Wall clock time and date at job start Tue Mar 31 2020 14:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42109 * 109.47180 * 63.61320 * 12 11 10 14 14 C 1.81401 * 103.00187 * 180.02562 * 12 11 10 15 15 C 1.50699 * 109.46970 * 179.97438 * 14 12 11 16 16 C 1.38139 * 119.98746 * 90.00333 * 15 14 12 17 17 C 1.38433 * 120.00031 * 179.97438 * 16 15 14 18 18 F 1.35103 * 119.97693 * 180.02562 * 17 16 15 19 19 C 1.38441 * 120.03992 * 0.05143 * 17 16 15 20 20 C 1.38216 * 120.08679 * 0.02562 * 19 17 16 21 21 C 1.38626 * 119.93634 * 359.60820 * 20 19 17 22 22 O 1.36030 * 120.52715 * 180.62910 * 21 20 19 23 23 C 1.43043 * 116.83948 * 343.41896 * 22 21 20 24 24 O 1.43262 * 108.60244 * 47.54993 * 23 22 21 25 25 C 1.43368 * 112.76357 * 294.22655 * 24 23 22 26 26 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 28 28 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 29 29 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 30 30 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 31 31 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 32 32 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 33 33 H 1.08998 * 109.47330 * 300.00431 * 14 12 11 34 34 H 1.09006 * 109.46769 * 60.00554 * 14 12 11 35 35 H 1.07998 * 119.99604 * 359.95436 * 16 15 14 36 36 H 1.07999 * 119.95309 * 180.02562 * 19 17 16 37 37 H 1.09002 * 109.61667 * 167.28825 * 23 22 21 38 38 H 1.09007 * 109.61336 * 287.64193 * 23 22 21 39 39 H 1.08999 * 110.06374 * 288.83618 * 25 24 23 40 40 H 1.09000 * 109.03247 * 168.68676 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 16 6.1561 -4.3469 -0.0010 13 8 5.7526 -4.9914 -1.2016 14 6 7.9586 -4.1426 -0.0002 15 6 8.6177 -5.4978 -0.0002 16 6 8.9203 -6.1184 -1.1967 17 6 9.5263 -7.3630 -1.1970 18 9 9.8225 -7.9693 -2.3675 19 6 9.8285 -7.9870 0.0013 20 6 9.5254 -7.3692 1.1999 21 6 8.9255 -6.1195 1.2018 22 8 8.6336 -5.4949 2.3745 23 6 8.6265 -6.3050 3.5534 24 8 9.8154 -7.1043 3.5658 25 6 9.8514 -8.0615 2.4991 26 1 -0.4849 0.8401 0.0004 27 1 3.8746 -0.6809 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1503 -0.8903 30 1 3.6579 -3.1507 0.8896 31 1 5.9148 -2.1228 -0.8901 32 1 5.9149 -2.1230 0.8899 33 1 8.2621 -3.5905 -0.8896 34 1 8.2613 -3.5918 0.8904 35 1 8.6838 -5.6326 -2.1318 36 1 10.3016 -8.9579 -0.0006 37 1 8.6058 -5.6661 4.4363 38 1 7.7483 -6.9508 3.5483 39 1 9.1245 -8.8529 2.6820 40 1 10.8513 -8.4917 2.4412 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078729212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:30 Heat of formation + Delta-G solvation = -177.498017 kcal Electronic energy + Delta-G solvation = -24953.173109 eV Core-core repulsion = 20966.073725 eV Total energy + Delta-G solvation = -3987.099384 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97180 -41.99930 -38.98479 -37.41152 -36.84707 -36.34047 -34.20823 -34.13369 -31.81678 -29.95234 -28.48556 -27.53562 -26.77125 -25.11867 -22.99237 -22.28005 -21.84404 -19.60199 -19.02285 -18.60248 -18.48683 -18.18687 -17.29377 -16.87327 -16.58294 -16.47332 -16.27623 -16.16567 -16.04571 -15.64020 -15.32422 -15.15543 -15.04178 -14.79960 -14.32255 -14.26017 -14.10737 -13.88921 -13.43467 -13.18962 -13.07396 -12.89381 -12.74440 -12.54527 -12.34786 -12.11557 -11.79884 -11.76649 -11.55158 -11.35749 -11.20894 -11.05448 -10.77735 -9.98518 -9.35454 -9.02010 -8.30102 -6.34939 -0.23934 -0.03845 0.65418 1.35811 1.37181 1.49746 1.69580 2.07487 2.35614 2.35815 2.71401 2.78736 3.04151 3.05132 3.33563 3.45140 3.83888 3.88876 4.01917 4.09321 4.14658 4.18665 4.24316 4.40944 4.44192 4.55943 4.57620 4.60258 4.79117 4.86345 4.92791 5.00110 5.01434 5.06900 5.07808 5.45230 5.47556 5.54142 5.65199 5.72214 6.22862 6.27247 6.73348 7.29683 8.86949 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.002607 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.990638 B =10738.993817 C =11623.620874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.236 1.236 7 C -0.539 4.539 8 H 0.030 0.970 9 C -0.008 4.008 10 C -0.086 4.086 11 C -0.438 4.438 12 S 1.280 4.720 13 O -0.907 6.907 14 C -0.395 4.395 15 C -0.074 4.074 16 C -0.132 4.132 17 C 0.054 3.946 18 F -0.147 7.147 19 C -0.102 4.102 20 C -0.172 4.172 21 C 0.129 3.871 22 O -0.324 6.324 23 C 0.204 3.796 24 O -0.397 6.397 25 C 0.100 3.900 26 H 0.267 0.733 27 H 0.040 0.960 28 H 0.008 0.992 29 H 0.027 0.973 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.155 0.845 33 H 0.096 0.904 34 H 0.165 0.835 35 H 0.127 0.873 36 H 0.173 0.827 37 H 0.174 0.826 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.006 -16.733 10.950 33.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.159 1.159 7 C -0.577 4.577 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.125 4.125 11 C -0.576 4.576 12 S 1.483 4.517 13 O -0.903 6.903 14 C -0.531 4.531 15 C -0.076 4.076 16 C -0.152 4.152 17 C 0.035 3.965 18 F -0.126 7.126 19 C -0.121 4.121 20 C -0.174 4.174 21 C 0.082 3.918 22 O -0.240 6.240 23 C 0.093 3.907 24 O -0.317 6.317 25 C 0.025 3.975 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.173 0.827 33 H 0.115 0.885 34 H 0.183 0.817 35 H 0.145 0.855 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 26.433 -17.269 11.078 33.461 hybrid contribution 0.111 1.703 -3.014 3.463 sum 26.544 -15.567 8.064 31.811 Atomic orbital electron populations 1.70081 1.08427 1.28235 1.52611 1.26095 0.95680 1.03773 0.94030 0.85613 0.79950 0.77888 0.78919 1.20057 1.20686 1.15869 1.21573 0.92409 0.93163 1.50552 0.95170 1.19554 0.93598 0.94606 0.96931 1.20995 0.91824 0.98399 1.01265 1.27675 1.02321 1.18756 1.08821 1.70100 0.85063 0.86603 1.09951 1.93012 1.77513 1.66583 1.53181 1.26515 1.18229 0.98137 1.10219 1.18389 1.02422 0.96515 0.90267 1.21028 1.00091 0.95172 0.98935 1.17633 1.03843 0.93006 0.82026 1.91480 1.91650 1.82939 1.46548 1.20969 1.00490 1.01780 0.88859 1.20462 1.03137 0.95808 0.97946 1.18271 0.95893 0.91718 0.85895 1.86267 1.84754 1.38979 1.14004 1.25149 0.88092 0.90570 0.86925 1.88384 1.43108 1.50692 1.49471 1.21860 1.05817 0.89926 0.79909 0.92465 0.94220 0.97383 0.95441 0.89972 0.90690 0.82718 0.88545 0.81712 0.85453 0.80990 0.80934 0.89239 0.87803 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 2 C 0.00 0.04 5.47 84.66 0.46 0.51 16 3 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.24 -9.76 6.54 99.48 0.65 -9.10 16 7 C -0.54 -31.72 9.66 25.60 0.25 -31.47 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.09 -3.34 5.16 30.60 0.16 -3.19 16 11 C -0.44 -12.04 5.92 71.98 0.43 -11.61 16 12 S 1.28 31.16 13.14 -56.49 -0.74 30.42 16 13 O -0.91 -34.90 18.14 -148.98 -2.70 -37.60 16 14 C -0.40 -7.55 5.83 71.24 0.41 -7.14 16 15 C -0.07 -1.56 5.15 -19.76 -0.10 -1.66 16 16 C -0.13 -3.17 9.68 22.29 0.22 -2.95 16 17 C 0.05 1.17 7.30 22.36 0.16 1.33 16 18 F -0.15 -3.49 17.27 44.97 0.78 -2.71 16 19 C -0.10 -1.52 9.69 22.31 0.22 -1.31 16 20 C -0.17 -2.43 5.82 -19.75 -0.11 -2.54 16 21 C 0.13 2.25 6.53 22.49 0.15 2.39 16 22 O -0.32 -4.42 9.48 -71.05 -0.67 -5.10 16 23 C 0.20 1.56 7.93 113.37 0.90 2.46 16 24 O -0.40 -4.30 10.99 -126.14 -1.39 -5.69 16 25 C 0.10 0.79 6.87 71.26 0.49 1.28 16 26 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.04 1.70 7.20 -2.39 -0.02 1.68 16 28 H 0.01 0.37 7.57 -2.38 -0.02 0.35 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.15 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 34 H 0.17 2.14 7.49 -2.39 -0.02 2.12 16 35 H 0.13 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.09 0.35 8.12 -2.38 -0.02 0.33 16 39 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.14 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -85.93 354.12 2.20 -83.74 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.00 Total: 5.41 kcal Atomic # 6 Polarization: -57.91 SS G_CDS: 3.74 Total: -54.17 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -4.76 Total: -48.39 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Atomic # 16 Polarization: 31.16 SS G_CDS: -0.74 Total: 30.42 kcal Total: -85.93 2.20 -83.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078729212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.761 kcal (2) G-P(sol) polarization free energy of solvation -85.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds