Wall clock time and date at job start Tue Mar 31 2020 16:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47239 * 2 1 4 4 N 1.46504 * 109.47330 * 184.80089 * 3 2 1 5 5 C 1.36944 * 119.99649 * 85.27150 * 4 3 2 6 6 H 1.08003 * 119.99374 * 222.98924 * 5 4 3 7 7 C 1.38807 * 119.99847 * 43.26509 * 5 4 3 8 8 N 1.31620 * 119.99608 * 212.74161 * 7 5 4 9 9 Si 1.86801 * 120.00079 * 32.74414 * 7 5 4 10 10 H 1.48493 * 109.47160 * 87.71820 * 9 7 5 11 11 H 1.48508 * 109.46531 * 207.71872 * 9 7 5 12 12 H 1.48494 * 109.47036 * 327.71283 * 9 7 5 13 13 S 1.65596 * 120.00237 * 265.27746 * 4 3 2 14 14 O 1.42098 * 106.40437 * 23.53548 * 13 4 3 15 15 O 1.42099 * 106.40646 * 156.45844 * 13 4 3 16 16 C 1.76205 * 107.21509 * 269.99681 * 13 4 3 17 17 C 1.38265 * 119.99830 * 269.72628 * 16 13 4 18 18 C 1.38209 * 119.99674 * 179.74525 * 17 16 13 19 19 C 1.38259 * 120.00045 * 0.55082 * 18 17 16 20 20 N 1.48024 * 120.00035 * 179.72893 * 19 18 17 21 21 O 1.21801 * 119.99875 * 5.92585 * 20 19 18 22 22 O 1.21800 * 119.99911 * 185.93675 * 20 19 18 23 23 C 1.38211 * 120.00014 * 359.69800 * 19 18 17 24 24 C 1.50708 * 120.00213 * 179.97438 * 23 19 18 25 25 C 1.38211 * 119.99932 * 89.99951 * 16 13 4 26 26 H 1.08994 * 109.47293 * 184.87793 * 1 2 3 27 27 H 1.08998 * 109.46913 * 304.88029 * 1 2 3 28 28 H 1.09001 * 109.47136 * 64.87322 * 1 2 3 29 29 H 1.09000 * 109.47082 * 240.00385 * 2 1 3 30 30 H 1.09000 * 109.47053 * 120.00364 * 2 1 3 31 31 H 1.09001 * 109.47032 * 64.80791 * 3 2 1 32 32 H 1.09001 * 109.47404 * 304.80317 * 3 2 1 33 33 H 0.97000 * 119.99753 * 180.02562 * 8 7 5 34 34 H 1.07997 * 119.99645 * 359.97438 * 17 16 13 35 35 H 1.08000 * 120.00208 * 180.28193 * 18 17 16 36 36 H 1.09003 * 109.47116 * 277.69388 * 24 23 19 37 37 H 1.09001 * 109.46435 * 37.68784 * 24 23 19 38 38 H 1.08994 * 109.46826 * 157.68729 * 24 23 19 39 39 H 1.07995 * 120.00141 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5005 1.4441 -0.1156 5 6 4.0896 1.3801 -1.3502 6 1 4.9430 0.7374 -1.5085 7 6 3.5935 2.1456 -2.3964 8 7 3.6534 1.6913 -3.6303 9 14 2.8409 3.8205 -2.0533 10 1 3.9068 4.8543 -2.0667 11 1 1.8339 4.1342 -3.0987 12 1 2.1836 3.8044 -0.7218 13 16 4.4388 1.5232 1.2465 14 8 3.6395 1.0317 2.3136 15 8 5.6989 0.9659 0.8988 16 6 4.7253 3.2287 1.5842 17 6 5.8274 3.8648 1.0434 18 6 6.0492 5.2039 1.3040 19 6 5.1753 5.9044 2.1146 20 7 5.4162 7.3371 2.3985 21 8 6.3205 7.9262 1.8339 22 8 4.7102 7.9268 3.1969 23 6 4.0765 5.2672 2.6593 24 6 3.1242 6.0306 3.5434 25 6 3.8514 3.9291 2.3941 26 1 -0.3633 -1.0239 0.0874 27 1 -0.3633 0.5877 0.8430 28 1 -0.3633 0.4364 -0.9304 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.7487 1.9308 0.9299 32 1 1.6082 1.9806 -0.8438 33 1 3.3071 2.2264 -4.3614 34 1 6.5128 3.3162 0.4144 35 1 6.9076 5.7020 0.8779 36 1 3.5236 6.0726 4.5567 37 1 3.0035 7.0432 3.1582 38 1 2.1569 5.5284 3.5544 39 1 2.9933 3.4310 2.8204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092368041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:16 Heat of formation + Delta-G solvation = -62.577827 kcal Electronic energy + Delta-G solvation = -26947.408938 eV Core-core repulsion = 22985.212829 eV Total energy + Delta-G solvation = -3962.196109 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.51289 -40.60115 -38.30398 -37.95665 -37.88025 -36.49727 -34.76466 -34.27207 -33.25072 -33.15644 -29.00109 -27.72709 -27.24727 -25.66112 -24.06416 -23.48584 -22.57111 -20.53187 -20.15171 -19.89154 -19.22490 -18.87593 -18.55104 -18.07323 -17.36677 -16.97155 -16.05026 -15.89624 -15.56153 -15.23736 -15.10004 -14.94565 -14.79483 -14.56367 -14.39549 -13.91539 -13.59499 -13.55736 -13.39452 -12.94202 -12.85770 -12.77212 -12.68307 -12.64170 -12.44213 -12.42997 -12.40172 -12.16716 -12.03744 -11.90092 -11.64154 -11.40187 -11.07340 -10.95341 -10.28608 -9.99643 -8.82123 -6.21168 -1.54381 -0.36710 -0.23872 -0.00791 0.15697 1.20107 1.34592 1.35069 1.83722 2.05977 2.31142 2.64086 3.00901 3.11324 3.20061 3.43022 3.83884 3.89790 4.01944 4.08473 4.15810 4.25357 4.36264 4.46546 4.48258 4.58810 4.59663 4.76838 4.80868 4.82811 4.90435 5.01318 5.06442 5.16421 5.31431 5.34529 5.38995 5.47671 5.61338 6.14527 6.41630 6.73791 6.93480 8.27046 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.005220 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.478172 B = 5363.107954 C = 5808.822324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.118 3.882 4 N -0.817 5.817 5 C -0.259 4.259 6 H 0.090 0.910 7 C 0.062 3.938 8 N -0.824 5.824 9 Si 0.884 3.116 10 H -0.277 1.277 11 H -0.263 1.263 12 H -0.226 1.226 13 S 2.521 3.479 14 O -1.000 7.000 15 O -0.999 6.999 16 C -0.621 4.621 17 C -0.047 4.047 18 C -0.074 4.074 19 C -0.036 4.036 20 N 0.032 4.968 21 O -0.193 6.193 22 O -0.138 6.138 23 C -0.037 4.037 24 C -0.130 4.130 25 C -0.044 4.044 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.294 0.706 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 5.871 7.193 11.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C -0.007 4.007 4 N -0.641 5.641 5 C -0.410 4.410 6 H 0.107 0.893 7 C -0.157 4.157 8 N -0.458 5.458 9 Si 0.705 3.295 10 H -0.202 1.202 11 H -0.187 1.187 12 H -0.149 1.149 13 S 2.625 3.375 14 O -0.990 6.990 15 O -0.989 6.989 16 C -0.699 4.699 17 C -0.067 4.067 18 C -0.093 4.093 19 C -0.120 4.120 20 N 0.548 4.452 21 O -0.400 6.400 22 O -0.359 6.359 23 C -0.039 4.039 24 C -0.186 4.186 25 C -0.063 4.063 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.676 4.584 7.667 10.584 hybrid contribution 0.551 1.786 -0.400 1.912 sum -5.124 6.371 7.267 10.939 Atomic orbital electron populations 1.21689 0.93236 1.02759 1.02382 1.21862 0.97414 0.96252 1.02073 1.21763 0.78481 0.98429 1.02044 1.53917 1.13397 1.78445 1.18320 1.18982 1.17312 1.21637 0.83027 0.89262 1.26225 0.95310 0.99825 0.94311 1.69963 1.37535 1.37246 1.01043 0.86770 0.79908 0.81042 0.81798 1.20246 1.18676 1.14883 1.11798 0.74094 0.76564 0.75003 1.93344 1.68813 1.79876 1.56955 1.93353 1.44493 1.77399 1.83689 1.32810 1.01310 1.32144 1.03676 1.21097 0.95778 0.93181 0.96620 1.21350 0.99134 0.94276 0.94568 1.21311 1.02043 0.80926 1.07698 1.43673 0.99261 1.03390 0.98919 1.94541 1.24872 1.68309 1.52296 1.94425 1.43823 1.68750 1.28883 1.20351 0.93516 0.94423 0.95632 1.21410 0.97722 1.00738 0.98723 1.21158 0.98973 0.91877 0.94319 0.91381 0.91491 0.92300 0.92222 0.92405 0.89598 0.91292 0.89521 0.82294 0.81057 0.88020 0.88658 0.88174 0.80839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.14 -4.41 6.24 30.59 0.19 -4.22 16 3 C 0.12 4.10 3.95 86.38 0.34 4.44 16 4 N -0.82 -33.47 2.32 -343.44 -0.80 -34.27 16 5 C -0.26 -11.94 9.27 84.03 0.78 -11.16 16 6 H 0.09 4.65 7.74 -2.91 -0.02 4.63 16 7 C 0.06 2.77 5.07 84.86 0.43 3.20 16 8 N -0.82 -38.81 13.97 21.65 0.30 -38.51 16 9 Si 0.88 33.65 26.62 68.60 1.83 35.48 16 10 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 12 H -0.23 -7.71 5.88 99.48 0.58 -7.12 16 13 S 2.52 103.81 5.60 -56.49 -0.32 103.49 16 14 O -1.00 -41.67 16.26 -128.00 -2.08 -43.75 16 15 O -1.00 -47.69 16.29 -128.00 -2.08 -49.77 16 16 C -0.62 -22.06 5.97 22.27 0.13 -21.93 16 17 C -0.05 -1.61 9.52 22.27 0.21 -1.40 16 18 C -0.07 -2.26 9.56 22.27 0.21 -2.05 16 19 C -0.04 -1.11 6.83 36.37 0.25 -0.86 16 20 N 0.03 0.97 4.45 -46.46 -0.21 0.76 16 21 O -0.19 -6.23 18.46 18.88 0.35 -5.88 16 22 O -0.14 -3.95 15.37 18.89 0.29 -3.66 16 23 C -0.04 -1.03 5.88 -19.86 -0.12 -1.15 16 24 C -0.13 -2.65 8.66 71.24 0.62 -2.03 16 25 C -0.04 -1.33 9.15 22.27 0.20 -1.12 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 2.57 7.62 -2.39 -0.02 2.56 16 32 H 0.07 2.33 4.75 -2.39 -0.01 2.32 16 33 H 0.29 12.61 8.31 -92.71 -0.77 11.84 16 34 H 0.16 5.35 7.61 -2.91 -0.02 5.32 16 35 H 0.17 4.49 7.62 -2.91 -0.02 4.47 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 2.00 5.91 -2.39 -0.01 1.99 16 38 H 0.10 1.56 8.03 -2.39 -0.02 1.54 16 39 H 0.17 4.44 7.61 -2.91 -0.02 4.42 16 Total: -1.00 -56.53 343.51 2.21 -54.33 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.96 Total: 22.79 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 3.97 Total: -41.01 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -0.70 Total: -72.01 kcal Atomic # 8 Polarization: -99.53 SS G_CDS: -3.53 Total: -103.06 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 1.83 Total: 35.48 kcal Atomic # 16 Polarization: 103.81 SS G_CDS: -0.32 Total: 103.49 kcal Total: -56.53 2.21 -54.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.251 kcal (2) G-P(sol) polarization free energy of solvation -56.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds