Wall clock time and date at job start Tue Mar 31 2020 15:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38252 * 119.99895 * 2 1 4 4 C 1.38221 * 119.99743 * 179.97438 * 3 2 1 5 5 N 1.48018 * 119.99535 * 179.97438 * 4 3 2 6 6 O 1.21794 * 120.00519 * 0.02562 * 5 4 3 7 7 O 1.21809 * 119.99466 * 180.02562 * 5 4 3 8 8 C 1.38259 * 119.99905 * 359.76939 * 4 3 2 9 9 C 1.38213 * 119.99743 * 0.46931 * 8 4 3 10 10 C 1.38211 * 119.99973 * 179.97438 * 2 1 3 11 11 S 1.76207 * 120.00065 * 359.97438 * 10 2 1 12 12 O 1.42100 * 106.40143 * 47.57951 * 11 10 2 13 13 O 1.42094 * 106.40324 * 180.50232 * 11 10 2 14 14 N 1.65597 * 107.21714 * 294.04202 * 11 10 2 15 15 C 1.46503 * 120.00370 * 277.80089 * 14 11 10 16 16 C 1.46499 * 120.00224 * 97.80224 * 14 11 10 17 17 H 1.09001 * 109.47154 * 353.29228 * 16 14 11 18 18 C 1.53004 * 109.47339 * 113.28918 * 16 14 11 19 19 C 1.50696 * 109.47316 * 233.29161 * 16 14 11 20 20 H 1.07996 * 120.00171 * 359.97438 * 19 16 14 21 21 C 1.37880 * 120.00172 * 179.97438 * 19 16 14 22 22 N 1.31516 * 120.00121 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 120.00334 * 179.97438 * 21 19 16 24 24 H 1.48498 * 109.47041 * 59.99635 * 23 21 19 25 25 H 1.48496 * 109.47468 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46981 * 300.00312 * 23 21 19 27 27 H 1.09000 * 109.46826 * 271.19118 * 1 2 3 28 28 H 1.08998 * 109.46855 * 31.19220 * 1 2 3 29 29 H 1.08997 * 109.46858 * 151.18842 * 1 2 3 30 30 H 1.08001 * 120.00354 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.99797 * 180.24607 * 8 4 3 32 32 H 1.08000 * 119.99333 * 179.78992 * 9 8 4 33 33 H 1.09004 * 109.46999 * 90.00107 * 15 14 11 34 34 H 1.08999 * 109.47171 * 210.00141 * 15 14 11 35 35 H 1.09002 * 109.46467 * 330.00491 * 15 14 11 36 36 H 1.09001 * 109.46745 * 60.00059 * 18 16 14 37 37 H 1.09000 * 109.46916 * 180.02562 * 18 16 14 38 38 H 1.09000 * 109.46610 * 300.00188 * 18 16 14 39 39 H 0.97003 * 120.00508 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 7 4.3206 2.4792 0.0000 6 8 3.7116 3.5340 -0.0005 7 8 5.5386 2.4791 0.0000 8 6 4.2718 -0.0001 0.0059 9 6 3.5806 -1.1970 0.0009 10 6 2.1981 -1.1969 0.0005 11 16 1.3171 -2.7229 0.0019 12 8 0.3197 -2.6113 -1.0041 13 8 2.2969 -3.7520 0.0142 14 7 0.5145 -2.8243 1.4468 15 6 1.2180 -3.2898 2.6446 16 6 -0.8991 -2.4484 1.5275 17 1 -1.2157 -2.0188 0.5770 18 6 -1.7405 -3.6897 1.8315 19 6 -1.0871 -1.4330 2.6250 20 1 -0.2386 -1.1011 3.2048 21 6 -2.3425 -0.9276 2.8890 22 7 -3.3758 -1.3312 2.1827 23 14 -2.5757 0.3306 4.2500 24 1 -1.7585 1.5351 3.9559 25 1 -4.0084 0.7126 4.3309 26 1 -2.1452 -0.2554 5.5448 27 1 -0.3633 0.0214 1.0275 28 1 -0.3633 0.8791 -0.5322 29 1 -0.3633 -0.9004 -0.4953 30 1 1.6584 2.1326 -0.0004 31 1 5.3517 -0.0001 0.0103 32 1 4.1207 -2.1323 0.0017 33 1 1.6622 -2.4378 3.1593 34 1 0.5128 -3.7886 3.3094 35 1 2.0026 -3.9894 2.3561 36 1 -1.4239 -4.1192 2.7820 37 1 -2.7923 -3.4100 1.8910 38 1 -1.6044 -4.4240 1.0376 39 1 -4.2590 -0.9754 2.3681 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496454.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:13 Heat of formation + Delta-G solvation = -54.945720 kcal Electronic energy + Delta-G solvation = -27127.524016 eV Core-core repulsion = 23165.658860 eV Total energy + Delta-G solvation = -3961.865156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.46331 -40.78320 -38.66245 -37.97785 -37.86265 -37.05162 -34.52746 -34.44038 -33.22306 -30.95754 -28.52847 -28.05678 -27.14999 -27.01195 -24.17187 -23.26294 -22.61909 -20.37886 -20.05353 -19.84192 -18.96246 -18.81728 -18.51902 -18.27985 -17.39008 -16.72426 -16.21821 -15.95177 -15.40591 -15.25782 -15.08840 -14.76738 -14.61995 -14.51478 -13.99034 -13.71340 -13.48848 -13.40097 -13.11525 -12.94933 -12.88491 -12.82419 -12.76569 -12.65507 -12.61706 -12.59395 -12.43628 -12.24221 -12.17853 -11.91205 -11.78911 -11.22231 -11.00726 -10.47274 -10.25995 -9.70637 -8.08064 -6.19506 -1.65664 -0.72213 -0.26065 -0.10492 0.09633 1.45937 1.50626 1.53979 1.71586 2.03937 2.45559 2.57704 3.00856 3.21258 3.21714 3.29068 3.62244 3.76886 3.95300 4.11871 4.15047 4.34885 4.42034 4.54256 4.73469 4.76439 4.81134 4.86537 4.99158 5.01976 5.06162 5.18884 5.20008 5.21176 5.43883 5.64168 5.72499 5.87620 6.10311 6.31623 6.32700 6.87867 7.48072 8.95594 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.005446 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.753668 B = 5139.763386 C = 6679.533526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.038 3.962 3 C -0.087 4.087 4 C -0.001 4.001 5 N 0.024 4.976 6 O -0.179 6.179 7 O -0.143 6.143 8 C -0.082 4.082 9 C -0.012 4.012 10 C -0.647 4.647 11 S 2.695 3.305 12 O -0.976 6.976 13 O -0.970 6.970 14 N -0.980 5.980 15 C 0.089 3.911 16 C 0.262 3.738 17 H 0.054 0.946 18 C -0.146 4.146 19 C -0.521 4.521 20 H 0.068 0.932 21 C 0.032 3.968 22 N -0.906 5.906 23 Si 0.940 3.060 24 H -0.273 1.273 25 H -0.292 1.292 26 H -0.275 1.275 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.168 0.832 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.021 0.979 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 0.217 -1.880 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.036 3.964 3 C -0.107 4.107 4 C -0.084 4.084 5 N 0.544 4.456 6 O -0.390 6.390 7 O -0.364 6.364 8 C -0.101 4.101 9 C -0.031 4.031 10 C -0.733 4.733 11 S 2.785 3.215 12 O -0.966 6.966 13 O -0.960 6.960 14 N -0.821 5.821 15 C -0.056 4.056 16 C 0.159 3.841 17 H 0.071 0.929 18 C -0.206 4.206 19 C -0.561 4.561 20 H 0.086 0.914 21 C -0.169 4.169 22 N -0.545 5.545 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.201 1.201 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.186 0.814 31 H 0.207 0.793 32 H 0.207 0.793 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.201 -0.953 -2.560 11.529 hybrid contribution -0.223 1.861 0.983 2.116 sum 10.978 0.908 -1.577 11.128 Atomic orbital electron populations 1.22153 0.88342 1.06788 1.07556 1.19679 0.97196 0.90359 0.89209 1.21168 0.91310 1.00770 0.97459 1.21521 0.92711 0.83770 1.10383 1.43813 1.01264 1.03125 0.97394 1.94567 1.70103 1.20046 1.54270 1.94509 0.95610 1.94251 1.52032 1.21407 1.03486 0.88618 0.96619 1.21322 0.90924 0.99988 0.90901 1.31557 1.07449 1.20997 1.13269 1.01810 0.72666 0.73625 0.73361 1.93509 1.58602 1.86798 1.57690 1.93505 1.61827 1.53742 1.86949 1.57265 1.20580 1.79406 1.24817 1.21566 0.97079 0.99593 0.87352 1.18821 0.74172 0.92982 0.98167 0.92878 1.22041 1.03001 0.96965 0.98577 1.21420 0.93733 1.23133 1.17775 0.91385 1.25433 0.95890 0.97969 0.97647 1.69962 0.99960 1.43794 1.40777 0.85897 0.76764 0.80102 0.80549 1.19835 1.21771 1.20067 0.86282 0.88546 0.88415 0.81409 0.79315 0.79298 0.92414 0.90104 0.89758 0.93812 0.90865 0.96036 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.44 8.19 71.24 0.58 -5.86 16 2 C 0.04 1.12 5.87 -19.86 -0.12 1.00 16 3 C -0.09 -2.35 9.22 22.27 0.21 -2.15 16 4 C 0.00 -0.04 6.85 36.38 0.25 0.21 16 5 N 0.02 0.67 4.45 -46.46 -0.21 0.46 16 6 O -0.18 -5.29 18.45 18.89 0.35 -4.94 16 7 O -0.14 -3.79 18.45 18.87 0.35 -3.44 16 8 C -0.08 -1.70 9.56 22.27 0.21 -1.49 16 9 C -0.01 -0.26 9.55 22.27 0.21 -0.05 16 10 C -0.65 -18.44 5.91 22.27 0.13 -18.31 16 11 S 2.70 89.36 5.09 -56.49 -0.29 89.07 16 12 O -0.98 -38.28 14.14 -128.00 -1.81 -40.09 16 13 O -0.97 -31.81 15.74 -128.00 -2.02 -33.82 16 14 N -0.98 -34.15 3.04 -520.43 -1.58 -35.73 16 15 C 0.09 2.56 9.66 127.77 1.23 3.79 16 16 C 0.26 11.00 1.62 44.25 0.07 11.08 16 17 H 0.05 2.45 4.80 -2.39 -0.01 2.44 16 18 C -0.15 -6.21 9.05 71.98 0.65 -5.56 16 19 C -0.52 -22.96 6.02 25.60 0.15 -22.80 16 20 H 0.07 2.90 7.28 -2.91 -0.02 2.88 16 21 C 0.03 1.49 5.30 84.65 0.45 1.94 16 22 N -0.91 -45.19 11.32 21.45 0.24 -44.95 16 23 Si 0.94 38.15 29.54 68.60 2.03 40.18 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 27 H 0.12 4.45 5.30 -2.39 -0.01 4.44 16 28 H 0.10 2.77 8.09 -2.39 -0.02 2.75 16 29 H 0.10 3.66 3.32 -2.39 -0.01 3.65 16 30 H 0.17 4.10 7.61 -2.91 -0.02 4.08 16 31 H 0.19 2.73 7.61 -2.91 -0.02 2.70 16 32 H 0.19 3.18 7.33 -2.91 -0.02 3.16 16 33 H 0.06 1.51 7.98 -2.38 -0.02 1.49 16 34 H 0.08 2.36 6.80 -2.39 -0.02 2.34 16 35 H 0.08 2.06 7.11 -2.39 -0.02 2.04 16 36 H 0.04 1.72 6.95 -2.39 -0.02 1.71 16 37 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.26 12.82 8.31 -92.71 -0.77 12.05 16 Total: -1.00 -55.59 331.07 2.21 -53.38 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.11 Total: 18.10 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 4.04 Total: -38.20 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.54 Total: -80.23 kcal Atomic # 8 Polarization: -79.17 SS G_CDS: -3.13 Total: -82.30 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 89.36 SS G_CDS: -0.29 Total: 89.07 kcal Total: -55.59 2.21 -53.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496454.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.570 kcal (2) G-P(sol) polarization free energy of solvation -55.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds