Wall clock time and date at job start Tue Mar 31 2020 16:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47560 * 239.99985 * 2 1 3 5 5 S 1.65598 * 119.99794 * 94.99716 * 4 2 1 6 6 O 1.42098 * 104.27728 * 181.07372 * 5 4 2 7 7 O 1.42099 * 104.28048 * 308.92958 * 5 4 2 8 8 C 1.81404 * 104.45180 * 65.00240 * 5 4 2 9 9 C 1.53003 * 109.47290 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.46826 * 180.02562 * 9 8 5 11 11 H 1.08000 * 120.00440 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99557 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00047 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99777 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46951 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47390 * 119.99695 * 14 12 10 17 17 H 1.48504 * 109.47014 * 239.99736 * 14 12 10 18 18 C 1.50697 * 109.47417 * 119.99658 * 2 1 3 19 19 C 1.38265 * 119.99888 * 80.00199 * 18 2 1 20 20 C 1.38208 * 120.00352 * 179.70542 * 19 18 2 21 21 C 1.38257 * 119.99910 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.00125 * 0.02562 * 21 20 19 23 23 N 1.48024 * 120.00214 * 179.97438 * 22 21 20 24 24 O 1.21799 * 119.99792 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99647 * 180.02562 * 23 22 21 26 26 C 1.38215 * 120.00726 * 259.73155 * 18 2 1 27 27 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47180 * 299.99903 * 1 2 3 29 29 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 30 30 H 0.96996 * 119.99935 * 274.99823 * 4 2 1 31 31 H 1.09001 * 109.46837 * 300.00419 * 8 5 4 32 32 H 1.09006 * 109.46556 * 59.99494 * 8 5 4 33 33 H 1.08995 * 109.46973 * 300.00208 * 9 8 5 34 34 H 1.09000 * 109.46560 * 60.00386 * 9 8 5 35 35 H 0.96997 * 120.00309 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99335 * 359.72717 * 19 18 2 37 37 H 1.07992 * 120.00457 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.00097 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99268 * 0.24980 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1772 -2.5504 6 8 2.8124 -0.8074 -3.4935 7 8 1.2751 0.9966 -2.7846 8 6 3.8313 1.1874 -2.0440 9 6 4.2942 2.0446 -3.2238 10 6 5.4735 2.8833 -2.8032 11 1 5.8550 2.8118 -1.7954 12 6 6.0654 3.7420 -3.7051 13 7 5.6011 3.8287 -4.9325 14 14 7.5276 4.7811 -3.1840 15 1 7.8533 4.4997 -1.7627 16 1 8.6983 4.4505 -4.0355 17 1 7.1930 6.2196 -3.3393 18 6 2.0324 -0.7103 1.2305 19 6 2.0669 -2.0921 1.2654 20 6 2.5333 -2.7435 2.3915 21 6 2.9660 -2.0135 3.4830 22 6 2.9315 -0.6322 3.4482 23 7 3.3942 0.1494 4.6170 24 8 3.8058 -0.4247 5.6092 25 8 3.3634 1.3667 4.5863 26 6 2.4640 0.0194 2.3220 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.1111 -1.6561 -1.1948 31 1 3.5399 1.8343 -1.2165 32 1 4.6459 0.5363 -1.7266 33 1 4.5856 1.3973 -4.0509 34 1 3.4797 2.6956 -3.5414 35 1 6.0172 4.4330 -5.5669 36 1 1.7296 -2.6623 0.4124 37 1 2.5606 -3.8228 2.4186 38 1 3.3309 -2.5225 4.3628 39 1 2.4374 1.0988 2.2946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111330740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:21 Heat of formation + Delta-G solvation = -60.633388 kcal Electronic energy + Delta-G solvation = -25477.289841 eV Core-core repulsion = 21515.178050 eV Total energy + Delta-G solvation = -3962.111792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -42.41711 -40.25248 -36.95876 -36.77688 -36.42905 -35.57349 -33.97021 -32.32125 -31.78572 -31.24493 -29.46449 -26.89951 -25.68741 -24.37615 -23.16528 -21.76132 -21.62602 -19.32389 -19.24549 -18.80922 -17.75181 -17.74698 -17.06167 -16.64441 -16.43307 -15.59128 -15.52085 -15.09377 -14.78844 -14.58041 -14.24899 -14.07795 -13.50968 -13.29338 -12.88538 -12.59271 -12.54950 -12.31347 -11.88397 -11.80471 -11.76421 -11.74277 -11.65390 -11.44103 -11.34870 -11.27005 -11.12695 -11.02054 -10.49535 -10.46322 -10.05318 -10.03774 -9.74112 -9.60280 -9.15346 -8.55332 -6.17423 -4.23267 -0.48736 0.40969 0.63605 1.02854 1.11929 2.75106 2.97252 3.23042 3.30871 3.34240 3.73969 3.98264 4.11415 4.24504 4.33381 4.36478 4.44170 4.46661 4.57384 4.85085 4.89392 5.00296 5.11459 5.18222 5.26866 5.41747 5.48572 5.51714 5.55826 5.61387 5.78965 5.91017 6.02458 6.15110 6.37697 6.79571 7.22356 7.27854 7.38987 7.75680 8.11224 8.80368 9.42259 10.93555 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.003727 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.542883 B = 7511.561608 C = 9480.003014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.192 3.808 3 H 0.102 0.898 4 N -1.123 6.123 5 S 2.590 3.410 6 O -0.963 6.963 7 O -0.960 6.960 8 C -0.590 4.590 9 C 0.028 3.972 10 C -0.521 4.521 11 H 0.062 0.938 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.281 1.281 18 C -0.082 4.082 19 C -0.058 4.058 20 C -0.113 4.113 21 C -0.058 4.058 22 C -0.040 4.040 23 N 0.028 4.972 24 O -0.163 6.163 25 O -0.154 6.154 26 C -0.047 4.047 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.411 0.589 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -14.019 15.447 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.084 3.916 3 H 0.120 0.880 4 N -0.880 5.880 5 S 2.687 3.313 6 O -0.954 6.954 7 O -0.950 6.950 8 C -0.723 4.723 9 C -0.011 4.011 10 C -0.561 4.561 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.207 1.207 18 C -0.085 4.085 19 C -0.077 4.077 20 C -0.132 4.132 21 C -0.077 4.077 22 C -0.123 4.123 23 N 0.547 4.453 24 O -0.378 6.378 25 O -0.371 6.371 26 C -0.066 4.066 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.245 0.755 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.283 -14.195 13.869 22.352 hybrid contribution 1.505 0.514 1.085 1.925 sum -8.778 -13.682 14.954 22.088 Atomic orbital electron populations 1.22353 0.93064 1.03177 1.04096 1.19624 0.95299 0.95540 0.81098 0.87963 1.56119 1.82818 1.19323 1.29703 1.05748 0.77305 0.75136 0.73075 1.93565 1.84639 1.58611 1.58562 1.93555 1.47978 1.70130 1.83330 1.30465 1.16718 1.13373 1.11751 1.18973 0.98304 0.94232 0.89569 1.21022 1.13946 1.23048 0.98058 0.91998 1.25059 0.97524 0.96947 0.94864 1.69953 1.41131 1.37500 1.04183 0.86420 0.82103 0.80057 0.78774 1.19610 1.20773 1.20709 1.20069 0.99099 0.94008 0.95307 1.21462 0.94101 0.93925 0.98190 1.21212 0.98814 1.01096 0.92029 1.21107 0.95476 0.90785 1.00314 1.21087 1.10553 0.92127 0.88533 1.43623 0.98251 1.01427 1.01952 1.94534 1.47922 1.72753 1.22566 1.94581 1.58785 0.95394 1.88338 1.20967 0.93200 1.02500 0.89975 0.91878 0.91296 0.89534 0.75476 0.86355 0.86057 0.94812 0.94713 0.92526 0.83847 0.83292 0.82904 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.50 37.16 0.35 -1.06 16 2 C 0.19 1.74 2.88 -69.08 -0.20 1.54 16 3 H 0.10 0.90 7.01 -51.93 -0.36 0.54 16 4 N -1.12 -11.72 5.31 -5.88 -0.03 -11.76 16 5 S 2.59 41.24 5.38 -107.50 -0.58 40.66 16 6 O -0.96 -18.38 18.08 -57.54 -1.04 -19.42 16 7 O -0.96 -17.76 17.11 -57.54 -0.98 -18.74 16 8 C -0.59 -10.44 5.90 37.16 0.22 -10.22 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 10 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 11 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 14 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.08 -0.64 4.95 -104.62 -0.52 -1.16 16 19 C -0.06 -0.35 9.15 -39.58 -0.36 -0.71 16 20 C -0.11 -0.60 10.05 -39.59 -0.40 -0.99 16 21 C -0.06 -0.41 9.56 -39.58 -0.38 -0.79 16 22 C -0.04 -0.39 6.85 -79.95 -0.55 -0.94 16 23 N 0.03 0.34 4.45 33.96 0.15 0.49 16 24 O -0.16 -2.06 18.45 -29.46 -0.54 -2.61 16 25 O -0.15 -2.08 18.45 -29.46 -0.54 -2.62 16 26 C -0.05 -0.41 9.18 -39.58 -0.36 -0.78 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.90 7.42 -51.93 -0.39 0.52 16 30 H 0.41 3.29 7.05 -34.47 -0.24 3.05 16 31 H 0.12 1.83 7.44 -51.92 -0.39 1.44 16 32 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 33 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 0.56 6.83 -52.49 -0.36 0.20 16 37 H 0.15 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.15 0.89 7.61 -52.49 -0.40 0.49 16 39 H 0.16 1.31 7.59 -52.49 -0.40 0.91 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -35.78 354.71 -9.87 -45.64 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.61 Total: -0.29 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -2.74 Total: -27.42 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.86 Total: -36.55 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -3.11 Total: -43.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 41.24 SS G_CDS: -0.58 Total: 40.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.78 -9.87 -45.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111330740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.991 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds