Wall clock time and date at job start Tue Mar 31 2020 14:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47229 * 240.00220 * 3 2 1 5 5 H 1.48500 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47128 * 120.00236 * 3 2 1 7 7 C 1.37876 * 120.00458 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99519 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46699 * 179.97438 * 9 7 2 11 11 O 1.42907 * 109.47102 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99946 * 179.97438 * 11 10 9 13 13 C 1.38914 * 119.97515 * 359.97438 * 12 11 10 14 14 C 1.38289 * 120.29541 * 180.02562 * 13 12 11 15 15 C 1.37922 * 120.23783 * 0.02562 * 14 13 12 16 16 C 1.39865 * 119.93577 * 359.97438 * 15 14 13 17 17 C 1.47174 * 120.14539 * 179.72478 * 16 15 14 18 18 C 1.34893 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.46489 * 119.99981 * 179.97438 * 18 17 16 20 20 O 1.21889 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.46644 * 119.99864 * 179.97438 * 19 18 17 22 22 C 1.36810 * 125.46339 * 179.72121 * 21 19 18 23 23 C 1.37414 * 113.27898 * 179.86563 * 22 21 19 24 24 C 1.33898 * 115.10580 * 0.42628 * 23 22 21 25 25 S 1.70609 * 110.97037 * 359.76257 * 24 23 22 26 26 C 1.38379 * 119.96965 * 180.02562 * 12 11 10 27 27 H 0.96997 * 120.00546 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.47916 * 60.00069 * 9 7 2 29 29 H 1.09002 * 109.47351 * 299.99358 * 9 7 2 30 30 H 1.08999 * 109.47142 * 60.00033 * 10 9 7 31 31 H 1.09002 * 109.47174 * 299.99483 * 10 9 7 32 32 H 1.08002 * 119.84778 * 0.02562 * 13 12 11 33 33 H 1.08001 * 119.87775 * 179.97438 * 14 13 12 34 34 H 1.08005 * 120.03488 * 180.02562 * 15 14 13 35 35 H 1.07998 * 119.99836 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.99393 * 359.97438 * 18 17 16 37 37 H 1.08001 * 123.35520 * 0.02562 * 22 21 19 38 38 H 1.08004 * 122.44777 * 180.16362 * 23 22 21 39 39 H 1.08005 * 124.51501 * 179.76733 * 24 23 22 40 40 H 1.08004 * 120.11169 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.2712 -6.0393 0.0007 13 6 3.6584 -5.9659 -0.0009 14 6 4.4182 -7.1214 -0.0019 15 6 3.8041 -8.3564 -0.0019 16 6 2.4081 -8.4418 -0.0003 17 6 1.7480 -9.7572 -0.0065 18 6 2.4896 -10.8839 -0.0131 19 6 1.8325 -12.1932 -0.0186 20 8 0.6157 -12.2644 -0.0167 21 6 2.6387 -13.4181 -0.0263 22 6 2.1443 -14.6938 -0.0266 23 6 3.1250 -15.6563 -0.0376 24 6 4.3798 -15.1889 -0.0372 25 16 4.3959 -13.4829 -0.0292 26 6 1.6424 -7.2720 0.0007 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8720 -3.6042 -0.8895 32 1 4.1457 -5.0021 -0.0013 33 1 5.4962 -7.0565 -0.0035 34 1 4.4007 -9.2568 -0.0023 35 1 0.6699 -9.8203 -0.0057 36 1 3.5677 -10.8207 -0.0143 37 1 1.0886 -14.9215 -0.0213 38 1 2.9001 -16.7126 -0.0419 39 1 5.2639 -15.8092 -0.0415 40 1 0.5640 -7.3301 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102598423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:46 Heat of formation + Delta-G solvation = -26.077286 kcal Electronic energy + Delta-G solvation = -22505.665623 eV Core-core repulsion = 18955.901560 eV Total energy + Delta-G solvation = -3549.764064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14391 -40.55282 -38.79337 -38.28484 -35.53852 -34.83466 -32.64953 -31.74089 -30.92907 -29.96886 -27.19324 -26.65858 -24.81193 -23.62633 -23.32516 -22.03222 -20.53935 -20.19757 -19.04512 -18.78604 -18.09255 -17.13692 -16.98499 -16.96086 -16.73609 -16.48823 -16.18910 -15.74004 -15.19261 -15.05420 -14.56683 -14.42642 -14.36245 -14.26946 -13.81833 -13.69050 -13.47887 -13.30073 -13.14385 -13.04911 -12.69082 -12.53982 -12.47074 -11.99441 -11.82571 -11.76679 -11.58445 -11.40875 -11.21399 -11.11103 -10.61496 -9.89467 -9.56570 -9.48117 -9.11202 -8.26381 -6.40535 -0.95190 -0.27903 0.45708 0.56012 0.86641 0.98765 1.41466 1.45377 1.53401 1.57396 2.20544 2.23228 2.47567 2.85182 2.92865 3.08094 3.71814 3.81941 3.91346 4.09186 4.15595 4.19409 4.26380 4.26994 4.29821 4.37930 4.49639 4.50481 4.54311 4.72991 4.90695 4.96845 5.05060 5.16494 5.27265 5.29505 5.35845 5.40409 5.44183 5.46299 5.54998 5.66829 5.81054 6.06462 6.41049 6.51686 6.74287 7.29856 8.86380 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.040250 B = 0.001643 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.478393 B =17037.592351 C =17712.572321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.027 3.973 10 C 0.084 3.916 11 O -0.342 6.342 12 C 0.105 3.895 13 C -0.204 4.204 14 C -0.075 4.075 15 C -0.134 4.134 16 C -0.051 4.051 17 C -0.003 4.003 18 C -0.230 4.230 19 C 0.452 3.548 20 O -0.497 6.497 21 C -0.325 4.325 22 C -0.066 4.066 23 C -0.166 4.166 24 C -0.223 4.223 25 S 0.263 5.737 26 C -0.148 4.148 27 H 0.266 0.734 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.128 0.872 36 H 0.159 0.841 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.199 0.801 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.245 -31.883 -0.057 35.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.091 0.909 9 C -0.011 4.011 10 C 0.010 3.990 11 O -0.257 6.257 12 C 0.059 3.941 13 C -0.222 4.222 14 C -0.093 4.093 15 C -0.151 4.151 16 C -0.051 4.051 17 C -0.022 4.022 18 C -0.248 4.248 19 C 0.336 3.664 20 O -0.380 6.380 21 C -0.443 4.443 22 C -0.100 4.100 23 C -0.196 4.196 24 C -0.361 4.361 25 S 0.531 5.469 26 C -0.167 4.167 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.146 0.854 36 H 0.176 0.824 37 H 0.162 0.838 38 H 0.182 0.818 39 H 0.216 0.784 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.457 -30.695 -0.053 34.367 hybrid contribution -1.488 0.045 -0.002 1.489 sum 13.969 -30.650 -0.055 33.683 Atomic orbital electron populations 1.70115 1.08100 1.28277 1.50516 1.26052 0.95804 1.03733 0.94124 0.85330 0.78096 0.77141 0.79454 1.18785 1.20917 1.18772 1.21384 0.93913 0.90963 1.52293 0.90892 1.18975 0.94624 0.91507 0.95962 1.22897 0.95395 0.80000 1.00741 1.86104 1.37510 1.13780 1.88270 1.19365 0.91284 0.86716 0.96696 1.21747 0.92257 1.01526 1.06707 1.21257 1.01407 0.90607 0.96040 1.21642 0.92801 0.99190 1.01490 1.18790 0.93958 0.91164 1.01160 1.22472 1.00355 0.90553 0.88832 1.23454 1.01977 0.91572 1.07801 1.19658 0.87348 0.88361 0.71079 1.90701 1.16997 1.89945 1.40313 1.25186 1.00196 0.98187 1.20741 1.21133 1.01951 0.90865 0.96067 1.20252 0.91261 1.02138 1.05978 1.25930 1.03226 1.00895 1.06031 1.82841 0.97998 1.00776 1.65319 1.20759 1.00690 0.89453 1.05763 0.92485 0.98422 0.98412 0.91876 0.91865 0.84769 0.81871 0.81984 0.85391 0.82357 0.83772 0.81846 0.78410 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.03 1.45 5.34 29.85 0.16 1.60 16 10 C 0.08 3.59 4.68 71.98 0.34 3.93 16 11 O -0.34 -14.35 10.13 -92.45 -0.94 -15.28 16 12 C 0.10 3.54 6.68 22.47 0.15 3.69 16 13 C -0.20 -5.64 9.04 22.44 0.20 -5.43 16 14 C -0.08 -1.50 10.02 22.21 0.22 -1.28 16 15 C -0.13 -2.48 9.41 22.59 0.21 -2.26 16 16 C -0.05 -1.18 5.87 -20.16 -0.12 -1.30 16 17 C 0.00 -0.07 9.46 23.85 0.23 0.15 16 18 C -0.23 -4.11 9.08 23.65 0.21 -3.89 16 19 C 0.45 9.73 7.06 26.62 0.19 9.92 16 20 O -0.50 -14.20 16.74 -4.96 -0.08 -14.28 16 21 C -0.33 -5.48 6.42 24.13 0.15 -5.33 16 22 C -0.07 -1.03 10.02 21.74 0.22 -0.81 16 23 C -0.17 -1.69 10.15 21.09 0.21 -1.47 16 24 C -0.22 -1.67 10.93 66.83 0.73 -0.94 16 25 S 0.26 2.46 22.10 -56.49 -1.25 1.21 16 26 C -0.15 -4.40 9.73 22.68 0.22 -4.18 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.06 2.51 7.66 -2.39 -0.02 2.49 16 31 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 32 H 0.13 3.62 6.28 -2.91 -0.02 3.60 16 33 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.16 1.75 6.16 -2.91 -0.02 1.73 16 35 H 0.13 2.94 7.52 -2.91 -0.02 2.92 16 36 H 0.16 1.85 5.42 -2.91 -0.02 1.83 16 37 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.20 0.27 8.06 -2.91 -0.02 0.24 16 40 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -72.36 364.88 5.13 -67.23 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.06 Total: 9.83 kcal Atomic # 6 Polarization: -41.50 SS G_CDS: 4.03 Total: -37.47 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.28 Total: -56.37 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.02 Total: -29.56 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.25 Total: 1.21 kcal Total: -72.36 5.13 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.148 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds