Wall clock time and date at job start Tue Mar 31 2020 14:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47229 * 240.00220 * 3 2 1 5 5 H 1.48500 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47128 * 120.00236 * 3 2 1 7 7 C 1.37876 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99519 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46699 * 179.97438 * 9 7 2 11 11 O 1.42907 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99946 * 179.97438 * 11 10 9 13 13 C 1.38914 * 119.97515 * 359.97438 * 12 11 10 14 14 C 1.38289 * 120.29541 * 180.02562 * 13 12 11 15 15 C 1.37922 * 120.23783 * 0.02562 * 14 13 12 16 16 C 1.39865 * 119.93577 * 359.97438 * 15 14 13 17 17 C 1.47174 * 120.14539 * 179.72478 * 16 15 14 18 18 C 1.34893 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.46489 * 119.99981 * 179.97438 * 18 17 16 20 20 O 1.21889 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.46644 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.36810 * 125.46339 * 179.72121 * 21 19 18 23 23 C 1.37414 * 113.27898 * 179.86563 * 22 21 19 24 24 C 1.33898 * 115.10580 * 0.42628 * 23 22 21 25 25 S 1.70609 * 110.97037 * 359.76257 * 24 23 22 26 26 C 1.38379 * 119.96965 * 180.02562 * 12 11 10 27 27 H 0.96997 * 120.00546 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47916 * 60.00069 * 9 7 2 29 29 H 1.09002 * 109.47351 * 299.99358 * 9 7 2 30 30 H 1.08999 * 109.47142 * 60.00033 * 10 9 7 31 31 H 1.09002 * 109.47174 * 299.99483 * 10 9 7 32 32 H 1.08002 * 119.84778 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.87775 * 179.97438 * 14 13 12 34 34 H 1.08005 * 120.03488 * 180.02562 * 15 14 13 35 35 H 1.07998 * 119.99836 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.99393 * 359.97438 * 18 17 16 37 37 H 1.08001 * 123.35520 * 0.02562 * 22 21 19 38 38 H 1.08004 * 122.44777 * 180.16362 * 23 22 21 39 39 H 1.08005 * 124.51501 * 179.76733 * 24 23 22 40 40 H 1.08004 * 120.11169 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.2712 -6.0393 0.0007 13 6 3.6584 -5.9659 -0.0009 14 6 4.4182 -7.1214 -0.0019 15 6 3.8041 -8.3564 -0.0019 16 6 2.4081 -8.4418 -0.0003 17 6 1.7480 -9.7572 -0.0065 18 6 2.4896 -10.8839 -0.0131 19 6 1.8325 -12.1932 -0.0186 20 8 0.6157 -12.2644 -0.0167 21 6 2.6387 -13.4181 -0.0263 22 6 2.1443 -14.6938 -0.0266 23 6 3.1250 -15.6563 -0.0376 24 6 4.3798 -15.1889 -0.0372 25 16 4.3959 -13.4829 -0.0292 26 6 1.6424 -7.2720 0.0007 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 4.1457 -5.0021 -0.0013 33 1 5.4962 -7.0565 -0.0035 34 1 4.4007 -9.2568 -0.0023 35 1 0.6699 -9.8203 -0.0057 36 1 3.5677 -10.8207 -0.0143 37 1 1.0886 -14.9215 -0.0213 38 1 2.9001 -16.7126 -0.0419 39 1 5.2639 -15.8092 -0.0415 40 1 0.5640 -7.3301 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102598423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:46 Heat of formation + Delta-G solvation = -10.219657 kcal Electronic energy + Delta-G solvation = -22504.977985 eV Core-core repulsion = 18955.901560 eV Total energy + Delta-G solvation = -3549.076425 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03727 -39.63622 -37.85167 -37.41441 -33.99750 -33.36874 -31.19901 -30.73010 -29.77718 -28.94902 -26.14795 -25.16227 -23.89052 -22.57076 -22.00559 -20.70453 -19.68906 -19.45473 -18.17381 -17.56622 -16.40917 -16.26635 -15.96196 -15.76227 -15.42017 -15.26219 -14.89062 -14.63164 -14.41139 -14.11017 -13.54308 -13.24744 -13.20798 -13.11901 -12.98917 -12.61612 -12.42241 -12.30214 -11.75977 -11.64366 -11.40824 -11.25517 -10.95164 -10.83107 -10.55972 -10.38114 -10.26148 -9.91369 -9.70904 -9.35651 -9.31939 -9.03243 -8.55211 -8.46910 -7.98775 -6.13207 -4.18487 -0.19798 0.48869 1.08184 1.48887 1.49257 1.72766 2.20627 2.99624 3.26512 3.31059 3.32474 3.55271 3.81375 3.86765 4.37650 4.51076 4.58554 4.72977 4.86067 4.87263 5.00333 5.04617 5.11978 5.20748 5.23114 5.45294 5.47438 5.51755 5.72806 5.78910 5.86328 5.94867 5.95895 6.02437 6.07288 6.35176 6.42204 6.51043 6.62176 6.76889 7.21817 7.44521 7.59304 7.74669 7.97226 8.19380 8.86740 9.46076 10.98178 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.001643 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.478393 B =17037.592351 C =17712.572321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.314 6.314 12 C 0.142 3.858 13 C -0.194 4.194 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.055 4.055 17 C 0.012 3.988 18 C -0.250 4.250 19 C 0.455 3.545 20 O -0.456 6.456 21 C -0.285 4.285 22 C -0.062 4.062 23 C -0.153 4.153 24 C -0.235 4.235 25 S 0.224 5.776 26 C -0.131 4.131 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.134 0.866 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.169 0.831 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 -29.966 -0.048 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.227 6.227 12 C 0.095 3.905 13 C -0.212 4.212 14 C -0.102 4.102 15 C -0.164 4.164 16 C -0.055 4.055 17 C -0.007 4.007 18 C -0.269 4.269 19 C 0.336 3.664 20 O -0.336 6.336 21 C -0.403 4.403 22 C -0.095 4.095 23 C -0.184 4.184 24 C -0.373 4.373 25 S 0.492 5.508 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.162 0.838 39 H 0.186 0.814 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.149 -28.751 -0.043 30.837 hybrid contribution -0.211 -0.253 -0.005 0.329 sum 10.937 -29.004 -0.048 30.998 Atomic orbital electron populations 1.69959 1.06106 1.27146 1.49416 1.24986 0.94908 0.99387 0.94832 0.86540 0.79502 0.82575 0.78713 1.20091 1.21083 1.20082 1.20923 0.93006 0.90201 1.52621 0.92398 1.19127 0.94163 0.88944 0.98953 1.23381 0.97181 0.80696 0.99724 1.86203 1.36449 1.13154 1.86859 1.19080 0.90121 0.87634 0.93688 1.21605 0.93175 1.00151 1.06303 1.20850 0.99747 0.91653 0.97929 1.21179 0.93372 0.97812 1.04021 1.18670 0.93160 0.91717 1.02000 1.22579 1.00473 0.90586 0.87050 1.23270 1.00904 0.92600 1.10121 1.19288 0.87657 0.87150 0.72316 1.90717 1.15283 1.89350 1.38204 1.25239 0.98169 0.98845 1.18088 1.20941 1.01536 0.90377 0.96606 1.20073 0.91431 1.01424 1.05506 1.25480 1.02457 1.00831 1.08544 1.83074 1.01032 1.00308 1.66404 1.20651 1.00457 0.89103 1.04767 0.92603 0.95346 0.95334 0.93002 0.92995 0.84807 0.85593 0.85784 0.84488 0.85041 0.83046 0.83835 0.81387 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.06 1.33 4.68 37.16 0.17 1.50 16 11 O -0.31 -6.21 10.13 -19.43 -0.20 -6.40 16 12 C 0.14 2.33 6.68 -39.28 -0.26 2.07 16 13 C -0.19 -2.78 9.04 -39.31 -0.36 -3.13 16 14 C -0.08 -0.97 10.02 -39.68 -0.40 -1.37 16 15 C -0.15 -1.60 9.41 -39.09 -0.37 -1.97 16 16 C -0.06 -0.68 5.87 -105.08 -0.62 -1.29 16 17 C 0.01 0.13 9.46 -37.14 -0.35 -0.22 16 18 C -0.25 -2.45 9.08 -37.45 -0.34 -2.79 16 19 C 0.45 4.99 7.06 -32.87 -0.23 4.76 16 20 O -0.46 -6.26 16.74 5.02 0.08 -6.18 16 21 C -0.29 -2.60 6.42 -36.71 -0.24 -2.83 16 22 C -0.06 -0.51 10.02 -40.40 -0.40 -0.91 16 23 C -0.15 -0.97 10.15 -41.41 -0.42 -1.39 16 24 C -0.24 -1.32 10.93 29.21 0.32 -1.00 16 25 S 0.22 1.43 22.10 -107.50 -2.38 -0.95 16 26 C -0.13 -1.88 9.73 -38.94 -0.38 -2.26 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.01 7.66 -51.93 -0.40 0.62 16 31 H 0.05 1.01 7.65 -51.93 -0.40 0.62 16 32 H 0.13 1.87 6.28 -52.49 -0.33 1.54 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.02 6.16 -52.48 -0.32 0.69 16 35 H 0.14 1.48 7.52 -52.49 -0.39 1.08 16 36 H 0.13 1.02 5.42 -52.49 -0.28 0.74 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 39 H 0.17 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.14 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -31.49 364.88 -10.33 -41.82 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.63 Total: -0.78 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -4.43 Total: -23.56 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.43 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.11 Total: -12.58 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.38 Total: -0.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.49 -10.33 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.605 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds