Wall clock time and date at job start Tue Mar 31 2020 14:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42105 * 109.47364 * 296.39507 * 12 11 10 14 14 C 1.81401 * 103.00187 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.46970 * 179.97438 * 14 12 11 16 16 C 1.38139 * 119.98746 * 90.00333 * 15 14 12 17 17 C 1.38432 * 120.00732 * 180.02562 * 16 15 14 18 18 F 1.35100 * 119.98492 * 180.09461 * 17 16 15 19 19 C 1.38439 * 120.03029 * 0.07132 * 17 16 15 20 20 C 1.38221 * 120.09170 * 359.93913 * 19 17 16 21 21 C 1.38618 * 119.93967 * 359.69302 * 20 19 17 22 22 O 1.36021 * 120.52948 * 180.12093 * 21 20 19 23 23 C 1.43054 * 116.91244 * 343.78141 * 22 21 20 24 24 O 1.43261 * 108.60177 * 47.25873 * 23 22 21 25 25 C 1.43079 * 113.04266 * 294.54378 * 24 23 22 26 26 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47330 * 300.00431 * 14 12 11 34 34 H 1.09006 * 109.46769 * 60.00554 * 14 12 11 35 35 H 1.07999 * 119.99202 * 359.97438 * 16 15 14 36 36 H 1.08007 * 119.95679 * 179.97438 * 19 17 16 37 37 H 1.08999 * 109.61524 * 287.52916 * 23 22 21 38 38 H 1.08990 * 109.61915 * 166.99323 * 23 22 21 39 39 H 1.08999 * 109.49875 * 288.65110 * 25 24 23 40 40 H 1.08993 * 109.52603 * 168.56198 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 16 6.1561 -4.3469 -0.0010 13 8 5.7525 -4.9927 1.1987 14 6 7.9586 -4.1426 -0.0002 15 6 8.6177 -5.4978 -0.0002 16 6 8.9203 -6.1184 -1.1967 17 6 9.5253 -7.3635 -1.1972 18 9 9.8228 -7.9692 -2.3676 19 6 9.8261 -7.9881 0.0011 20 6 9.5243 -7.3697 1.1998 21 6 8.9255 -6.1195 1.2019 22 8 8.6255 -5.4989 2.3745 23 6 8.6165 -6.3103 3.5527 24 8 9.8055 -7.1093 3.5664 25 6 9.8532 -8.0609 2.4990 26 1 -0.4849 0.8401 0.0004 27 1 3.8746 -0.6809 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6579 -3.1507 0.8896 31 1 5.9148 -2.1228 -0.8901 32 1 5.9149 -2.1230 0.8899 33 1 8.2621 -3.5905 -0.8896 34 1 8.2613 -3.5918 0.8904 35 1 8.6840 -5.6324 -2.1318 36 1 10.2978 -8.9597 -0.0007 37 1 7.7402 -6.9585 3.5438 38 1 8.5941 -5.6724 4.4361 39 1 9.1267 -8.8520 2.6842 40 1 10.8527 -8.4914 2.4391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078729208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:27 Heat of formation + Delta-G solvation = -150.830413 kcal Electronic energy + Delta-G solvation = -25050.214036 eV Core-core repulsion = 21064.271046 eV Total energy + Delta-G solvation = -3985.942990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14229 -41.34090 -38.32067 -36.80005 -35.50266 -34.57310 -33.46504 -32.09066 -31.10389 -28.22749 -27.58489 -26.98083 -26.18349 -23.36722 -22.12427 -21.50532 -20.19940 -18.96473 -17.95104 -17.70492 -17.26188 -16.72333 -16.55876 -16.07514 -15.72522 -15.54213 -15.35460 -14.98062 -14.80695 -14.60815 -14.45131 -14.12382 -13.99349 -13.53402 -13.37031 -13.18249 -12.73696 -12.48486 -12.26605 -12.14244 -12.05446 -11.78140 -11.52761 -11.16408 -11.13411 -10.85326 -10.64999 -10.57981 -9.97700 -9.81447 -9.70353 -9.22683 -9.06627 -8.55415 -8.48140 -8.00139 -6.05613 -4.03868 0.55806 0.74106 1.67563 2.70034 2.77942 3.07477 3.22567 3.28536 3.36390 3.39880 3.72196 3.87171 4.11311 4.12659 4.42255 4.43535 4.58812 4.73274 4.80986 4.83802 4.93335 5.02584 5.12164 5.21263 5.27455 5.35743 5.45909 5.58208 5.66317 5.69166 5.83792 6.04910 6.14277 6.33741 6.35766 6.48968 6.82233 6.92132 7.24146 7.37486 7.76945 8.52167 8.99476 9.56593 11.07888 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002605 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.601731 B =10745.883984 C =11560.442417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.440 4.440 12 S 1.237 4.763 13 O -0.834 6.834 14 C -0.412 4.412 15 C -0.055 4.055 16 C -0.115 4.115 17 C 0.074 3.926 18 F -0.137 7.137 19 C -0.114 4.114 20 C -0.176 4.176 21 C 0.134 3.866 22 O -0.317 6.317 23 C 0.223 3.777 24 O -0.386 6.386 25 C 0.103 3.897 26 H 0.263 0.737 27 H 0.014 0.986 28 H 0.015 0.985 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.069 0.931 38 H 0.144 0.856 39 H 0.077 0.923 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.919 -16.865 -1.437 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.578 4.578 12 S 1.436 4.564 13 O -0.829 6.829 14 C -0.545 4.545 15 C -0.057 4.057 16 C -0.135 4.135 17 C 0.054 3.946 18 F -0.115 7.115 19 C -0.133 4.133 20 C -0.177 4.177 21 C 0.088 3.912 22 O -0.232 6.232 23 C 0.111 3.889 24 O -0.306 6.306 25 C 0.027 3.973 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.122 0.878 35 H 0.171 0.829 36 H 0.159 0.841 37 H 0.087 0.913 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 23.362 -17.388 -1.251 29.149 hybrid contribution 0.998 1.889 1.513 2.618 sum 24.360 -15.499 0.262 28.874 Atomic orbital electron populations 1.69916 1.06291 1.26894 1.51094 1.25039 0.94739 0.99173 0.94568 0.86771 0.80329 0.83633 0.78507 1.20173 1.21388 1.19152 1.21167 0.89478 0.94583 1.50867 0.90898 1.19567 0.97070 0.91702 0.96346 1.21124 0.88202 1.01151 1.01899 1.27730 1.05951 1.16996 1.07132 1.70789 0.84072 0.88939 1.12550 1.93111 1.74580 1.64518 1.50707 1.26696 1.21502 0.97569 1.08699 1.18406 1.01201 0.96228 0.89912 1.20937 0.99810 0.94101 0.98639 1.17346 1.03008 0.92968 0.81258 1.91512 1.91470 1.82927 1.45633 1.20649 1.01800 1.00939 0.89959 1.20091 1.04516 0.96225 0.96852 1.18355 0.95312 0.91407 0.86172 1.86294 1.84470 1.38303 1.14159 1.24537 0.87481 0.89660 0.87229 1.88286 1.42684 1.50679 1.48915 1.21548 1.03767 0.90137 0.81895 0.92714 0.96799 0.96720 0.91553 0.92230 0.86837 0.89968 0.85322 0.87837 0.82885 0.84073 0.91280 0.83850 0.90472 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.19 4.04 -27.89 -0.11 -0.31 16 10 C -0.08 -1.64 5.16 -26.73 -0.14 -1.78 16 11 C -0.44 -6.37 5.92 37.16 0.22 -6.15 16 12 S 1.24 15.08 13.14 -107.50 -1.41 13.67 16 13 O -0.83 -15.14 18.14 -35.23 -0.64 -15.78 16 14 C -0.41 -4.18 5.82 36.01 0.21 -3.97 16 15 C -0.06 -0.60 5.15 -104.45 -0.54 -1.14 16 16 C -0.11 -1.01 9.67 -39.55 -0.38 -1.40 16 17 C 0.07 0.68 7.30 -39.44 -0.29 0.39 16 18 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 19 C -0.11 -0.97 9.69 -39.51 -0.38 -1.36 16 20 C -0.18 -1.75 5.82 -104.44 -0.61 -2.36 16 21 C 0.13 1.64 6.54 -39.24 -0.26 1.39 16 22 O -0.32 -4.25 9.48 -43.69 -0.41 -4.66 16 23 C 0.22 2.34 7.95 101.05 0.80 3.15 16 24 O -0.39 -3.96 10.97 -59.11 -0.65 -4.61 16 25 C 0.10 0.82 6.87 36.05 0.25 1.07 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 33 H 0.13 0.84 8.09 -51.92 -0.42 0.42 16 34 H 0.10 1.22 7.50 -51.92 -0.39 0.83 16 35 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -37.86 354.11 -8.68 -46.54 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -5.39 Total: -3.13 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -1.66 Total: -25.98 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.70 Total: -25.05 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -1.41 Total: 13.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.86 -8.68 -46.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078729208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.290 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds