Wall clock time and date at job start Tue Mar 31 2020 16:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 N 1.46506 * 109.46824 * 119.99357 * 2 1 3 5 5 S 1.65597 * 120.00079 * 264.72374 * 4 2 1 6 6 O 1.42094 * 104.27779 * 181.07288 * 5 4 2 7 7 O 1.42104 * 104.27939 * 308.93259 * 5 4 2 8 8 C 1.81403 * 104.44731 * 65.00319 * 5 4 2 9 9 C 1.53001 * 109.47061 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.47097 * 179.97438 * 9 8 5 11 11 H 1.07999 * 119.99837 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99820 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99864 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47387 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47591 * 119.99996 * 14 12 10 17 17 H 1.48503 * 109.47138 * 239.99861 * 14 12 10 18 18 C 1.50696 * 109.47515 * 239.99424 * 2 1 3 19 19 C 1.38256 * 120.00203 * 279.73224 * 18 2 1 20 20 C 1.38208 * 120.00101 * 179.76726 * 19 18 2 21 21 C 1.38260 * 120.00096 * 0.49909 * 20 19 18 22 22 C 1.38217 * 119.99888 * 359.75032 * 21 20 19 23 23 N 1.48016 * 119.99881 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99342 * 180.02562 * 23 22 21 25 25 O 1.21794 * 120.00302 * 0.02562 * 23 22 21 26 26 C 1.38218 * 119.99880 * 99.99659 * 18 2 1 27 27 H 1.09002 * 109.46959 * 60.00596 * 1 2 3 28 28 H 1.09003 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47311 * 300.00311 * 1 2 3 30 30 H 0.97005 * 119.99811 * 85.00353 * 4 2 1 31 31 H 1.09003 * 109.46906 * 299.99935 * 8 5 4 32 32 H 1.09000 * 109.47298 * 59.99821 * 8 5 4 33 33 H 1.09003 * 109.47261 * 300.00372 * 9 8 5 34 34 H 1.09000 * 109.47101 * 59.99835 * 9 8 5 35 35 H 0.97002 * 119.99943 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.99618 * 359.97438 * 19 18 2 37 37 H 1.07998 * 120.00360 * 180.23017 * 20 19 18 38 38 H 1.07997 * 120.00151 * 179.73383 * 21 20 19 39 39 H 1.08000 * 119.99738 * 0.02562 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4185 0.1780 2.5482 6 8 2.8652 -0.8022 3.4750 7 8 3.2967 1.1873 2.0692 8 6 0.8511 0.9068 3.0985 9 6 1.0916 1.7431 4.3570 10 6 -0.2104 2.3491 4.8137 11 1 -1.1186 2.1566 4.2619 12 6 -0.2421 3.1492 5.9361 13 7 0.8637 3.3832 6.6084 14 14 -1.8561 3.8997 6.5028 15 1 -2.9450 3.4857 5.5817 16 1 -2.1648 3.4304 7.8774 17 1 -1.7418 5.3804 6.4993 18 6 2.0324 -0.7105 -1.2303 19 6 2.0720 -2.0921 -1.2630 20 6 2.5283 -2.7438 -2.3932 21 6 2.9548 -2.0139 -3.4873 22 6 2.9200 -0.6326 -3.4527 23 7 3.3771 0.1487 -4.6238 24 8 3.3468 1.3660 -4.5930 25 8 3.7835 -0.4255 -5.6180 26 6 2.4587 0.0192 -2.3241 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.1109 -1.6561 1.1951 31 1 0.4498 1.5434 2.3099 32 1 0.1393 0.1120 3.3214 33 1 1.4928 1.1062 5.1454 34 1 1.8036 2.5379 4.1345 35 1 0.8413 3.9459 7.3983 36 1 1.7433 -2.6621 -0.4066 37 1 2.5558 -3.8231 -2.4202 38 1 3.3154 -2.5231 -4.3688 39 1 2.4321 1.0985 -2.2967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111330741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:31 Heat of formation + Delta-G solvation = -60.608049 kcal Electronic energy + Delta-G solvation = -25261.316580 eV Core-core repulsion = 21299.205887 eV Total energy + Delta-G solvation = -3962.110693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.44767 -40.26127 -36.95734 -36.80232 -36.47355 -35.58824 -33.99719 -32.33462 -31.79671 -31.29670 -29.47434 -26.91673 -25.72484 -24.39017 -23.16782 -21.81341 -21.56672 -19.35357 -19.26871 -18.84400 -17.78515 -17.77810 -17.08301 -16.64550 -16.41152 -15.65529 -15.55041 -15.08022 -14.77494 -14.62045 -14.22852 -14.14505 -13.57325 -13.26707 -12.93185 -12.65655 -12.50925 -12.37042 -11.86412 -11.83465 -11.79518 -11.74839 -11.64317 -11.46550 -11.38331 -11.34408 -11.15150 -10.99834 -10.50348 -10.47483 -10.08146 -10.03924 -9.73048 -9.59948 -9.18406 -8.57216 -6.19127 -4.25179 -0.50538 0.39734 0.63989 1.01028 1.09600 2.75310 2.95960 3.20722 3.28397 3.30982 3.74172 3.97682 4.08612 4.25019 4.31239 4.35044 4.44885 4.51449 4.55154 4.81008 4.90509 4.97405 5.12665 5.16388 5.25680 5.35512 5.41360 5.49783 5.54448 5.60939 5.77194 5.86059 5.92386 6.12871 6.38324 6.79574 7.21445 7.26888 7.36353 7.73552 8.09283 8.78447 9.40227 10.91874 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.002655 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.510019 B =10543.636239 C =10971.867337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.185 3.815 3 H 0.111 0.889 4 N -1.123 6.123 5 S 2.588 3.412 6 O -0.963 6.963 7 O -0.963 6.963 8 C -0.588 4.588 9 C 0.027 3.973 10 C -0.521 4.521 11 H 0.062 0.938 12 C 0.058 3.942 13 N -0.889 5.889 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.077 4.077 19 C -0.059 4.059 20 C -0.113 4.113 21 C -0.058 4.058 22 C -0.042 4.042 23 N 0.028 4.972 24 O -0.155 6.155 25 O -0.163 6.163 26 C -0.046 4.046 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.411 0.589 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -13.138 -18.777 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.078 3.922 3 H 0.128 0.872 4 N -0.880 5.880 5 S 2.686 3.314 6 O -0.954 6.954 7 O -0.953 6.953 8 C -0.722 4.722 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.527 5.527 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.079 4.079 19 C -0.078 4.078 20 C -0.132 4.132 21 C -0.078 4.078 22 C -0.124 4.124 23 N 0.548 4.452 24 O -0.372 6.372 25 O -0.378 6.378 26 C -0.065 4.065 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.558 -13.176 -17.715 22.085 hybrid contribution -1.317 0.249 -0.061 1.342 sum -0.760 -12.928 -17.776 21.993 Atomic orbital electron populations 1.22508 0.93316 1.03689 1.04140 1.19705 0.94604 0.96535 0.81392 0.87159 1.56079 1.84432 1.19601 1.27851 1.05776 0.78376 0.74482 0.72788 1.93565 1.80546 1.59365 1.61888 1.93559 1.62266 1.60261 1.79204 1.30542 1.18534 1.11829 1.11274 1.18982 0.99677 0.94325 0.88179 1.21011 0.93436 1.30367 1.11213 0.91954 1.25071 0.96801 0.96228 0.96381 1.69961 1.26810 1.37683 1.18282 0.86415 0.83171 0.79034 0.78663 1.19644 1.20791 1.20758 1.19974 0.98948 0.93901 0.95087 1.21475 0.94106 0.93947 0.98231 1.21213 0.98911 1.01095 0.91979 1.21099 0.95548 0.90767 1.00338 1.21088 1.10816 0.92128 0.88401 1.43619 0.98203 1.01416 1.01971 1.94574 1.58698 0.95431 1.88494 1.94531 1.48089 1.72750 1.22441 1.20970 0.93132 1.02515 0.89905 0.90826 0.91354 0.90097 0.75481 0.86044 0.85850 0.94809 0.94756 0.92511 0.83805 0.83277 0.82912 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.47 37.16 0.35 -0.98 16 2 C 0.19 1.68 3.01 -69.08 -0.21 1.47 16 3 H 0.11 1.06 7.34 -51.93 -0.38 0.68 16 4 N -1.12 -11.77 5.31 -5.88 -0.03 -11.80 16 5 S 2.59 41.46 5.44 -107.50 -0.58 40.87 16 6 O -0.96 -18.43 18.08 -57.54 -1.04 -19.47 16 7 O -0.96 -18.51 17.39 -57.54 -1.00 -19.51 16 8 C -0.59 -10.04 5.17 37.16 0.19 -9.84 16 9 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 10 C -0.52 -13.74 9.11 -34.44 -0.31 -14.05 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 14 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.08 -0.62 4.96 -104.62 -0.52 -1.14 16 19 C -0.06 -0.36 9.16 -39.59 -0.36 -0.72 16 20 C -0.11 -0.60 10.05 -39.58 -0.40 -0.99 16 21 C -0.06 -0.41 9.56 -39.58 -0.38 -0.79 16 22 C -0.04 -0.40 6.85 -79.95 -0.55 -0.94 16 23 N 0.03 0.34 4.45 33.96 0.15 0.49 16 24 O -0.15 -2.03 18.45 -29.46 -0.54 -2.57 16 25 O -0.16 -2.01 18.45 -29.46 -0.54 -2.55 16 26 C -0.05 -0.41 9.18 -39.58 -0.36 -0.77 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.67 5.82 -51.93 -0.30 0.37 16 30 H 0.41 3.29 7.03 -34.47 -0.24 3.05 16 31 H 0.12 1.79 6.80 -51.92 -0.35 1.44 16 32 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 33 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.14 0.56 6.80 -52.49 -0.36 0.21 16 37 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.15 0.86 7.61 -52.49 -0.40 0.46 16 39 H 0.16 1.34 7.59 -52.49 -0.40 0.94 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -35.79 352.47 -9.86 -45.65 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.51 Total: -0.16 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -2.78 Total: -26.76 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.86 Total: -36.37 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -3.13 Total: -44.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 41.46 SS G_CDS: -0.58 Total: 40.87 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.79 -9.86 -45.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111330741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.959 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds