Wall clock time and date at job start Tue Mar 31 2020 15:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38260 * 120.00073 * 2 1 4 4 C 1.38215 * 119.99753 * 180.26170 * 3 2 1 5 5 C 1.38257 * 120.00007 * 359.48590 * 4 3 2 6 6 N 1.48018 * 120.00200 * 180.27781 * 5 4 3 7 7 O 1.21801 * 119.99578 * 0.02562 * 6 5 4 8 8 O 1.21803 * 120.00290 * 180.02562 * 6 5 4 9 9 C 1.38220 * 119.99987 * 0.26030 * 5 4 3 10 10 C 1.38215 * 119.99995 * 179.77433 * 2 1 3 11 11 S 1.76201 * 119.99846 * 359.97438 * 10 2 1 12 12 O 1.42102 * 106.40434 * 178.42701 * 11 10 2 13 13 O 1.42099 * 106.40256 * 311.34642 * 11 10 2 14 14 N 1.65597 * 107.21870 * 64.88528 * 11 10 2 15 15 C 1.46507 * 119.99732 * 63.46611 * 14 11 10 16 16 C 1.52998 * 109.46863 * 163.84121 * 15 14 11 17 17 C 1.53004 * 109.47097 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47463 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99682 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00522 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00702 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47043 * 59.99801 * 22 20 18 24 24 H 1.48499 * 109.47583 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46839 * 300.00138 * 22 20 18 26 26 H 1.09000 * 109.46806 * 264.74126 * 1 2 3 27 27 H 1.08999 * 109.47102 * 24.73910 * 1 2 3 28 28 H 1.08995 * 109.47133 * 144.73564 * 1 2 3 29 29 H 1.07997 * 120.00233 * 0.02562 * 3 2 1 30 30 H 1.07995 * 119.99878 * 179.76569 * 4 3 2 31 31 H 1.07999 * 120.00022 * 179.97438 * 9 5 4 32 32 H 0.97001 * 120.00755 * 243.46300 * 14 11 10 33 33 H 1.09001 * 109.46776 * 283.83512 * 15 14 11 34 34 H 1.08992 * 109.47100 * 43.83713 * 15 14 11 35 35 H 1.09000 * 109.47424 * 299.99465 * 16 15 14 36 36 H 1.09005 * 109.47708 * 59.99642 * 16 15 14 37 37 H 1.09000 * 109.46646 * 300.00062 * 17 16 15 38 38 H 1.08998 * 109.47310 * 59.99590 * 17 16 15 39 39 H 0.96997 * 120.00468 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0055 5 6 4.2717 -0.0001 -0.0002 6 7 5.7519 -0.0001 0.0002 7 8 6.3609 1.0547 -0.0037 8 8 6.3609 -1.0550 0.0043 9 6 3.5806 -1.1970 0.0051 10 6 2.1981 -1.1970 0.0047 11 16 1.3170 -2.7229 0.0114 12 8 2.2964 -3.7519 -0.0221 13 8 0.3369 -2.6158 1.0347 14 7 0.4900 -2.8177 -1.4201 15 6 1.2231 -2.8717 -2.6874 16 6 0.2872 -3.3534 -3.7978 17 6 1.0526 -3.4092 -5.1214 18 6 0.1310 -3.8842 -6.2151 19 1 -0.8977 -4.1228 -5.9886 20 6 0.6009 -4.0142 -7.5047 21 7 1.8534 -3.7231 -7.7805 22 14 -0.5412 -4.6036 -8.8601 23 1 -1.6842 -3.6641 -8.9878 24 1 0.2016 -4.6577 -10.1448 25 1 -1.0491 -5.9583 -8.5252 26 1 -0.3633 -0.0942 1.0234 27 1 -0.3633 0.9333 -0.4301 28 1 -0.3633 -0.8390 -0.5933 29 1 1.6584 2.1327 0.0004 30 1 4.1205 2.1325 -0.0093 31 1 4.1205 -2.1323 0.0088 32 1 -0.4798 -2.8375 -1.4197 33 1 1.5973 -1.8779 -2.9333 34 1 2.0609 -3.5624 -2.5933 35 1 -0.0871 -4.3471 -3.5520 36 1 -0.5508 -2.6626 -3.8919 37 1 1.4265 -2.4152 -5.3670 38 1 1.8907 -4.0997 -5.0277 39 1 2.1840 -3.8141 -8.6878 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:59 Heat of formation + Delta-G solvation = -86.386559 kcal Electronic energy + Delta-G solvation = -25540.555960 eV Core-core repulsion = 21577.327427 eV Total energy + Delta-G solvation = -3963.228533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.41373 -40.84009 -38.61350 -37.82358 -37.52198 -37.17237 -35.25833 -34.65542 -32.92306 -32.68900 -29.82888 -28.24622 -26.33941 -25.00191 -24.82191 -23.15651 -22.29441 -21.28991 -20.25342 -19.92139 -18.78832 -18.64503 -18.54037 -17.77958 -17.55401 -17.06547 -16.65425 -16.42599 -16.12178 -15.75022 -15.40363 -15.20649 -14.32035 -14.14140 -13.90112 -13.84621 -13.61318 -13.50536 -13.41815 -13.36951 -13.28514 -13.12307 -12.84332 -12.76471 -12.54149 -12.48154 -12.42758 -12.35719 -12.16597 -11.68725 -11.41035 -11.18667 -11.06642 -10.60388 -10.53660 -10.51495 -8.18568 -6.29188 -1.44064 -0.95706 -0.67319 0.05097 0.18490 1.42458 1.44635 1.52381 1.64320 1.90200 2.42583 2.46176 3.00282 3.15771 3.19119 3.28455 3.39535 3.57571 3.73828 3.96770 4.12438 4.22236 4.26636 4.34963 4.43589 4.47923 4.59793 4.62649 4.87271 4.90426 4.95751 5.07107 5.16684 5.21589 5.27360 5.54661 5.75095 5.87073 5.99728 6.25237 6.32505 6.88538 7.40465 8.92914 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012376 B = 0.003196 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.949310 B = 8759.311785 C = 9808.544136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.075 3.925 3 C -0.123 4.123 4 C 0.004 3.996 5 C -0.091 4.091 6 N 0.030 4.970 7 O -0.143 6.143 8 O -0.206 6.206 9 C 0.033 3.967 10 C -0.692 4.692 11 S 2.715 3.285 12 O -0.985 6.985 13 O -0.958 6.958 14 N -1.099 6.099 15 C 0.120 3.880 16 C -0.103 4.103 17 C 0.019 3.981 18 C -0.541 4.541 19 H 0.065 0.935 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.287 1.287 25 H -0.269 1.269 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.205 0.795 30 H 0.187 0.813 31 H 0.159 0.841 32 H 0.432 0.568 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.000 1.000 38 H -0.009 1.009 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 13.670 18.921 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 C -0.141 4.141 4 C -0.014 4.014 5 C -0.175 4.175 6 N 0.546 4.454 7 O -0.366 6.366 8 O -0.411 6.411 9 C 0.013 3.987 10 C -0.778 4.778 11 S 2.803 3.197 12 O -0.975 6.975 13 O -0.948 6.948 14 N -0.863 5.863 15 C -0.006 4.006 16 C -0.142 4.142 17 C -0.019 4.019 18 C -0.580 4.580 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.787 3.213 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.194 1.194 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.097 0.903 29 H 0.222 0.778 30 H 0.205 0.795 31 H 0.176 0.824 32 H 0.271 0.729 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.018 0.982 38 H 0.010 0.990 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.804 12.973 19.459 23.876 hybrid contribution 0.625 -0.088 -1.281 1.428 sum -4.179 12.885 18.178 22.670 Atomic orbital electron populations 1.21686 0.86805 1.07251 1.06274 1.20491 0.98545 0.91133 0.82511 1.21812 0.91796 1.00169 1.00343 1.21794 0.95724 0.96959 0.86968 1.21334 0.78419 0.98232 1.19533 1.43814 1.04285 1.00245 0.97021 1.94483 1.69615 1.20473 1.51999 1.94605 1.69718 1.20848 1.55948 1.20793 0.93175 0.98583 0.86153 1.30959 1.03850 1.22079 1.20939 1.01260 0.72873 0.73121 0.72429 1.93579 1.62765 1.54571 1.86599 1.93602 1.59285 1.87058 1.54896 1.55235 1.19440 1.90802 1.20836 1.21371 0.95107 1.01646 0.82471 1.21613 0.98197 1.01363 0.93017 1.19005 0.95067 0.95463 0.92319 1.21676 0.97795 1.44440 0.94041 0.91702 1.25950 0.96582 0.95654 1.01646 1.70085 1.16403 1.50073 1.20869 0.85547 0.78807 0.79221 0.77751 1.18884 1.21310 1.19389 0.86348 0.85414 0.90305 0.77779 0.79539 0.82395 0.72912 0.90793 0.91590 0.92038 0.90577 0.98198 0.99047 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.61 71.24 0.61 -0.77 16 2 C 0.07 0.99 5.87 -19.86 -0.12 0.87 16 3 C -0.12 -1.10 9.68 22.27 0.22 -0.88 16 4 C 0.00 0.06 9.56 22.27 0.21 0.27 16 5 C -0.09 -2.00 6.85 36.38 0.25 -1.75 16 6 N 0.03 0.83 4.45 -46.46 -0.21 0.62 16 7 O -0.14 -3.71 18.45 18.89 0.35 -3.36 16 8 O -0.21 -6.52 18.45 18.88 0.35 -6.17 16 9 C 0.03 0.78 9.06 22.27 0.20 0.98 16 10 C -0.69 -13.77 5.85 22.27 0.13 -13.63 16 11 S 2.71 62.40 4.94 -56.49 -0.28 62.13 16 12 O -0.99 -30.65 16.48 -128.00 -2.11 -32.76 16 13 O -0.96 -22.74 16.48 -128.00 -2.11 -24.85 16 14 N -1.10 -23.06 4.78 -187.49 -0.90 -23.95 16 15 C 0.12 3.35 6.21 86.38 0.54 3.89 16 16 C -0.10 -3.55 5.30 30.60 0.16 -3.39 16 17 C 0.02 0.95 4.97 29.85 0.15 1.09 16 18 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 19 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 21 N -0.93 -55.54 13.29 21.44 0.28 -55.25 16 22 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H 0.12 0.91 8.01 -2.39 -0.02 0.89 16 27 H 0.13 0.26 8.05 -2.39 -0.02 0.24 16 28 H 0.08 0.76 5.46 -2.39 -0.01 0.75 16 29 H 0.21 -0.07 8.06 -2.91 -0.02 -0.09 16 30 H 0.19 1.52 7.61 -2.91 -0.02 1.49 16 31 H 0.16 4.07 6.89 -2.91 -0.02 4.05 16 32 H 0.43 6.81 8.32 -96.74 -0.81 6.00 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.04 7.76 -2.39 -0.02 2.03 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 39 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -76.15 351.63 0.75 -75.41 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 0.29 Total: 5.15 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 3.05 Total: -41.73 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -0.82 Total: -78.59 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -3.52 Total: -67.13 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 62.40 SS G_CDS: -0.28 Total: 62.13 kcal Total: -76.15 0.75 -75.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.981 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds