 -4.23 16 7 C 0.00 0.03 9.56 22.27 0.21 0.24 16 8 C -0.13 -1.28 10.05 22.27 0.22 -1.06 16 9 C 0.03 0.44 9.55 22.27 0.21 0.65 16 10 C -0.70 -13.38 5.87 22.27 0.13 -13.25 16 11 S 2.72 60.43 4.93 -56.49 -0.28 60.15 16 12 O -0.97 -25.97 16.43 -128.00 -2.10 -28.07 16 13 O -0.97 -24.78 15.70 -128.00 -2.01 -26.79 16 14 N -1.10 -24.00 5.52 -187.48 -1.04 -25.03 16 15 C 0.12 3.32 6.24 86.38 0.54 3.86 16 16 C -0.11 -3.69 5.31 30.59 0.16 -3.53 16 17 C 0.02 1.00 4.97 29.85 0.15 1.15 16 18 C -0.54 -29.11 9.11 25.60 0.23 -28.88 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 22 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 H 0.12 2.12 8.14 -2.39 -0.02 2.11 16 27 H 0.10 1.93 4.71 -2.38 -0.01 1.92 16 28 H 0.11 2.30 5.89 -2.39 -0.01 2.28 16 29 H 0.18 1.65 7.62 -2.91 -0.02 1.63 16 30 H 0.20 0.31 8.06 -2.91 -0.02 0.28 16 31 H 0.18 1.94 7.35 -2.91 -0.02 1.92 16 32 H 0.43 7.71 8.67 -96.75 -0.84 6.87 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 2.18 7.70 -2.39 -0.02 2.16 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 39 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -72.66 346.74 0.60 -72.06 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.26 Total: 8.25 kcal Atomic # 6 Polarization: -46.52 SS G_CDS: 3.03 Total: -43.50 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -0.96 Total: -78.84 kcal Atomic # 8 Polarization: -59.61 SS G_CDS: -3.47 Total: -63.08 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 60.43 SS G_CDS: -0.28 Total: 60.15 kcal Total: -72.66 0.60 -72.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.695 kcal (2) G-P(sol) polarization free energy of solvation -72.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds