Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99846 * 2 1 4 4 H 1.48492 * 109.47345 * 239.99739 * 3 2 1 5 5 H 1.48501 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47028 * 119.99618 * 3 2 1 7 7 C 1.37881 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99712 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47121 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47003 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46982 * 180.02562 * 11 10 9 13 13 S 1.65598 * 120.00068 * 164.99818 * 12 11 10 14 14 O 1.42101 * 104.27782 * 308.93190 * 13 12 11 15 15 O 1.42093 * 104.27965 * 181.07193 * 13 12 11 16 16 C 1.81399 * 104.44635 * 65.00109 * 13 12 11 17 17 C 1.50696 * 109.47232 * 179.97438 * 16 13 12 18 18 C 1.38238 * 119.99782 * 90.00108 * 17 16 13 19 19 C 1.38234 * 119.99693 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00240 * 0.02562 * 19 18 17 21 21 N 1.48026 * 119.99930 * 179.97438 * 20 19 18 22 22 O 1.21793 * 119.99867 * 0.02562 * 21 20 19 23 23 O 1.21799 * 119.99956 * 179.97438 * 21 20 19 24 24 C 1.38233 * 120.00037 * 0.26327 * 20 19 18 25 25 C 1.38234 * 120.00155 * 269.98322 * 17 16 13 26 26 H 0.96993 * 120.00014 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46785 * 59.99621 * 9 7 2 28 28 H 1.09000 * 109.46977 * 299.99676 * 9 7 2 29 29 H 1.09000 * 109.46505 * 60.00198 * 10 9 7 30 30 H 1.08996 * 109.47597 * 300.00337 * 10 9 7 31 31 H 1.08999 * 109.46714 * 60.00188 * 11 10 9 32 32 H 1.09000 * 109.47166 * 300.00172 * 11 10 9 33 33 H 0.96999 * 119.99923 * 345.00444 * 12 11 10 34 34 H 1.09001 * 109.46960 * 60.00357 * 16 13 12 35 35 H 1.08999 * 109.47486 * 300.00502 * 16 13 12 36 36 H 1.07991 * 120.00287 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00214 * 179.97438 * 19 18 17 38 38 H 1.08004 * 119.99939 * 179.72815 * 24 20 19 39 39 H 1.08000 * 120.00005 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 16 1.9176 -7.6300 0.3738 14 8 1.2147 -7.4748 1.5990 15 8 3.0940 -8.4235 0.2995 16 6 0.7735 -8.0608 -0.9663 17 6 0.2319 -9.4484 -0.7378 18 6 -0.9260 -9.6262 -0.0040 19 6 -1.4231 -10.8990 0.2052 20 6 -0.7621 -11.9940 -0.3190 21 7 -1.2941 -13.3570 -0.0945 22 8 -2.3145 -13.5135 0.5517 23 8 -0.7119 -14.3218 -0.5568 24 6 0.3991 -11.8167 -1.0478 25 6 0.8928 -10.5434 -1.2623 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5568 0.8903 29 1 2.8720 -3.6042 0.8906 30 1 2.8721 -3.6043 -0.8894 31 1 0.8535 -5.0451 -0.8886 32 1 0.8540 -5.0446 0.8914 33 1 3.3644 -5.9420 -0.2156 34 1 1.3019 -8.0298 -1.9192 35 1 -0.0502 -7.3472 -0.9844 36 1 -1.4423 -8.7708 0.4059 37 1 -2.3276 -11.0380 0.7789 38 1 0.9180 -12.6726 -1.4536 39 1 1.7970 -10.4044 -1.8363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = -88.191242 kcal Electronic energy + Delta-G solvation = -24427.684040 eV Core-core repulsion = 20464.377250 eV Total energy + Delta-G solvation = -3963.306790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.33968 -40.73524 -38.31171 -37.76379 -37.38135 -37.09038 -35.15215 -34.79695 -32.61868 -32.55797 -30.07610 -28.17666 -26.51367 -24.75228 -24.36387 -23.05940 -22.18602 -20.50577 -20.38894 -19.84020 -18.72044 -18.65752 -18.54135 -17.88586 -17.33919 -16.77213 -16.61629 -16.44458 -16.03213 -15.84328 -15.65891 -14.96344 -14.47116 -14.30045 -14.07574 -13.84637 -13.75414 -13.53099 -13.29873 -13.21464 -13.16063 -12.83407 -12.76086 -12.54306 -12.50737 -12.49188 -12.37239 -12.34858 -12.30266 -11.66673 -11.36936 -11.14151 -10.66420 -10.52816 -10.51204 -10.24044 -8.17951 -6.27380 -1.51241 -0.83459 -0.17028 0.17124 0.26542 1.42758 1.44192 1.51917 1.64497 2.09135 2.42914 2.63147 3.05457 3.09329 3.16194 3.27413 3.40179 3.64756 3.75549 4.03205 4.06389 4.21058 4.30753 4.37778 4.52026 4.58033 4.65483 4.66272 4.75185 4.94209 5.02846 5.04746 5.22483 5.26301 5.32955 5.56907 5.79708 5.89773 6.07280 6.28413 6.38962 6.89999 7.41554 8.93145 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.002025 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.790880 B =13825.088110 C =14320.270072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.000 4.000 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.114 3.886 12 N -1.110 6.110 13 S 2.615 3.385 14 O -0.986 6.986 15 O -0.980 6.980 16 C -0.582 4.582 17 C -0.044 4.044 18 C -0.109 4.109 19 C -0.055 4.055 20 C -0.060 4.060 21 N 0.029 4.971 22 O -0.180 6.180 23 O -0.172 6.172 24 C -0.053 4.053 25 C -0.105 4.105 26 H 0.263 0.737 27 H 0.006 0.994 28 H -0.005 1.005 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.424 0.576 34 H 0.190 0.810 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -21.565 -5.890 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.012 4.012 12 N -0.871 5.871 13 S 2.710 3.290 14 O -0.976 6.976 15 O -0.970 6.970 16 C -0.711 4.711 17 C -0.046 4.046 18 C -0.129 4.129 19 C -0.074 4.074 20 C -0.143 4.143 21 N 0.545 4.455 22 O -0.393 6.393 23 O -0.387 6.387 24 C -0.072 4.072 25 C -0.124 4.124 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.208 0.792 35 H 0.197 0.803 36 H 0.194 0.806 37 H 0.187 0.813 38 H 0.192 0.808 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.677 -21.309 -5.169 21.937 hybrid contribution -0.015 0.847 -0.353 0.917 sum 0.662 -20.462 -5.521 21.204 Atomic orbital electron populations 1.70058 1.07559 1.27728 1.51732 1.25906 0.95747 1.03096 0.95009 0.85595 0.78326 0.78630 0.79052 1.19131 1.21136 1.19614 1.21694 0.93602 0.92514 1.50309 0.92226 1.19003 0.94527 0.92513 0.95697 1.21624 0.98580 0.92759 1.01690 1.21467 0.91349 0.85684 1.02695 1.55352 1.19750 1.23513 1.88507 1.04720 0.75107 0.72796 0.76345 1.93586 1.76556 1.85315 1.42138 1.93574 1.46414 1.69266 1.87776 1.29745 1.18486 1.01321 1.21576 1.19706 0.95146 0.93795 0.95968 1.21624 0.95731 0.97675 0.97838 1.21310 1.00158 0.90193 0.95715 1.21472 1.01085 0.81164 1.10581 1.43914 0.99774 1.03833 0.97994 1.94541 1.13617 1.92620 1.38533 1.94524 1.60013 1.32451 1.51695 1.21357 0.91831 1.00523 0.93473 1.21642 1.01506 0.89595 0.99654 0.92843 0.97522 0.98685 0.93044 0.91217 0.89021 0.91265 0.73961 0.79243 0.80309 0.80594 0.81295 0.80845 0.79810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.84 13.29 21.45 0.28 -53.55 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -28.84 9.11 25.60 0.23 -28.61 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.02 0.96 4.97 29.85 0.15 1.11 16 10 C -0.11 -3.64 5.29 30.59 0.16 -3.47 16 11 C 0.11 2.80 6.13 86.38 0.53 3.33 16 12 N -1.11 -21.55 5.89 -187.48 -1.10 -22.65 16 13 S 2.61 48.70 5.44 -56.49 -0.31 48.39 16 14 O -0.99 -26.60 17.50 -127.65 -2.23 -28.84 16 15 O -0.98 -22.99 18.08 -127.65 -2.31 -25.29 16 16 C -0.58 -4.95 6.20 71.23 0.44 -4.51 16 17 C -0.04 -0.50 5.14 -19.87 -0.10 -0.60 16 18 C -0.11 -1.32 9.70 22.27 0.22 -1.10 16 19 C -0.05 -0.78 9.56 22.27 0.21 -0.57 16 20 C -0.06 -1.01 6.85 36.37 0.25 -0.77 16 21 N 0.03 0.64 4.45 -46.46 -0.21 0.44 16 22 O -0.18 -4.34 18.45 18.89 0.35 -3.99 16 23 O -0.17 -3.99 18.45 18.89 0.35 -3.65 16 24 C -0.05 -0.68 9.56 22.27 0.21 -0.46 16 25 C -0.10 -1.07 9.70 22.27 0.22 -0.85 16 26 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 27 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 28 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.85 7.69 -2.39 -0.02 1.83 16 33 H 0.42 7.31 8.62 -96.75 -0.83 6.47 16 34 H 0.19 0.34 8.08 -2.39 -0.02 0.33 16 35 H 0.18 0.80 8.09 -2.39 -0.02 0.78 16 36 H 0.18 1.43 8.06 -2.92 -0.02 1.40 16 37 H 0.17 1.99 7.61 -2.91 -0.02 1.96 16 38 H 0.17 1.64 7.61 -2.91 -0.02 1.62 16 39 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -76.63 360.65 0.08 -76.55 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.25 Total: 4.23 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 2.98 Total: -36.01 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.03 Total: -75.77 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -3.84 Total: -61.77 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 48.70 SS G_CDS: -0.31 Total: 48.39 kcal Total: -76.63 0.08 -76.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.638 kcal (2) G-P(sol) polarization free energy of solvation -76.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds