Wall clock time and date at job start Tue Mar 31 2020 16:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46829 * 2 1 4 4 N 1.46499 * 109.46607 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99987 * 281.53111 * 4 3 2 6 6 H 1.07999 * 119.99879 * 177.37276 * 5 4 3 7 7 C 1.38810 * 120.00263 * 357.37596 * 5 4 3 8 8 N 1.31621 * 119.99393 * 7.48424 * 7 5 4 9 9 Si 1.86797 * 120.00246 * 187.48559 * 7 5 4 10 10 H 1.48492 * 109.47059 * 89.99750 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99917 * 9 7 5 12 12 H 1.48507 * 109.46900 * 329.99849 * 9 7 5 13 13 S 1.65599 * 120.00215 * 101.53668 * 4 3 2 14 14 O 1.42099 * 106.40429 * 198.81027 * 13 4 3 15 15 O 1.42107 * 106.39889 * 331.72858 * 13 4 3 16 16 C 1.76205 * 107.21831 * 85.26566 * 13 4 3 17 17 C 1.38259 * 119.99955 * 347.34415 * 16 13 4 18 18 C 1.38212 * 119.99627 * 179.78726 * 17 16 13 19 19 C 1.38255 * 120.00505 * 0.43648 * 18 17 16 20 20 C 1.50696 * 120.00335 * 179.83835 * 19 18 17 21 21 C 1.38220 * 119.99392 * 359.81865 * 19 18 17 22 22 C 1.38211 * 119.99912 * 167.61077 * 16 13 4 23 23 N 1.48021 * 120.00191 * 359.97438 * 22 16 13 24 24 O 1.21800 * 120.00109 * 187.43003 * 23 22 16 25 25 O 1.21801 * 119.99875 * 7.42907 * 23 22 16 26 26 H 1.09005 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47561 * 299.99987 * 1 2 3 28 28 H 1.09005 * 109.47085 * 60.00066 * 1 2 3 29 29 H 1.08995 * 109.47072 * 240.00217 * 2 1 3 30 30 H 1.08998 * 109.46719 * 119.99955 * 2 1 3 31 31 H 1.08995 * 109.47116 * 60.00244 * 3 2 1 32 32 H 1.08992 * 109.47064 * 299.99697 * 3 2 1 33 33 H 0.97004 * 119.99697 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.00069 * 359.97438 * 17 16 13 35 35 H 1.08007 * 119.99617 * 180.27990 * 18 17 16 36 36 H 1.09008 * 109.46719 * 269.97722 * 20 19 18 37 37 H 1.08994 * 109.47372 * 29.97402 * 20 19 18 38 38 H 1.08998 * 109.47205 * 149.98250 * 20 19 18 39 39 H 1.07999 * 119.99583 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.2056 1.1630 6 1 5.2683 1.1634 1.1553 7 6 3.4957 1.0195 2.3510 8 7 2.1831 0.9236 2.3386 9 14 4.4255 0.9053 3.9671 10 1 4.5690 2.2623 4.5526 11 1 3.6754 0.0364 4.9093 12 1 5.7712 0.3261 3.7241 13 16 4.3336 1.7291 -1.4042 14 8 5.6516 1.2389 -1.1998 15 8 3.4949 1.2858 -2.4623 16 6 4.4743 3.4767 -1.5796 17 6 3.7200 4.3147 -0.7794 18 6 3.8336 5.6855 -0.9139 19 6 4.6948 6.2188 -1.8549 20 6 4.8159 7.7135 -2.0041 21 6 5.4449 5.3810 -2.6585 22 6 5.3345 4.0097 -2.5209 23 7 6.1381 3.1126 -3.3813 24 8 6.9930 3.5765 -4.1144 25 8 5.9445 1.9103 -3.3561 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6985 0.7932 3.1687 34 1 3.0442 3.8981 -0.0470 35 1 3.2477 6.3402 -0.2857 36 1 4.0896 8.0655 -2.7368 37 1 4.6237 8.1913 -1.0435 38 1 5.8219 7.9647 -2.3402 39 1 6.1180 5.7975 -3.3932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:44 Heat of formation + Delta-G solvation = -27.315222 kcal Electronic energy + Delta-G solvation = -27461.850270 eV Core-core repulsion = 23501.183263 eV Total energy + Delta-G solvation = -3960.667008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.99674 -39.40703 -36.73322 -36.36432 -35.88462 -34.48594 -33.31689 -32.14250 -31.91381 -31.20815 -27.54168 -26.43793 -26.06807 -23.75065 -22.73167 -21.85798 -20.51710 -19.25685 -18.64888 -18.33017 -17.48945 -17.30917 -16.77488 -16.51278 -15.49469 -14.72309 -14.63847 -14.43176 -14.39487 -14.10790 -13.72845 -13.48920 -12.69263 -12.67793 -12.56958 -12.46767 -12.15907 -11.84529 -11.78101 -11.39261 -11.14273 -11.13523 -11.08499 -10.91984 -10.84622 -10.73987 -10.57653 -10.40099 -10.30822 -10.15395 -10.04308 -9.78123 -9.50828 -9.23863 -9.06382 -8.22421 -6.41461 -4.02448 -0.07570 0.81152 1.33080 1.51920 1.60331 3.06133 3.12986 3.18555 3.21336 3.87322 4.18665 4.38294 4.45508 4.64942 4.71427 4.79817 5.01983 5.13979 5.21250 5.26362 5.47358 5.56755 5.71630 5.76369 5.91417 6.03472 6.03947 6.10747 6.25900 6.32430 6.36245 6.64098 6.75084 6.91733 6.95550 7.11912 7.20005 7.61337 7.78255 7.83850 8.29704 8.59857 9.01628 10.36602 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.005414 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.151772 B = 5170.556793 C = 5566.176043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.128 3.872 4 N -0.817 5.817 5 C -0.263 4.263 6 H 0.118 0.882 7 C 0.034 3.966 8 N -0.840 5.840 9 Si 0.922 3.078 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.266 1.266 13 S 2.572 3.428 14 O -0.958 6.958 15 O -0.967 6.967 16 C -0.608 4.608 17 C -0.028 4.028 18 C -0.090 4.090 19 C -0.063 4.063 20 C -0.115 4.115 21 C -0.077 4.077 22 C 0.034 3.966 23 N 0.018 4.982 24 O -0.153 6.153 25 O -0.140 6.140 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.029 0.971 33 H 0.270 0.730 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 11.325 -1.112 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.003 3.997 4 N -0.647 5.647 5 C -0.404 4.404 6 H 0.135 0.865 7 C -0.174 4.174 8 N -0.483 5.483 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.190 1.190 13 S 2.659 3.341 14 O -0.946 6.946 15 O -0.956 6.956 16 C -0.680 4.680 17 C -0.047 4.047 18 C -0.109 4.109 19 C -0.064 4.064 20 C -0.172 4.172 21 C -0.097 4.097 22 C -0.049 4.049 23 N 0.537 4.463 24 O -0.370 6.370 25 O -0.355 6.355 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.936 11.323 -1.426 11.576 hybrid contribution 0.550 0.524 0.686 1.024 sum -1.386 11.847 -0.739 11.950 Atomic orbital electron populations 1.21590 0.97402 0.99909 1.00497 1.21725 0.93676 0.97745 1.01802 1.21675 0.78688 0.98519 1.00827 1.54394 1.13871 1.70252 1.26187 1.19936 0.93495 1.41657 0.85360 0.86459 1.25408 0.95820 0.96881 0.99277 1.70203 1.06065 1.44817 1.27254 0.85970 0.79919 0.78498 0.80835 1.20154 1.20475 1.19027 1.09479 0.74154 0.76073 0.74413 1.93427 1.37732 1.77794 1.85693 1.93446 1.68293 1.79322 1.54498 1.32836 0.99768 1.36230 0.99142 1.21098 0.95325 0.92690 0.95556 1.21627 0.96757 0.95755 0.96746 1.20020 0.95143 0.96597 0.94674 1.20867 1.03350 0.89527 1.03418 1.20917 0.99132 0.90059 0.99557 1.20498 0.97939 0.90266 0.96212 1.43810 1.00411 1.01814 1.00262 1.94443 1.26479 1.79788 1.36321 1.94594 1.72711 0.97094 1.71097 0.94249 0.92624 0.94485 0.94865 0.88657 0.86255 0.95256 0.91811 0.82390 0.83802 0.90219 0.90483 0.90730 0.83053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.91 37.16 0.37 -2.01 16 2 C -0.11 -2.33 5.46 -26.73 -0.15 -2.47 16 3 C 0.13 2.73 3.86 -4.04 -0.02 2.71 16 4 N -0.82 -18.88 2.12 -59.91 -0.13 -19.01 16 5 C -0.26 -6.24 9.50 -15.06 -0.14 -6.38 16 6 H 0.12 2.87 7.05 -52.49 -0.37 2.50 16 7 C 0.03 0.76 5.22 -17.43 -0.09 0.67 16 8 N -0.84 -18.27 7.36 55.49 0.41 -17.86 16 9 Si 0.92 17.89 29.56 -169.99 -5.02 12.86 16 10 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 13 S 2.57 62.30 3.87 -107.50 -0.42 61.88 16 14 O -0.96 -25.78 14.38 -67.06 -0.96 -26.74 16 15 O -0.97 -25.14 16.41 -64.82 -1.06 -26.21 16 16 C -0.61 -12.48 5.83 -39.58 -0.23 -12.71 16 17 C -0.03 -0.46 9.57 -39.58 -0.38 -0.84 16 18 C -0.09 -1.16 9.70 -39.58 -0.38 -1.54 16 19 C -0.06 -0.78 5.88 -104.62 -0.62 -1.39 16 20 C -0.12 -0.89 10.01 36.00 0.36 -0.53 16 21 C -0.08 -1.16 9.21 -39.58 -0.36 -1.52 16 22 C 0.03 0.67 6.81 -79.95 -0.54 0.12 16 23 N 0.02 0.39 4.45 33.96 0.15 0.54 16 24 O -0.15 -3.07 18.47 -29.46 -0.54 -3.61 16 25 O -0.14 -3.48 13.78 -39.46 -0.54 -4.03 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.17 6.09 -51.93 -0.32 1.86 16 31 H 0.12 2.51 5.69 -51.93 -0.30 2.22 16 32 H 0.03 0.59 7.52 -51.93 -0.39 0.20 16 33 H 0.27 5.57 8.31 -40.82 -0.34 5.23 16 34 H 0.16 2.54 6.54 -52.48 -0.34 2.19 16 35 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.15 1.88 7.63 -52.49 -0.40 1.48 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -29.91 336.45 -9.87 -39.78 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.63 Total: 3.22 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -2.18 Total: -25.90 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.43 Total: -36.33 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -3.12 Total: -60.59 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.02 Total: 12.86 kcal Atomic # 16 Polarization: 62.30 SS G_CDS: -0.42 Total: 61.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.91 -9.87 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.464 kcal (2) G-P(sol) polarization free energy of solvation -29.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds