Wall clock time and date at job start Tue Mar 31 2020 16:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47031 * 2 1 4 4 N 1.46500 * 109.47560 * 239.99985 * 2 1 3 5 5 S 1.65598 * 119.99794 * 94.99716 * 4 2 1 6 6 O 1.42098 * 104.27728 * 181.07372 * 5 4 2 7 7 O 1.42099 * 104.28048 * 308.92958 * 5 4 2 8 8 C 1.81404 * 104.45180 * 65.00240 * 5 4 2 9 9 C 1.53003 * 109.47290 * 179.97438 * 8 5 4 10 10 C 1.50700 * 109.46826 * 180.02562 * 9 8 5 11 11 H 1.08000 * 120.00440 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99557 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00047 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99777 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46951 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47390 * 119.99695 * 14 12 10 17 17 H 1.48504 * 109.47014 * 239.99736 * 14 12 10 18 18 C 1.50697 * 109.47417 * 119.99658 * 2 1 3 19 19 C 1.38265 * 119.99888 * 80.00199 * 18 2 1 20 20 C 1.38208 * 120.00352 * 179.70542 * 19 18 2 21 21 C 1.38257 * 119.99910 * 359.97438 * 20 19 18 22 22 C 1.38215 * 120.00125 * 0.02562 * 21 20 19 23 23 N 1.48024 * 120.00214 * 179.97438 * 22 21 20 24 24 O 1.21799 * 119.99792 * 0.02562 * 23 22 21 25 25 O 1.21803 * 119.99647 * 180.02562 * 23 22 21 26 26 C 1.38215 * 120.00726 * 259.73155 * 18 2 1 27 27 H 1.09002 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47180 * 299.99903 * 1 2 3 29 29 H 1.09003 * 109.47132 * 60.00239 * 1 2 3 30 30 H 0.96996 * 119.99935 * 274.99823 * 4 2 1 31 31 H 1.09001 * 109.46837 * 300.00419 * 8 5 4 32 32 H 1.09006 * 109.46556 * 59.99494 * 8 5 4 33 33 H 1.08995 * 109.46973 * 300.00208 * 9 8 5 34 34 H 1.09000 * 109.46560 * 60.00386 * 9 8 5 35 35 H 0.96997 * 120.00309 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99335 * 359.72717 * 19 18 2 37 37 H 1.07992 * 120.00457 * 180.02562 * 20 19 18 38 38 H 1.08000 * 120.00097 * 180.02562 * 21 20 19 39 39 H 1.08001 * 119.99268 * 0.24980 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 2.4122 0.1772 -2.5504 6 8 2.8124 -0.8074 -3.4935 7 8 1.2751 0.9966 -2.7846 8 6 3.8313 1.1874 -2.0440 9 6 4.2942 2.0446 -3.2238 10 6 5.4735 2.8833 -2.8032 11 1 5.8550 2.8118 -1.7954 12 6 6.0654 3.7420 -3.7051 13 7 5.6011 3.8287 -4.9325 14 14 7.5276 4.7811 -3.1840 15 1 7.8533 4.4997 -1.7627 16 1 8.6983 4.4505 -4.0355 17 1 7.1930 6.2196 -3.3393 18 6 2.0324 -0.7103 1.2305 19 6 2.0669 -2.0921 1.2654 20 6 2.5333 -2.7435 2.3915 21 6 2.9660 -2.0135 3.4830 22 6 2.9315 -0.6322 3.4482 23 7 3.3942 0.1494 4.6170 24 8 3.8058 -0.4247 5.6092 25 8 3.3634 1.3667 4.5863 26 6 2.4640 0.0194 2.3220 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.1111 -1.6561 -1.1948 31 1 3.5399 1.8343 -1.2165 32 1 4.6459 0.5363 -1.7266 33 1 4.5856 1.3973 -4.0509 34 1 3.4797 2.6956 -3.5414 35 1 6.0172 4.4330 -5.5669 36 1 1.7296 -2.6623 0.4124 37 1 2.5606 -3.8228 2.4186 38 1 3.3309 -2.5225 4.3628 39 1 2.4374 1.0988 2.2946 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111330740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:16 Heat of formation + Delta-G solvation = -85.521784 kcal Electronic energy + Delta-G solvation = -25478.369083 eV Core-core repulsion = 21515.178050 eV Total energy + Delta-G solvation = -3963.191034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -43.26321 -40.87824 -38.22937 -37.70896 -37.36488 -36.98167 -35.90825 -33.14525 -32.90465 -32.53580 -30.17019 -27.70231 -27.58112 -25.04239 -23.87737 -23.51273 -22.38039 -20.42959 -20.08149 -19.73465 -19.15951 -18.61069 -18.39244 -17.60510 -17.33952 -17.02235 -16.56208 -16.47184 -16.09420 -15.42171 -15.13590 -14.87356 -14.72603 -14.47991 -14.06088 -13.74768 -13.50094 -13.23842 -13.20540 -13.13477 -13.01552 -12.97339 -12.81133 -12.71829 -12.65472 -12.32447 -12.29425 -12.26904 -12.15398 -11.97305 -11.76444 -11.26218 -10.66704 -10.64364 -10.57353 -10.20973 -8.27860 -6.41130 -1.26188 -0.73613 -0.09358 0.28360 0.36695 1.39367 1.40086 1.52783 1.76681 2.27572 2.36277 2.75736 3.06090 3.13909 3.24309 3.46945 3.69908 3.80456 3.84153 3.91783 3.98604 4.07678 4.21706 4.24903 4.35248 4.60737 4.71344 4.74960 4.88066 4.89871 5.00102 5.10868 5.23784 5.26915 5.28684 5.34892 5.48431 5.67430 6.03872 6.06076 6.43656 6.72760 7.29263 8.84409 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.003727 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.542883 B = 7511.561608 C = 9480.003014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.101 0.899 4 N -1.101 6.101 5 S 2.624 3.376 6 O -0.994 6.994 7 O -0.986 6.986 8 C -0.595 4.595 9 C 0.020 3.980 10 C -0.538 4.538 11 H 0.072 0.928 12 C -0.001 4.001 13 N -0.932 5.932 14 Si 0.969 3.031 15 H -0.259 1.259 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.085 4.085 19 C -0.050 4.050 20 C -0.098 4.098 21 C -0.055 4.055 22 C -0.061 4.061 23 N 0.030 4.970 24 O -0.168 6.168 25 O -0.198 6.198 26 C -0.056 4.056 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.427 0.573 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.007 0.993 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.172 0.828 37 H 0.188 0.812 38 H 0.166 0.834 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.619 -16.270 16.943 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.078 3.922 3 H 0.119 0.881 4 N -0.862 5.862 5 S 2.720 3.280 6 O -0.984 6.984 7 O -0.976 6.976 8 C -0.726 4.726 9 C -0.019 4.019 10 C -0.577 4.577 11 H 0.090 0.910 12 C -0.199 4.199 13 N -0.572 5.572 14 Si 0.793 3.207 15 H -0.183 1.183 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.087 4.087 19 C -0.068 4.068 20 C -0.116 4.116 21 C -0.074 4.074 22 C -0.144 4.144 23 N 0.544 4.456 24 O -0.385 6.385 25 O -0.407 6.407 26 C -0.075 4.075 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.265 0.735 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.189 0.811 37 H 0.205 0.795 38 H 0.184 0.816 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.320 -16.389 15.371 24.726 hybrid contribution 1.433 1.046 0.645 1.887 sum -8.887 -15.344 16.016 23.894 Atomic orbital electron populations 1.22352 0.92316 1.04354 1.03694 1.19795 0.95938 0.95685 0.80750 0.88077 1.55525 1.82017 1.19841 1.28859 1.04425 0.75984 0.74284 0.73317 1.93519 1.84931 1.59300 1.60688 1.93526 1.48556 1.71248 1.84259 1.30403 1.18816 1.13767 1.09648 1.18812 0.97158 0.94342 0.91551 1.21531 1.14559 1.23125 0.98508 0.90955 1.26041 1.00603 0.98442 0.94848 1.70085 1.42905 1.38656 1.05512 0.85335 0.78334 0.78133 0.78896 1.18302 1.20326 1.20304 1.19876 0.99901 0.94796 0.94163 1.21864 0.92510 0.93133 0.99278 1.21633 0.96739 1.02754 0.90512 1.21456 0.94746 0.89670 1.01549 1.21267 1.12522 0.92892 0.87735 1.44024 0.97662 1.01377 1.02545 1.94495 1.47882 1.72540 1.23591 1.94571 1.60677 0.96476 1.88957 1.20995 0.93620 1.02623 0.90302 0.89964 0.89865 0.91794 0.73469 0.84188 0.84186 0.97433 0.97199 0.92371 0.81104 0.79491 0.81619 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.50 71.98 0.68 -1.75 16 2 C 0.19 2.92 2.88 44.24 0.13 3.04 16 3 H 0.10 1.63 7.01 -2.38 -0.02 1.62 16 4 N -1.10 -20.16 5.31 -172.52 -0.92 -21.08 16 5 S 2.62 81.64 5.38 -56.49 -0.30 81.34 16 6 O -0.99 -37.34 18.08 -127.65 -2.31 -39.65 16 7 O -0.99 -36.41 17.11 -127.65 -2.18 -38.60 16 8 C -0.59 -20.80 5.90 71.98 0.42 -20.37 16 9 C 0.02 1.02 4.98 29.85 0.15 1.17 16 10 C -0.54 -29.36 9.11 25.60 0.23 -29.13 16 11 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 13 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 14 Si 0.97 43.22 29.54 68.60 2.03 45.24 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 C -0.08 -1.07 4.95 -19.86 -0.10 -1.17 16 19 C -0.05 -0.36 9.15 22.27 0.20 -0.16 16 20 C -0.10 -0.56 10.05 22.27 0.22 -0.33 16 21 C -0.06 -0.61 9.56 22.27 0.21 -0.40 16 22 C -0.06 -1.09 6.85 36.37 0.25 -0.84 16 23 N 0.03 0.73 4.45 -46.46 -0.21 0.52 16 24 O -0.17 -4.20 18.45 18.89 0.35 -3.85 16 25 O -0.20 -5.56 18.45 18.88 0.35 -5.21 16 26 C -0.06 -0.90 9.18 22.27 0.20 -0.70 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 1.25 7.42 -2.39 -0.02 1.24 16 30 H 0.43 5.23 7.05 -96.75 -0.68 4.55 16 31 H 0.14 4.20 7.44 -2.39 -0.02 4.18 16 32 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.17 0.34 6.83 -2.91 -0.02 0.32 16 37 H 0.19 -0.28 8.06 -2.91 -0.02 -0.31 16 38 H 0.17 1.40 7.61 -2.91 -0.02 1.38 16 39 H 0.15 2.53 7.59 -2.91 -0.02 2.51 16 Total: -1.00 -80.42 354.71 0.57 -79.84 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.41 Total: 7.32 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 3.07 Total: -50.22 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -0.84 Total: -76.22 kcal Atomic # 8 Polarization: -83.51 SS G_CDS: -3.79 Total: -87.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 81.64 SS G_CDS: -0.30 Total: 81.34 kcal Total: -80.42 0.57 -79.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111330740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.678 kcal (2) G-P(sol) polarization free energy of solvation -80.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds