Wall clock time and date at job start Tue Mar 31 2020 16:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47239 * 2 1 4 4 N 1.46504 * 109.47330 * 184.80089 * 3 2 1 5 5 C 1.36944 * 119.99649 * 85.27150 * 4 3 2 6 6 H 1.08003 * 119.99374 * 222.98924 * 5 4 3 7 7 C 1.38807 * 119.99847 * 43.26509 * 5 4 3 8 8 N 1.31620 * 119.99608 * 212.74161 * 7 5 4 9 9 Si 1.86801 * 120.00079 * 32.74414 * 7 5 4 10 10 H 1.48493 * 109.47160 * 87.71820 * 9 7 5 11 11 H 1.48508 * 109.46531 * 207.71872 * 9 7 5 12 12 H 1.48494 * 109.47036 * 327.71283 * 9 7 5 13 13 S 1.65596 * 120.00237 * 265.27746 * 4 3 2 14 14 O 1.42098 * 106.40437 * 23.53548 * 13 4 3 15 15 O 1.42099 * 106.40646 * 156.45844 * 13 4 3 16 16 C 1.76205 * 107.21509 * 269.99681 * 13 4 3 17 17 C 1.38265 * 119.99830 * 269.72628 * 16 13 4 18 18 C 1.38209 * 119.99674 * 179.74525 * 17 16 13 19 19 C 1.38259 * 120.00045 * 0.55082 * 18 17 16 20 20 N 1.48024 * 120.00035 * 179.72893 * 19 18 17 21 21 O 1.21801 * 119.99875 * 5.92585 * 20 19 18 22 22 O 1.21800 * 119.99911 * 185.93675 * 20 19 18 23 23 C 1.38211 * 120.00014 * 359.69800 * 19 18 17 24 24 C 1.50708 * 120.00213 * 179.97438 * 23 19 18 25 25 C 1.38211 * 119.99932 * 89.99951 * 16 13 4 26 26 H 1.08994 * 109.47293 * 184.87793 * 1 2 3 27 27 H 1.08998 * 109.46913 * 304.88029 * 1 2 3 28 28 H 1.09001 * 109.47136 * 64.87322 * 1 2 3 29 29 H 1.09000 * 109.47082 * 240.00385 * 2 1 3 30 30 H 1.09000 * 109.47053 * 120.00364 * 2 1 3 31 31 H 1.09001 * 109.47032 * 64.80791 * 3 2 1 32 32 H 1.09001 * 109.47404 * 304.80317 * 3 2 1 33 33 H 0.97000 * 119.99753 * 180.02562 * 8 7 5 34 34 H 1.07997 * 119.99645 * 359.97438 * 17 16 13 35 35 H 1.08000 * 120.00208 * 180.28193 * 18 17 16 36 36 H 1.09003 * 109.47116 * 277.69388 * 24 23 19 37 37 H 1.09001 * 109.46435 * 37.68784 * 24 23 19 38 38 H 1.08994 * 109.46826 * 157.68729 * 24 23 19 39 39 H 1.07995 * 120.00141 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5005 1.4441 -0.1156 5 6 4.0896 1.3801 -1.3502 6 1 4.9430 0.7374 -1.5085 7 6 3.5935 2.1456 -2.3964 8 7 3.6534 1.6913 -3.6303 9 14 2.8409 3.8205 -2.0533 10 1 3.9068 4.8543 -2.0667 11 1 1.8339 4.1342 -3.0987 12 1 2.1836 3.8044 -0.7218 13 16 4.4388 1.5232 1.2465 14 8 3.6395 1.0317 2.3136 15 8 5.6989 0.9659 0.8988 16 6 4.7253 3.2287 1.5842 17 6 5.8274 3.8648 1.0434 18 6 6.0492 5.2039 1.3040 19 6 5.1753 5.9044 2.1146 20 7 5.4162 7.3371 2.3985 21 8 6.3205 7.9262 1.8339 22 8 4.7102 7.9268 3.1969 23 6 4.0765 5.2672 2.6593 24 6 3.1242 6.0306 3.5434 25 6 3.8514 3.9291 2.3941 26 1 -0.3633 -1.0239 0.0874 27 1 -0.3633 0.5877 0.8430 28 1 -0.3633 0.4364 -0.9304 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7487 1.9308 0.9299 32 1 1.6082 1.9806 -0.8438 33 1 3.3071 2.2264 -4.3614 34 1 6.5128 3.3162 0.4144 35 1 6.9076 5.7020 0.8779 36 1 3.5236 6.0726 4.5567 37 1 3.0035 7.0432 3.1582 38 1 2.1569 5.5284 3.5544 39 1 2.9933 3.4310 2.8204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092368041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:18 Heat of formation + Delta-G solvation = -48.460457 kcal Electronic energy + Delta-G solvation = -26946.796763 eV Core-core repulsion = 22985.212829 eV Total energy + Delta-G solvation = -3961.583934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.19828 -39.27398 -36.79231 -36.63267 -36.10653 -34.67904 -33.27950 -33.01516 -31.86233 -31.76270 -27.78674 -26.31636 -25.95717 -24.11436 -22.73114 -22.16341 -21.26404 -19.05440 -18.71524 -18.50888 -17.66330 -17.54194 -16.98700 -16.42600 -15.85537 -15.54223 -14.71009 -14.43485 -14.15090 -13.91600 -13.72219 -13.52783 -13.35349 -13.20418 -12.97050 -12.79568 -12.41781 -12.09867 -12.05140 -11.51233 -11.36490 -11.34976 -11.24303 -11.11616 -11.05999 -10.96024 -10.80349 -10.78348 -10.60852 -10.44757 -10.21836 -10.01692 -9.66924 -9.37468 -9.01934 -8.40122 -7.20589 -4.50403 -0.20488 1.06838 1.21113 1.39465 1.50697 2.76448 2.87387 2.94803 3.21231 3.64417 3.89460 4.26683 4.38278 4.40738 4.67638 4.83667 5.11616 5.20494 5.34553 5.42731 5.44900 5.49034 5.51658 5.66756 5.72742 5.74849 5.80565 5.88190 5.99984 6.10917 6.18347 6.21531 6.31776 6.35292 6.56093 6.65443 6.74805 6.91621 6.98372 7.72428 7.84756 8.37942 8.56472 9.82794 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.005220 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.478172 B = 5363.107954 C = 5808.822324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.132 3.868 4 N -0.810 5.810 5 C -0.228 4.228 6 H 0.127 0.873 7 C 0.079 3.921 8 N -0.781 5.781 9 Si 0.851 3.149 10 H -0.265 1.265 11 H -0.270 1.270 12 H -0.248 1.248 13 S 2.480 3.520 14 O -0.995 6.995 15 O -0.968 6.968 16 C -0.601 4.601 17 C -0.037 4.037 18 C -0.075 4.075 19 C -0.030 4.030 20 N 0.034 4.966 21 O -0.172 6.172 22 O -0.164 6.164 23 C -0.043 4.043 24 C -0.128 4.128 25 C -0.044 4.044 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.290 0.710 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 3.966 4.870 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.006 3.994 4 N -0.631 5.631 5 C -0.382 4.382 6 H 0.144 0.856 7 C -0.143 4.143 8 N -0.413 5.413 9 Si 0.674 3.326 10 H -0.190 1.190 11 H -0.194 1.194 12 H -0.171 1.171 13 S 2.583 3.417 14 O -0.985 6.985 15 O -0.958 6.958 16 C -0.676 4.676 17 C -0.057 4.057 18 C -0.095 4.095 19 C -0.113 4.113 20 N 0.549 4.451 21 O -0.385 6.385 22 O -0.378 6.378 23 C -0.045 4.045 24 C -0.184 4.184 25 C -0.064 4.064 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.178 0.822 35 H 0.171 0.829 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.891 2.723 5.452 7.231 hybrid contribution -0.064 2.277 -0.014 2.278 sum -3.955 5.000 5.438 8.379 Atomic orbital electron populations 1.21708 0.96124 1.01357 1.01375 1.21870 0.94869 0.97338 1.03483 1.21430 0.79868 0.97255 1.00895 1.54310 1.12497 1.76850 1.19395 1.19525 1.17179 1.19939 0.81604 0.85557 1.25993 0.95156 0.98282 0.94847 1.69926 1.35060 1.36118 1.00192 0.87286 0.80473 0.84247 0.80641 1.19003 1.19439 1.17137 1.14363 0.75049 0.76598 0.75709 1.93340 1.68644 1.79352 1.57134 1.93372 1.43095 1.76240 1.83107 1.33276 0.99355 1.33878 1.01077 1.21027 0.95800 0.92399 0.96425 1.21190 0.98533 0.94849 0.94899 1.21066 1.01701 0.80800 1.07760 1.43669 0.99197 1.03413 0.98813 1.94519 1.24270 1.68222 1.51487 1.94437 1.44593 1.68887 1.29835 1.19991 0.93608 0.94711 0.96201 1.21258 0.97239 1.01054 0.98896 1.20884 0.98993 0.91376 0.95124 0.92794 0.93052 0.92879 0.90301 0.91463 0.91660 0.91748 0.89946 0.82246 0.82943 0.89610 0.88675 0.90780 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.24 6.24 -26.73 -0.17 -2.41 16 3 C 0.13 2.36 3.95 -4.04 -0.02 2.35 16 4 N -0.81 -16.51 2.32 -59.90 -0.14 -16.65 16 5 C -0.23 -5.03 9.27 -15.06 -0.14 -5.17 16 6 H 0.13 3.03 7.74 -52.48 -0.41 2.62 16 7 C 0.08 1.72 5.07 -17.43 -0.09 1.64 16 8 N -0.78 -17.59 13.97 55.49 0.78 -16.81 16 9 Si 0.85 16.69 26.62 -169.99 -4.52 12.16 16 10 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 12 H -0.25 -4.58 5.88 56.52 0.33 -4.25 16 13 S 2.48 51.67 5.60 -107.50 -0.60 51.07 16 14 O -1.00 -21.57 16.26 -57.17 -0.93 -22.50 16 15 O -0.97 -22.66 16.29 -57.17 -0.93 -23.59 16 16 C -0.60 -11.20 5.97 -39.58 -0.24 -11.44 16 17 C -0.04 -0.65 9.52 -39.58 -0.38 -1.03 16 18 C -0.07 -1.22 9.56 -39.58 -0.38 -1.60 16 19 C -0.03 -0.50 6.83 -79.95 -0.55 -1.04 16 20 N 0.03 0.57 4.45 33.96 0.15 0.72 16 21 O -0.17 -2.95 18.46 -29.46 -0.54 -3.50 16 22 O -0.16 -2.65 15.37 -29.46 -0.45 -3.10 16 23 C -0.04 -0.68 5.88 -104.62 -0.62 -1.30 16 24 C -0.13 -1.62 8.66 36.01 0.31 -1.31 16 25 C -0.04 -0.74 9.15 -39.58 -0.36 -1.11 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 32 H 0.06 1.13 4.75 -51.93 -0.25 0.88 16 33 H 0.29 5.97 8.31 -40.82 -0.34 5.63 16 34 H 0.16 2.65 7.61 -52.49 -0.40 2.25 16 35 H 0.15 2.13 7.62 -52.49 -0.40 1.73 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.22 5.91 -51.93 -0.31 0.92 16 38 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 39 H 0.15 2.29 7.61 -52.49 -0.40 1.89 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -26.19 343.51 -8.98 -35.17 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -4.71 Total: 5.84 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -2.25 Total: -23.98 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.79 Total: -32.74 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -2.86 Total: -52.69 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.52 Total: 12.16 kcal Atomic # 16 Polarization: 51.67 SS G_CDS: -0.60 Total: 51.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -26.19 -8.98 -35.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.295 kcal (2) G-P(sol) polarization free energy of solvation -26.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds