Wall clock time and date at job start Tue Mar 31 2020 14:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42105 * 109.47364 * 296.39507 * 12 11 10 14 14 C 1.81401 * 103.00187 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.46970 * 179.97438 * 14 12 11 16 16 C 1.38139 * 119.98746 * 90.00333 * 15 14 12 17 17 C 1.38432 * 120.00732 * 180.02562 * 16 15 14 18 18 F 1.35100 * 119.98492 * 180.09461 * 17 16 15 19 19 C 1.38439 * 120.03029 * 0.07132 * 17 16 15 20 20 C 1.38221 * 120.09170 * 359.93913 * 19 17 16 21 21 C 1.38618 * 119.93967 * 359.69302 * 20 19 17 22 22 O 1.36021 * 120.52948 * 180.12093 * 21 20 19 23 23 C 1.43054 * 116.91244 * 343.78141 * 22 21 20 24 24 O 1.43261 * 108.60177 * 47.25873 * 23 22 21 25 25 C 1.43079 * 113.04266 * 294.54378 * 24 23 22 26 26 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47330 * 300.00431 * 14 12 11 34 34 H 1.09006 * 109.46769 * 60.00554 * 14 12 11 35 35 H 1.07999 * 119.99202 * 359.97438 * 16 15 14 36 36 H 1.08007 * 119.95679 * 179.97438 * 19 17 16 37 37 H 1.08999 * 109.61524 * 287.52916 * 23 22 21 38 38 H 1.08990 * 109.61915 * 166.99323 * 23 22 21 39 39 H 1.08999 * 109.49875 * 288.65110 * 25 24 23 40 40 H 1.08993 * 109.52603 * 168.56198 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 16 6.1561 -4.3469 -0.0010 13 8 5.7525 -4.9927 1.1987 14 6 7.9586 -4.1426 -0.0002 15 6 8.6177 -5.4978 -0.0002 16 6 8.9203 -6.1184 -1.1967 17 6 9.5253 -7.3635 -1.1972 18 9 9.8228 -7.9692 -2.3676 19 6 9.8261 -7.9881 0.0011 20 6 9.5243 -7.3697 1.1998 21 6 8.9255 -6.1195 1.2019 22 8 8.6255 -5.4989 2.3745 23 6 8.6165 -6.3103 3.5527 24 8 9.8055 -7.1093 3.5664 25 6 9.8532 -8.0609 2.4990 26 1 -0.4849 0.8401 0.0004 27 1 3.8746 -0.6809 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6579 -3.1507 0.8896 31 1 5.9148 -2.1228 -0.8901 32 1 5.9149 -2.1230 0.8899 33 1 8.2621 -3.5905 -0.8896 34 1 8.2613 -3.5918 0.8904 35 1 8.6840 -5.6324 -2.1318 36 1 10.2978 -8.9597 -0.0007 37 1 7.7402 -6.9585 3.5438 38 1 8.5941 -5.6724 4.4361 39 1 9.1267 -8.8520 2.6842 40 1 10.8527 -8.4914 2.4391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078729208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:26 Heat of formation + Delta-G solvation = -177.635156 kcal Electronic energy + Delta-G solvation = -25051.376377 eV Core-core repulsion = 21064.271046 eV Total energy + Delta-G solvation = -3987.105331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.83591 -42.08356 -39.03973 -37.57498 -36.74673 -36.32413 -34.20489 -34.12686 -31.80389 -29.93439 -28.46328 -27.66440 -26.92226 -25.10031 -22.97294 -22.26866 -21.83795 -19.73066 -19.02562 -18.68163 -18.46003 -18.14447 -17.31745 -16.83049 -16.53920 -16.46412 -16.31491 -16.19038 -16.03676 -15.61967 -15.36781 -15.33578 -14.88760 -14.79334 -14.42807 -14.17393 -14.09120 -13.88971 -13.40265 -13.18215 -13.00810 -12.92417 -12.72222 -12.57846 -12.37268 -12.06995 -11.87654 -11.81509 -11.53422 -11.36640 -11.35155 -11.02133 -10.76868 -9.91477 -9.35216 -8.98595 -8.30158 -6.34917 -0.16730 -0.00313 0.73244 1.34875 1.38128 1.49648 1.75590 2.01903 2.35849 2.36108 2.51827 2.85696 3.05012 3.09347 3.39664 3.43865 3.68458 3.98327 4.00542 4.05249 4.14988 4.15834 4.19968 4.27471 4.39866 4.45407 4.56895 4.58356 4.81435 4.89831 4.94740 5.00953 5.02903 5.09522 5.11206 5.44801 5.46647 5.54789 5.65622 5.67067 6.14659 6.27356 6.73451 7.29795 8.86940 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002605 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.601731 B =10745.883984 C =11560.442417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.440 4.440 12 S 1.286 4.714 13 O -0.900 6.900 14 C -0.398 4.398 15 C -0.077 4.077 16 C -0.106 4.106 17 C 0.065 3.935 18 F -0.137 7.137 19 C -0.108 4.108 20 C -0.185 4.185 21 C 0.099 3.901 22 O -0.343 6.343 23 C 0.218 3.782 24 O -0.397 6.397 25 C 0.096 3.904 26 H 0.267 0.733 27 H 0.008 0.992 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.155 0.845 32 H 0.070 0.930 33 H 0.175 0.825 34 H 0.087 0.913 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.067 0.933 38 H 0.158 0.842 39 H 0.092 0.908 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.086 -16.558 -3.243 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.180 1.180 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.577 4.577 12 S 1.488 4.512 13 O -0.896 6.896 14 C -0.534 4.534 15 C -0.079 4.079 16 C -0.126 4.126 17 C 0.045 3.955 18 F -0.116 7.116 19 C -0.127 4.127 20 C -0.186 4.186 21 C 0.053 3.947 22 O -0.260 6.260 23 C 0.105 3.895 24 O -0.316 6.316 25 C 0.020 3.980 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.173 0.827 32 H 0.089 0.911 33 H 0.193 0.807 34 H 0.106 0.894 35 H 0.205 0.795 36 H 0.186 0.814 37 H 0.085 0.915 38 H 0.175 0.825 39 H 0.110 0.890 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 26.508 -17.095 -3.059 31.690 hybrid contribution 0.062 1.628 2.046 2.615 sum 26.570 -15.467 -1.013 30.761 Atomic orbital electron populations 1.70083 1.08417 1.28230 1.52633 1.26098 0.95677 1.03782 0.94031 0.85589 0.79156 0.77795 0.79677 1.18011 1.21300 1.17443 1.21578 0.92425 0.93154 1.50543 0.95180 1.19551 0.93583 0.94739 0.96821 1.20982 0.92005 0.98237 1.01194 1.27703 1.02159 1.19276 1.08611 1.69995 0.84964 0.86116 1.10099 1.93008 1.77413 1.66258 1.52912 1.26573 1.18530 0.98033 1.10231 1.18584 1.02347 0.96674 0.90274 1.21273 0.98330 0.93826 0.99175 1.17519 1.03199 0.93322 0.81414 1.91517 1.91488 1.82944 1.45628 1.20954 1.00731 1.01764 0.89232 1.20348 1.04289 0.95773 0.98176 1.18862 0.96745 0.92769 0.86325 1.86250 1.84976 1.39575 1.15153 1.24688 0.87603 0.89991 0.87174 1.88259 1.42489 1.51134 1.49746 1.21858 1.05712 0.89801 0.80598 0.92467 0.97396 0.94439 0.90023 0.95487 0.82703 0.91120 0.80729 0.89433 0.79528 0.81380 0.91540 0.82502 0.89002 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.00 0.04 5.47 84.66 0.46 0.50 16 3 Si 0.96 44.34 27.47 68.60 1.88 46.22 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.54 -31.75 9.66 25.60 0.25 -31.50 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.30 5.16 30.60 0.16 -3.14 16 11 C -0.44 -11.89 5.92 71.98 0.43 -11.46 16 12 S 1.29 29.72 13.14 -56.49 -0.74 28.97 16 13 O -0.90 -33.45 18.14 -148.98 -2.70 -36.15 16 14 C -0.40 -7.09 5.82 71.24 0.41 -6.68 16 15 C -0.08 -1.52 5.15 -19.76 -0.10 -1.62 16 16 C -0.11 -1.54 9.67 22.29 0.22 -1.33 16 17 C 0.06 1.01 7.30 22.36 0.16 1.18 16 18 F -0.14 -2.18 17.27 44.97 0.78 -1.40 16 19 C -0.11 -1.57 9.69 22.31 0.22 -1.36 16 20 C -0.18 -3.43 5.82 -19.75 -0.11 -3.54 16 21 C 0.10 2.36 6.54 22.49 0.15 2.51 16 22 O -0.34 -9.35 9.48 -70.96 -0.67 -10.03 16 23 C 0.22 4.68 7.95 113.37 0.90 5.59 16 24 O -0.40 -7.96 10.97 -126.14 -1.38 -9.34 16 25 C 0.10 1.40 6.87 71.26 0.49 1.88 16 26 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 28 H 0.04 1.59 7.57 -2.38 -0.02 1.57 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.16 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.18 1.43 8.09 -2.39 -0.02 1.41 16 34 H 0.09 1.94 7.50 -2.39 -0.02 1.92 16 35 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 37 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 38 H 0.16 2.69 8.14 -2.39 -0.02 2.68 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -86.63 354.11 2.20 -84.43 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.00 Total: 6.97 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 3.75 Total: -49.25 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -4.76 Total: -55.52 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.78 Total: -1.40 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.88 Total: 46.22 kcal Atomic # 16 Polarization: 29.72 SS G_CDS: -0.74 Total: 28.97 kcal Total: -86.63 2.20 -84.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078729208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.203 kcal (2) G-P(sol) polarization free energy of solvation -86.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds