Wall clock time and date at job start Tue Mar 31 2020 16:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46829 * 2 1 4 4 N 1.46499 * 109.46607 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99987 * 281.53111 * 4 3 2 6 6 H 1.07999 * 119.99879 * 177.37276 * 5 4 3 7 7 C 1.38810 * 120.00263 * 357.37596 * 5 4 3 8 8 N 1.31621 * 119.99393 * 7.48424 * 7 5 4 9 9 Si 1.86797 * 120.00246 * 187.48559 * 7 5 4 10 10 H 1.48492 * 109.47059 * 89.99750 * 9 7 5 11 11 H 1.48500 * 109.47106 * 209.99917 * 9 7 5 12 12 H 1.48507 * 109.46900 * 329.99849 * 9 7 5 13 13 S 1.65599 * 120.00215 * 101.53668 * 4 3 2 14 14 O 1.42099 * 106.40429 * 198.81027 * 13 4 3 15 15 O 1.42107 * 106.39889 * 331.72858 * 13 4 3 16 16 C 1.76205 * 107.21831 * 85.26566 * 13 4 3 17 17 C 1.38259 * 119.99955 * 347.34415 * 16 13 4 18 18 C 1.38212 * 119.99627 * 179.78726 * 17 16 13 19 19 C 1.38255 * 120.00505 * 0.43648 * 18 17 16 20 20 C 1.50696 * 120.00335 * 179.83835 * 19 18 17 21 21 C 1.38220 * 119.99392 * 359.81865 * 19 18 17 22 22 C 1.38211 * 119.99912 * 167.61077 * 16 13 4 23 23 N 1.48021 * 120.00191 * 359.97438 * 22 16 13 24 24 O 1.21800 * 120.00109 * 187.43003 * 23 22 16 25 25 O 1.21801 * 119.99875 * 7.42907 * 23 22 16 26 26 H 1.09005 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47561 * 299.99987 * 1 2 3 28 28 H 1.09005 * 109.47085 * 60.00066 * 1 2 3 29 29 H 1.08995 * 109.47072 * 240.00217 * 2 1 3 30 30 H 1.08998 * 109.46719 * 119.99955 * 2 1 3 31 31 H 1.08995 * 109.47116 * 60.00244 * 3 2 1 32 32 H 1.08992 * 109.47064 * 299.99697 * 3 2 1 33 33 H 0.97004 * 119.99697 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.00069 * 359.97438 * 17 16 13 35 35 H 1.08007 * 119.99617 * 180.27990 * 18 17 16 36 36 H 1.09008 * 109.46719 * 269.97722 * 20 19 18 37 37 H 1.08994 * 109.47372 * 29.97402 * 20 19 18 38 38 H 1.08998 * 109.47205 * 149.98250 * 20 19 18 39 39 H 1.07999 * 119.99583 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.2056 1.1630 6 1 5.2683 1.1634 1.1553 7 6 3.4957 1.0195 2.3510 8 7 2.1831 0.9236 2.3386 9 14 4.4255 0.9053 3.9671 10 1 4.5690 2.2623 4.5526 11 1 3.6754 0.0364 4.9093 12 1 5.7712 0.3261 3.7241 13 16 4.3336 1.7291 -1.4042 14 8 5.6516 1.2389 -1.1998 15 8 3.4949 1.2858 -2.4623 16 6 4.4743 3.4767 -1.5796 17 6 3.7200 4.3147 -0.7794 18 6 3.8336 5.6855 -0.9139 19 6 4.6948 6.2188 -1.8549 20 6 4.8159 7.7135 -2.0041 21 6 5.4449 5.3810 -2.6585 22 6 5.3345 4.0097 -2.5209 23 7 6.1381 3.1126 -3.3813 24 8 6.9930 3.5765 -4.1144 25 8 5.9445 1.9103 -3.3561 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6985 0.7932 3.1687 34 1 3.0442 3.8981 -0.0470 35 1 3.2477 6.3402 -0.2857 36 1 4.0896 8.0655 -2.7368 37 1 4.6237 8.1913 -1.0435 38 1 5.8219 7.9647 -2.3402 39 1 6.1180 5.7975 -3.3932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:42 Heat of formation + Delta-G solvation = -44.983015 kcal Electronic energy + Delta-G solvation = -27462.616403 eV Core-core repulsion = 23501.183263 eV Total energy + Delta-G solvation = -3961.433141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -43.61145 -40.63545 -38.46783 -38.03627 -37.84208 -36.44375 -34.41938 -33.81753 -33.33314 -32.80036 -28.47870 -27.91915 -27.74325 -25.44644 -24.05503 -23.15693 -22.19693 -20.87027 -20.30950 -19.97360 -19.02973 -18.96443 -18.50829 -18.18852 -16.82281 -16.54097 -16.07649 -15.79127 -15.74360 -15.39510 -15.29597 -14.94589 -14.30007 -13.85994 -13.72984 -13.50670 -13.39973 -13.30561 -13.12762 -13.00308 -12.96120 -12.86055 -12.78641 -12.65250 -12.50830 -12.38844 -12.17132 -12.13569 -11.99984 -11.85008 -11.74851 -11.45189 -10.80548 -10.73967 -10.40046 -9.95394 -8.13193 -5.83034 -1.55208 -0.45017 -0.39957 0.07290 0.12709 1.50141 1.53259 1.62196 2.00812 2.22271 2.53532 2.86872 3.08078 3.25080 3.44078 3.69200 3.74480 3.89032 3.99810 4.22400 4.32278 4.41134 4.57219 4.60370 4.66812 4.72142 4.75411 4.79597 4.86751 5.09558 5.12741 5.16557 5.24570 5.34824 5.39109 5.44715 5.56920 5.85741 6.02690 6.18568 6.54671 6.81117 7.25286 8.65563 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.005414 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.151772 B = 5170.556793 C = 5566.176043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.112 4.112 3 C 0.130 3.870 4 N -0.825 5.825 5 C -0.297 4.297 6 H 0.097 0.903 7 C 0.014 3.986 8 N -0.844 5.844 9 Si 0.978 3.022 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.281 1.281 13 S 2.586 3.414 14 O -1.001 7.001 15 O -1.003 7.003 16 C -0.648 4.648 17 C -0.035 4.035 18 C -0.072 4.072 19 C -0.041 4.041 20 C -0.114 4.114 21 C -0.069 4.069 22 C 0.000 4.000 23 N 0.014 4.986 24 O -0.087 6.087 25 O -0.249 6.249 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.007 0.993 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.034 0.966 33 H 0.278 0.722 34 H 0.158 0.842 35 H 0.196 0.804 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 16.013 -0.005 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C 0.006 3.994 4 N -0.655 5.655 5 C -0.438 4.438 6 H 0.115 0.885 7 C -0.194 4.194 8 N -0.485 5.485 9 Si 0.802 3.198 10 H -0.188 1.188 11 H -0.196 1.196 12 H -0.207 1.207 13 S 2.680 3.320 14 O -0.990 6.990 15 O -0.992 6.992 16 C -0.727 4.727 17 C -0.054 4.054 18 C -0.090 4.090 19 C -0.041 4.041 20 C -0.170 4.170 21 C -0.089 4.089 22 C -0.083 4.083 23 N 0.530 4.470 24 O -0.326 6.326 25 O -0.437 6.437 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.175 0.825 35 H 0.213 0.787 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.997 15.738 -0.216 16.022 hybrid contribution 0.914 -0.538 0.224 1.084 sum -2.083 15.200 0.008 15.342 Atomic orbital electron populations 1.21511 0.94257 1.01245 1.01458 1.21734 0.96469 0.97318 0.99617 1.21772 0.77776 0.98618 1.01233 1.54166 1.14282 1.71534 1.25549 1.19843 0.92928 1.44683 0.86341 0.88544 1.25909 0.96670 0.95960 1.00823 1.70210 1.06376 1.43750 1.28168 0.85157 0.78058 0.78934 0.77646 1.18766 1.19625 1.20654 1.08266 0.72971 0.76868 0.73937 1.93346 1.39718 1.79745 1.86177 1.93368 1.68864 1.81090 1.55909 1.32118 1.03538 1.34359 1.02694 1.21314 0.94719 0.94527 0.94832 1.22219 0.96092 0.94182 0.96500 1.20712 0.92329 0.99010 0.92094 1.21074 1.05061 0.85221 1.05623 1.21491 0.99412 0.87808 1.00184 1.20840 0.99030 0.91490 0.96926 1.44243 1.00507 1.01872 1.00395 1.94336 1.24676 1.79268 1.34351 1.94629 1.75704 0.98704 1.74691 0.92796 0.91676 0.93389 0.97373 0.90447 0.85586 0.94725 0.91030 0.82450 0.78706 0.88005 0.87971 0.89187 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.91 71.98 0.71 -3.66 16 2 C -0.11 -4.91 5.46 30.60 0.17 -4.74 16 3 C 0.13 5.76 3.86 86.38 0.33 6.09 16 4 N -0.83 -40.45 2.12 -343.46 -0.73 -41.18 16 5 C -0.30 -14.88 9.50 84.03 0.80 -14.08 16 6 H 0.10 5.11 7.05 -2.91 -0.02 5.09 16 7 C 0.01 0.63 5.22 84.86 0.44 1.07 16 8 N -0.84 -36.62 7.36 21.65 0.16 -36.46 16 9 Si 0.98 36.76 29.56 68.60 2.03 38.79 16 10 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 11 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 13 S 2.59 135.44 3.87 -56.49 -0.22 135.22 16 14 O -1.00 -59.22 14.38 -118.55 -1.70 -60.92 16 15 O -1.00 -56.80 16.41 -120.69 -1.98 -58.78 16 16 C -0.65 -27.47 5.83 22.27 0.13 -27.34 16 17 C -0.03 -1.12 9.57 22.27 0.21 -0.91 16 18 C -0.07 -1.52 9.70 22.27 0.22 -1.30 16 19 C -0.04 -0.78 5.88 -19.87 -0.12 -0.90 16 20 C -0.11 -0.94 10.01 71.23 0.71 -0.23 16 21 C -0.07 -1.86 9.21 22.27 0.21 -1.65 16 22 C 0.00 0.01 6.81 36.37 0.25 0.26 16 23 N 0.01 0.66 4.45 -46.47 -0.21 0.45 16 24 O -0.09 -3.43 18.47 18.89 0.35 -3.08 16 25 O -0.25 -13.52 13.78 28.45 0.39 -13.13 16 26 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.53 8.14 -2.38 -0.02 1.52 16 29 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 3.66 6.09 -2.39 -0.01 3.65 16 31 H 0.13 5.35 5.69 -2.39 -0.01 5.34 16 32 H 0.03 1.45 7.52 -2.39 -0.02 1.43 16 33 H 0.28 11.16 8.31 -92.71 -0.77 10.39 16 34 H 0.16 5.01 6.54 -2.91 -0.02 4.99 16 35 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 38 H 0.09 0.58 8.09 -2.39 -0.02 0.57 16 39 H 0.18 3.66 7.63 -2.91 -0.02 3.64 16 Total: -1.00 -74.09 336.45 3.24 -70.85 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.08 Total: 15.63 kcal Atomic # 6 Polarization: -51.45 SS G_CDS: 4.06 Total: -47.39 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -0.77 Total: -77.18 kcal Atomic # 8 Polarization: -132.97 SS G_CDS: -2.94 Total: -135.92 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Atomic # 16 Polarization: 135.44 SS G_CDS: -0.22 Total: 135.22 kcal Total: -74.09 3.24 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.868 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds