Wall clock time and date at job start Tue Mar 31 2020 14:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42109 * 109.47180 * 63.61320 * 12 11 10 14 14 C 1.81401 * 103.00187 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.46970 * 179.97438 * 14 12 11 16 16 C 1.38139 * 119.98746 * 90.00333 * 15 14 12 17 17 C 1.38433 * 120.00031 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.97693 * 180.02562 * 17 16 15 19 19 C 1.38441 * 120.03992 * 0.05143 * 17 16 15 20 20 C 1.38216 * 120.08679 * 0.02562 * 19 17 16 21 21 C 1.38626 * 119.93634 * 359.60820 * 20 19 17 22 22 O 1.36030 * 120.52715 * 180.62910 * 21 20 19 23 23 C 1.43043 * 116.83948 * 343.41896 * 22 21 20 24 24 O 1.43262 * 108.60244 * 47.54993 * 23 22 21 25 25 C 1.43368 * 112.76357 * 294.22655 * 24 23 22 26 26 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47330 * 300.00431 * 14 12 11 34 34 H 1.09006 * 109.46769 * 60.00554 * 14 12 11 35 35 H 1.07998 * 119.99604 * 359.95436 * 16 15 14 36 36 H 1.07999 * 119.95309 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.61667 * 167.28825 * 23 22 21 38 38 H 1.09007 * 109.61336 * 287.64193 * 23 22 21 39 39 H 1.08999 * 110.06374 * 288.83618 * 25 24 23 40 40 H 1.09000 * 109.03247 * 168.68676 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 16 6.1561 -4.3469 -0.0010 13 8 5.7526 -4.9914 -1.2016 14 6 7.9586 -4.1426 -0.0002 15 6 8.6177 -5.4978 -0.0002 16 6 8.9203 -6.1184 -1.1967 17 6 9.5263 -7.3630 -1.1970 18 9 9.8225 -7.9693 -2.3675 19 6 9.8285 -7.9870 0.0013 20 6 9.5254 -7.3692 1.1999 21 6 8.9255 -6.1195 1.2018 22 8 8.6336 -5.4949 2.3745 23 6 8.6265 -6.3050 3.5534 24 8 9.8154 -7.1043 3.5658 25 6 9.8514 -8.0615 2.4991 26 1 -0.4849 0.8401 0.0004 27 1 3.8746 -0.6809 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6579 -3.1507 0.8896 31 1 5.9148 -2.1228 -0.8901 32 1 5.9149 -2.1230 0.8899 33 1 8.2621 -3.5905 -0.8896 34 1 8.2613 -3.5918 0.8904 35 1 8.6838 -5.6326 -2.1318 36 1 10.3016 -8.9579 -0.0006 37 1 8.6058 -5.6661 4.4363 38 1 7.7483 -6.9508 3.5483 39 1 9.1245 -8.8529 2.6820 40 1 10.8513 -8.4917 2.4412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078729212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:31 Heat of formation + Delta-G solvation = -150.942477 kcal Electronic energy + Delta-G solvation = -24952.021575 eV Core-core repulsion = 20966.073725 eV Total energy + Delta-G solvation = -3985.947849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.13383 -41.40625 -38.35569 -36.87037 -35.55722 -34.58014 -33.48668 -32.09320 -31.14506 -28.24231 -27.61845 -27.00698 -26.24283 -23.37702 -22.14042 -21.57548 -20.20255 -19.01412 -17.94779 -17.73894 -17.32159 -16.73388 -16.60268 -16.11179 -15.76289 -15.58635 -15.36501 -14.99189 -14.83540 -14.66704 -14.48471 -14.14869 -14.04679 -13.53433 -13.40432 -13.17692 -12.74650 -12.52437 -12.37720 -12.14265 -12.02246 -11.78149 -11.58374 -11.22280 -11.13587 -10.84825 -10.71273 -10.61677 -10.00091 -9.80304 -9.71540 -9.23025 -9.09642 -8.55420 -8.50842 -8.02142 -6.05584 -4.03880 0.53971 0.70881 1.63522 2.64467 2.71714 3.02501 3.17950 3.29199 3.36454 3.39182 3.70454 3.83689 4.03544 4.13949 4.31457 4.43510 4.59018 4.67298 4.75784 4.77208 4.93418 4.97389 5.08421 5.19342 5.27197 5.33934 5.45388 5.57463 5.64840 5.67914 5.81975 6.04116 6.08558 6.29809 6.34921 6.48389 6.81930 6.82229 7.23603 7.37220 7.76775 8.52154 8.99471 9.56560 11.07901 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.002607 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.990638 B =10738.993817 C =11623.620874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.085 4.085 11 C -0.438 4.438 12 S 1.235 4.765 13 O -0.840 6.840 14 C -0.409 4.409 15 C -0.052 4.052 16 C -0.110 4.110 17 C 0.077 3.923 18 F -0.137 7.137 19 C -0.114 4.114 20 C -0.173 4.173 21 C 0.130 3.870 22 O -0.319 6.319 23 C 0.217 3.783 24 O -0.384 6.384 25 C 0.103 3.897 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.009 0.991 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.978 -16.912 8.427 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.124 4.124 11 C -0.577 4.577 12 S 1.435 4.565 13 O -0.835 6.835 14 C -0.542 4.542 15 C -0.054 4.054 16 C -0.130 4.130 17 C 0.058 3.942 18 F -0.116 7.116 19 C -0.133 4.133 20 C -0.175 4.175 21 C 0.084 3.916 22 O -0.235 6.235 23 C 0.104 3.896 24 O -0.303 6.303 25 C 0.027 3.973 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.116 0.884 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 23.426 -17.438 8.546 30.428 hybrid contribution 1.016 1.891 -2.304 3.149 sum 24.442 -15.547 6.242 29.632 Atomic orbital electron populations 1.69916 1.06290 1.26895 1.51083 1.25037 0.94740 0.99169 0.94563 0.86773 0.80352 0.83635 0.78485 1.20410 1.21318 1.18973 1.21165 0.89463 0.94594 1.50884 0.90886 1.19569 0.97087 0.91658 0.96367 1.21132 0.88137 1.01198 1.01946 1.27720 1.06010 1.16761 1.07196 1.70883 0.84129 0.89113 1.12380 1.93117 1.74706 1.64718 1.50952 1.26679 1.21181 0.97614 1.08754 1.18351 1.01129 0.96115 0.89836 1.20984 0.98834 0.94292 0.98931 1.17387 1.02624 0.92777 0.81416 1.91513 1.91431 1.82832 1.45794 1.20651 1.01837 1.00973 0.89887 1.20065 1.04397 0.96297 0.96716 1.18171 0.96376 0.91343 0.85745 1.86281 1.85048 1.38220 1.13902 1.24622 0.87800 0.89829 0.87302 1.88393 1.42335 1.50282 1.49271 1.21602 1.03947 0.90028 0.81746 0.92710 0.96253 0.97220 0.92239 0.91476 0.89998 0.86673 0.88388 0.84728 0.83933 0.83979 0.83469 0.91178 0.90164 0.86639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.19 4.04 -27.89 -0.11 -0.31 16 10 C -0.09 -1.66 5.16 -26.73 -0.14 -1.80 16 11 C -0.44 -6.43 5.92 37.16 0.22 -6.21 16 12 S 1.23 15.55 13.14 -107.50 -1.41 14.14 16 13 O -0.84 -15.66 18.14 -35.23 -0.64 -16.30 16 14 C -0.41 -4.26 5.83 36.01 0.21 -4.05 16 15 C -0.05 -0.58 5.15 -104.46 -0.54 -1.12 16 16 C -0.11 -1.30 9.68 -39.55 -0.38 -1.68 16 17 C 0.08 0.84 7.30 -39.43 -0.29 0.55 16 18 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 19 C -0.11 -0.97 9.69 -39.51 -0.38 -1.35 16 20 C -0.17 -1.46 5.82 -104.45 -0.61 -2.06 16 21 C 0.13 1.28 6.53 -39.24 -0.26 1.02 16 22 O -0.32 -2.68 9.48 -43.72 -0.41 -3.10 16 23 C 0.22 1.22 7.93 101.05 0.80 2.03 16 24 O -0.38 -2.77 10.99 -59.11 -0.65 -3.42 16 25 C 0.10 0.60 6.87 36.04 0.25 0.84 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 32 H 0.11 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.10 1.03 8.09 -51.92 -0.42 0.61 16 34 H 0.13 1.11 7.49 -51.92 -0.39 0.72 16 35 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.15 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.27 8.12 -51.92 -0.42 -0.15 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -37.68 354.12 -8.68 -46.36 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -5.39 Total: -3.66 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -1.66 Total: -27.65 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.22 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.70 Total: -22.82 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Atomic # 16 Polarization: 15.55 SS G_CDS: -1.41 Total: 14.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.68 -8.68 -46.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078729212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.583 kcal (2) G-P(sol) polarization free energy of solvation -37.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds