Wall clock time and date at job start Tue Mar 31 2020 14:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48492 * 109.47345 * 239.99739 * 3 2 1 5 5 H 1.48501 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47028 * 119.99618 * 3 2 1 7 7 C 1.37881 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99712 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47003 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46982 * 180.02562 * 11 10 9 13 13 S 1.65598 * 120.00068 * 164.99818 * 12 11 10 14 14 O 1.42101 * 104.27782 * 308.93190 * 13 12 11 15 15 O 1.42093 * 104.27965 * 181.07193 * 13 12 11 16 16 C 1.81399 * 104.44635 * 65.00109 * 13 12 11 17 17 C 1.50696 * 109.47232 * 179.97438 * 16 13 12 18 18 C 1.38238 * 119.99782 * 90.00108 * 17 16 13 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00155 * 269.98322 * 17 16 13 26 26 H 0.96993 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46785 * 59.99621 * 9 7 2 28 28 H 1.09000 * 109.46977 * 299.99676 * 9 7 2 29 29 H 1.09000 * 109.46505 * 60.00198 * 10 9 7 30 30 H 1.08996 * 109.47597 * 300.00337 * 10 9 7 31 31 H 1.08999 * 109.46714 * 60.00188 * 11 10 9 32 32 H 1.09000 * 109.47166 * 300.00172 * 11 10 9 33 33 H 0.96999 * 119.99923 * 345.00444 * 12 11 10 34 34 H 1.09001 * 109.46960 * 60.00357 * 16 13 12 35 35 H 1.08999 * 109.47486 * 300.00502 * 16 13 12 36 36 H 1.07991 * 120.00287 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.08000 * 120.00005 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 16 1.9176 -7.6300 0.3738 14 8 1.2147 -7.4748 1.5990 15 8 3.0940 -8.4235 0.2995 16 6 0.7735 -8.0608 -0.9663 17 6 0.2319 -9.4484 -0.7378 18 6 -0.9260 -9.6262 -0.0040 19 6 -1.4231 -10.8990 0.2052 20 6 -0.7621 -11.9940 -0.3190 21 7 -1.2941 -13.3570 -0.0945 22 8 -2.3145 -13.5135 0.5517 23 8 -0.7119 -14.3218 -0.5568 24 6 0.3991 -11.8167 -1.0478 25 6 0.8928 -10.5434 -1.2623 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5568 0.8903 29 1 2.8720 -3.6042 0.8906 30 1 2.8721 -3.6043 -0.8894 31 1 0.8535 -5.0451 -0.8886 32 1 0.8540 -5.0446 0.8914 33 1 3.3644 -5.9420 -0.2156 34 1 1.3019 -8.0298 -1.9192 35 1 -0.0502 -7.3472 -0.9844 36 1 -1.4423 -8.7708 0.4059 37 1 -2.3276 -11.0380 0.7789 38 1 0.9180 -12.6726 -1.4536 39 1 1.7970 -10.4044 -1.8363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:25 Heat of formation + Delta-G solvation = -64.640588 kcal Electronic energy + Delta-G solvation = -24426.662807 eV Core-core repulsion = 20464.377250 eV Total energy + Delta-G solvation = -3962.285557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55388 -40.16140 -37.39709 -36.92655 -36.29076 -36.09783 -34.20015 -33.36256 -32.02386 -31.00517 -29.41953 -26.53124 -25.80567 -23.82734 -23.14926 -22.39440 -20.72504 -19.82144 -19.50463 -19.03351 -17.90895 -17.80449 -17.17672 -16.80170 -16.35298 -16.08886 -15.83241 -15.33390 -14.82316 -14.71449 -14.51679 -14.44715 -13.85366 -13.36653 -13.03474 -12.77676 -12.45296 -12.39380 -12.31181 -12.14231 -12.10419 -11.89803 -11.76667 -11.66561 -11.53600 -11.48703 -10.98660 -10.88756 -10.65265 -10.10987 -10.00092 -9.90236 -9.58165 -9.39582 -9.21642 -8.45586 -6.10920 -4.13912 -0.77210 -0.05858 0.35277 0.88899 0.97758 2.46824 2.65879 3.26441 3.31300 3.31586 3.33688 3.64516 3.71136 3.88077 3.93340 4.25991 4.28046 4.37171 4.58411 4.68389 4.84702 5.07578 5.10596 5.16008 5.18602 5.25297 5.45150 5.46868 5.67332 5.70862 5.90538 6.00363 6.41730 6.60432 6.80487 6.95920 7.25850 7.51362 7.63321 7.87067 8.28545 8.92278 9.50866 11.00272 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.002025 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.790880 B =13825.088110 C =14320.270072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.116 4.116 11 C 0.107 3.893 12 N -1.112 6.112 13 S 2.611 3.389 14 O -0.942 6.942 15 O -0.954 6.954 16 C -0.607 4.607 17 C -0.034 4.034 18 C -0.105 4.105 19 C -0.049 4.049 20 C -0.043 4.043 21 N 0.028 4.972 22 O -0.156 6.156 23 O -0.158 6.158 24 C -0.051 4.051 25 C -0.107 4.107 26 H 0.262 0.738 27 H 0.018 0.982 28 H 0.020 0.980 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.419 0.581 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -21.786 -4.341 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.155 4.155 11 C -0.018 4.018 12 N -0.873 5.873 13 S 2.701 3.299 14 O -0.932 6.932 15 O -0.944 6.944 16 C -0.731 4.731 17 C -0.036 4.036 18 C -0.125 4.125 19 C -0.068 4.068 20 C -0.126 4.126 21 N 0.548 4.452 22 O -0.373 6.373 23 O -0.374 6.374 24 C -0.070 4.070 25 C -0.126 4.126 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.254 0.746 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.178 0.822 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.319 -21.530 -3.669 21.843 hybrid contribution 0.287 0.943 -0.793 1.266 sum -0.032 -20.587 -4.462 21.065 Atomic orbital electron populations 1.69937 1.06057 1.26908 1.50450 1.25025 0.94885 0.99351 0.95171 0.86629 0.79566 0.82979 0.78649 1.20251 1.21258 1.20188 1.21161 0.93035 0.90903 1.51147 0.92633 1.19079 0.93914 0.91053 0.97605 1.21854 0.99676 0.92569 1.01444 1.21692 0.91442 0.87125 1.01563 1.55571 1.19605 1.23927 1.88217 1.05085 0.75242 0.73527 0.76053 1.93635 1.76037 1.84988 1.38493 1.93606 1.44546 1.69168 1.87123 1.29955 1.19002 1.01379 1.22805 1.19486 0.95031 0.93203 0.95909 1.21327 0.95482 0.97472 0.98172 1.21115 0.99769 0.90208 0.95714 1.21241 0.99975 0.82335 1.09084 1.43597 1.00056 1.03033 0.98516 1.94556 1.12870 1.92179 1.37692 1.94549 1.60002 1.31416 1.51468 1.21087 0.92419 0.99455 0.93995 1.21268 1.00965 0.90312 1.00089 0.92823 0.96328 0.96142 0.92253 0.92480 0.92035 0.90289 0.74589 0.82882 0.82748 0.82313 0.82130 0.82228 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.12 -2.03 5.29 -26.73 -0.14 -2.17 16 11 C 0.11 1.42 6.13 -4.04 -0.02 1.40 16 12 N -1.11 -12.04 5.89 -10.61 -0.06 -12.10 16 13 S 2.61 27.14 5.44 -107.50 -0.58 26.55 16 14 O -0.94 -13.14 17.50 -57.54 -1.01 -14.14 16 15 O -0.95 -12.08 18.08 -57.54 -1.04 -13.12 16 16 C -0.61 -3.85 6.20 36.00 0.22 -3.63 16 17 C -0.03 -0.25 5.14 -104.62 -0.54 -0.79 16 18 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 19 C -0.05 -0.38 9.56 -39.58 -0.38 -0.76 16 20 C -0.04 -0.39 6.85 -79.95 -0.55 -0.94 16 21 N 0.03 0.31 4.45 33.96 0.15 0.46 16 22 O -0.16 -1.84 18.45 -29.46 -0.54 -2.38 16 23 O -0.16 -1.84 18.45 -29.46 -0.54 -2.38 16 24 C -0.05 -0.37 9.56 -39.58 -0.38 -0.75 16 25 C -0.11 -0.72 9.70 -39.58 -0.38 -1.10 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 33 H 0.42 4.05 8.62 -34.47 -0.30 3.76 16 34 H 0.15 0.58 8.08 -51.92 -0.42 0.16 16 35 H 0.15 0.72 8.09 -51.92 -0.42 0.30 16 36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.16 0.99 7.61 -52.48 -0.40 0.59 16 38 H 0.16 0.90 7.61 -52.48 -0.40 0.50 16 39 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -34.77 360.65 -10.42 -45.19 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.84 Total: -2.08 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.10 Total: -22.30 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.83 Total: -36.54 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -3.13 Total: -32.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 27.14 SS G_CDS: -0.58 Total: 26.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.77 -10.42 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.454 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds