Wall clock time and date at job start Tue Mar 31 2020 15:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 120.00073 * 2 1 4 4 C 1.38215 * 119.99753 * 180.26170 * 3 2 1 5 5 C 1.38257 * 120.00007 * 359.48590 * 4 3 2 6 6 N 1.48018 * 120.00200 * 180.27781 * 5 4 3 7 7 O 1.21801 * 119.99578 * 0.02562 * 6 5 4 8 8 O 1.21803 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.38220 * 119.99987 * 0.26030 * 5 4 3 10 10 C 1.38215 * 119.99995 * 179.77433 * 2 1 3 11 11 S 1.76201 * 119.99846 * 359.97438 * 10 2 1 12 12 O 1.42102 * 106.40434 * 178.42701 * 11 10 2 13 13 O 1.42099 * 106.40256 * 311.34642 * 11 10 2 14 14 N 1.65597 * 107.21870 * 64.88528 * 11 10 2 15 15 C 1.46507 * 119.99732 * 63.46611 * 14 11 10 16 16 C 1.52998 * 109.46863 * 163.84121 * 15 14 11 17 17 C 1.53004 * 109.47097 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47463 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99682 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00522 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00702 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47043 * 59.99801 * 22 20 18 24 24 H 1.48499 * 109.47583 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46839 * 300.00138 * 22 20 18 26 26 H 1.09000 * 109.46806 * 264.74126 * 1 2 3 27 27 H 1.08999 * 109.47102 * 24.73910 * 1 2 3 28 28 H 1.08995 * 109.47133 * 144.73564 * 1 2 3 29 29 H 1.07997 * 120.00233 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.99878 * 179.76569 * 4 3 2 31 31 H 1.07999 * 120.00022 * 179.97438 * 9 5 4 32 32 H 0.97001 * 120.00755 * 243.46300 * 14 11 10 33 33 H 1.09001 * 109.46776 * 283.83512 * 15 14 11 34 34 H 1.08992 * 109.47100 * 43.83713 * 15 14 11 35 35 H 1.09000 * 109.47424 * 299.99465 * 16 15 14 36 36 H 1.09005 * 109.47708 * 59.99642 * 16 15 14 37 37 H 1.09000 * 109.46646 * 300.00062 * 17 16 15 38 38 H 1.08998 * 109.47310 * 59.99590 * 17 16 15 39 39 H 0.96997 * 120.00468 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0055 5 6 4.2717 -0.0001 -0.0002 6 7 5.7519 -0.0001 0.0002 7 8 6.3609 1.0547 -0.0037 8 8 6.3609 -1.0550 0.0043 9 6 3.5806 -1.1970 0.0051 10 6 2.1981 -1.1970 0.0047 11 16 1.3170 -2.7229 0.0114 12 8 2.2964 -3.7519 -0.0221 13 8 0.3369 -2.6158 1.0347 14 7 0.4900 -2.8177 -1.4201 15 6 1.2231 -2.8717 -2.6874 16 6 0.2872 -3.3534 -3.7978 17 6 1.0526 -3.4092 -5.1214 18 6 0.1310 -3.8842 -6.2151 19 1 -0.8977 -4.1228 -5.9886 20 6 0.6009 -4.0142 -7.5047 21 7 1.8534 -3.7231 -7.7805 22 14 -0.5412 -4.6036 -8.8601 23 1 -1.6842 -3.6641 -8.9878 24 1 0.2016 -4.6577 -10.1448 25 1 -1.0491 -5.9583 -8.5252 26 1 -0.3633 -0.0942 1.0234 27 1 -0.3633 0.9333 -0.4301 28 1 -0.3633 -0.8390 -0.5933 29 1 1.6584 2.1327 0.0004 30 1 4.1205 2.1325 -0.0093 31 1 4.1205 -2.1323 0.0088 32 1 -0.4798 -2.8375 -1.4197 33 1 1.5973 -1.8779 -2.9333 34 1 2.0609 -3.5624 -2.5933 35 1 -0.0871 -4.3471 -3.5520 36 1 -0.5508 -2.6626 -3.8919 37 1 1.4265 -2.4152 -5.3670 38 1 1.8907 -4.0997 -5.0277 39 1 2.1840 -3.8141 -8.6878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:00 Heat of formation + Delta-G solvation = -63.655631 kcal Electronic energy + Delta-G solvation = -25539.570273 eV Core-core repulsion = 21577.327427 eV Total energy + Delta-G solvation = -3962.242846 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44822 -40.11329 -37.58431 -36.80682 -36.27284 -36.12764 -34.02645 -33.32897 -32.21045 -31.01466 -29.09619 -26.53459 -25.52889 -24.26757 -23.15674 -22.40614 -20.80882 -20.30182 -19.24936 -18.94011 -17.80260 -17.61324 -16.89662 -16.88246 -16.41378 -16.32331 -15.60951 -14.93993 -14.82215 -14.67794 -14.55346 -14.40412 -13.25287 -13.02747 -12.93818 -12.76247 -12.68432 -12.43386 -12.38165 -12.22003 -12.16396 -11.80598 -11.68808 -11.57263 -11.35808 -11.28227 -10.96866 -10.87575 -10.64205 -10.34461 -10.05583 -9.90162 -9.59035 -9.45568 -9.20757 -8.43504 -6.08332 -4.11827 -0.59046 -0.06794 0.15760 0.90935 1.06690 2.43702 2.77075 3.27801 3.33230 3.34769 3.38304 3.72676 3.89246 3.97470 4.09306 4.28791 4.38708 4.50824 4.78446 4.85941 4.96797 5.01400 5.12018 5.13299 5.27698 5.38605 5.42634 5.48073 5.69088 5.72701 5.91213 6.09204 6.42277 6.60410 6.77853 6.94105 7.37216 7.53828 7.65532 7.89264 8.30251 8.94421 9.52977 11.02859 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003196 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.949310 B = 8759.311785 C = 9808.544136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.071 3.929 3 C -0.140 4.140 4 C -0.001 4.001 5 C -0.073 4.073 6 N 0.029 4.971 7 O -0.159 6.159 8 O -0.150 6.150 9 C 0.051 3.949 10 C -0.684 4.684 11 S 2.697 3.303 12 O -0.945 6.945 13 O -0.953 6.953 14 N -1.110 6.110 15 C 0.110 3.890 16 C -0.115 4.115 17 C 0.021 3.979 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.420 0.580 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.021 0.979 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 11.318 18.529 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.020 4.020 5 C -0.157 4.157 6 N 0.550 4.450 7 O -0.374 6.374 8 O -0.367 6.367 9 C 0.031 3.969 10 C -0.768 4.768 11 S 2.783 3.217 12 O -0.935 6.935 13 O -0.943 6.943 14 N -0.873 5.873 15 C -0.015 4.015 16 C -0.154 4.154 17 C -0.017 4.017 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.129 0.871 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.192 0.808 32 H 0.256 0.744 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.039 0.961 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.998 10.755 19.047 21.965 hybrid contribution -0.181 0.492 -1.211 1.319 sum -2.180 11.247 17.837 21.199 Atomic orbital electron populations 1.21477 0.88615 1.05545 1.05579 1.20060 0.97213 0.91542 0.84176 1.21268 0.92587 0.99021 1.03014 1.21339 0.94874 0.97353 0.88466 1.21157 0.80060 0.96997 1.17446 1.43492 1.03191 1.00660 0.97664 1.94535 1.68776 1.20656 1.53473 1.94598 1.68723 1.20442 1.52972 1.20841 0.92515 0.98659 0.84926 1.31278 1.04541 1.21901 1.19052 1.02070 0.73589 0.73252 0.72807 1.93623 1.61642 1.52109 1.86155 1.93615 1.59050 1.86756 1.54874 1.55546 1.18843 1.90599 1.22270 1.21688 0.96109 1.01358 0.82329 1.21858 0.97933 1.00475 0.95140 1.19077 0.95639 0.97545 0.89404 1.21144 0.96974 1.45092 0.93091 0.92629 1.25018 0.95099 0.95409 0.98837 1.69942 1.14406 1.48541 1.20369 0.86636 0.80720 0.79371 0.81129 1.20263 1.21246 1.20180 0.87144 0.88745 0.89886 0.82489 0.82106 0.80843 0.74400 0.92147 0.90173 0.92128 0.92485 0.96397 0.96111 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.61 36.01 0.31 -0.67 16 2 C 0.07 0.59 5.87 -104.62 -0.61 -0.02 16 3 C -0.14 -0.94 9.68 -39.58 -0.38 -1.33 16 4 C 0.00 -0.01 9.56 -39.58 -0.38 -0.39 16 5 C -0.07 -0.82 6.85 -79.95 -0.55 -1.36 16 6 N 0.03 0.39 4.45 33.96 0.15 0.54 16 7 O -0.16 -2.11 18.45 -29.46 -0.54 -2.65 16 8 O -0.15 -2.18 18.45 -29.46 -0.54 -2.72 16 9 C 0.05 0.58 9.06 -39.58 -0.36 0.22 16 10 C -0.68 -7.15 5.85 -39.59 -0.23 -7.38 16 11 S 2.70 31.57 4.94 -107.50 -0.53 31.04 16 12 O -0.95 -14.12 16.48 -57.17 -0.94 -15.06 16 13 O -0.95 -11.93 16.48 -57.17 -0.94 -12.87 16 14 N -1.11 -12.34 4.78 -10.61 -0.05 -12.39 16 15 C 0.11 1.56 6.21 -4.04 -0.03 1.54 16 16 C -0.11 -2.03 5.30 -26.73 -0.14 -2.17 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 19 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 22 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.11 0.64 8.01 -51.93 -0.42 0.23 16 27 H 0.09 0.37 8.05 -51.93 -0.42 -0.05 16 28 H 0.08 0.55 5.46 -51.93 -0.28 0.26 16 29 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.16 0.97 7.61 -52.49 -0.40 0.57 16 31 H 0.17 1.99 6.89 -52.49 -0.36 1.63 16 32 H 0.42 3.75 8.32 -34.48 -0.29 3.47 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.20 7.76 -51.93 -0.40 0.80 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -33.96 351.63 -9.95 -43.92 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.65 Total: -1.63 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.92 Total: -24.09 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.84 Total: -37.17 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -2.97 Total: -33.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 31.57 SS G_CDS: -0.53 Total: 31.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.96 -9.95 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.738 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds