Wall clock time and date at job start Tue Mar 31 2020 16:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 N 1.46506 * 109.46824 * 119.99357 * 2 1 3 5 5 S 1.65597 * 120.00079 * 264.72374 * 4 2 1 6 6 O 1.42094 * 104.27779 * 181.07288 * 5 4 2 7 7 O 1.42104 * 104.27939 * 308.93259 * 5 4 2 8 8 C 1.81403 * 104.44731 * 65.00319 * 5 4 2 9 9 C 1.53001 * 109.47061 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.47097 * 179.97438 * 9 8 5 11 11 H 1.07999 * 119.99837 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99820 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00318 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99864 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47387 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47591 * 119.99996 * 14 12 10 17 17 H 1.48503 * 109.47138 * 239.99861 * 14 12 10 18 18 C 1.50696 * 109.47515 * 239.99424 * 2 1 3 19 19 C 1.38256 * 120.00203 * 279.73224 * 18 2 1 20 20 C 1.38208 * 120.00101 * 179.76726 * 19 18 2 21 21 C 1.38260 * 120.00096 * 0.49909 * 20 19 18 22 22 C 1.38217 * 119.99888 * 359.75032 * 21 20 19 23 23 N 1.48016 * 119.99881 * 179.97438 * 22 21 20 24 24 O 1.21803 * 119.99342 * 180.02562 * 23 22 21 25 25 O 1.21794 * 120.00302 * 0.02562 * 23 22 21 26 26 C 1.38218 * 119.99880 * 99.99659 * 18 2 1 27 27 H 1.09002 * 109.46959 * 60.00596 * 1 2 3 28 28 H 1.09003 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47311 * 300.00311 * 1 2 3 30 30 H 0.97005 * 119.99811 * 85.00353 * 4 2 1 31 31 H 1.09003 * 109.46906 * 299.99935 * 8 5 4 32 32 H 1.09000 * 109.47298 * 59.99821 * 8 5 4 33 33 H 1.09003 * 109.47261 * 300.00372 * 9 8 5 34 34 H 1.09000 * 109.47101 * 59.99835 * 9 8 5 35 35 H 0.97002 * 119.99943 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.99618 * 359.97438 * 19 18 2 37 37 H 1.07998 * 120.00360 * 180.23017 * 20 19 18 38 38 H 1.07997 * 120.00151 * 179.73383 * 21 20 19 39 39 H 1.08000 * 119.99738 * 0.02562 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 16 2.4185 0.1780 2.5482 6 8 2.8652 -0.8022 3.4750 7 8 3.2967 1.1873 2.0692 8 6 0.8511 0.9068 3.0985 9 6 1.0916 1.7431 4.3570 10 6 -0.2104 2.3491 4.8137 11 1 -1.1186 2.1566 4.2619 12 6 -0.2421 3.1492 5.9361 13 7 0.8637 3.3832 6.6084 14 14 -1.8561 3.8997 6.5028 15 1 -2.9450 3.4857 5.5817 16 1 -2.1648 3.4304 7.8774 17 1 -1.7418 5.3804 6.4993 18 6 2.0324 -0.7105 -1.2303 19 6 2.0720 -2.0921 -1.2630 20 6 2.5283 -2.7438 -2.3932 21 6 2.9548 -2.0139 -3.4873 22 6 2.9200 -0.6326 -3.4527 23 7 3.3771 0.1487 -4.6238 24 8 3.3468 1.3660 -4.5930 25 8 3.7835 -0.4255 -5.6180 26 6 2.4587 0.0192 -2.3241 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 2.1109 -1.6561 1.1951 31 1 0.4498 1.5434 2.3099 32 1 0.1393 0.1120 3.3214 33 1 1.4928 1.1062 5.1454 34 1 1.8036 2.5379 4.1345 35 1 0.8413 3.9459 7.3983 36 1 1.7433 -2.6621 -0.4066 37 1 2.5558 -3.8231 -2.4202 38 1 3.3154 -2.5231 -4.3688 39 1 2.4321 1.0985 -2.2967 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111330741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:27 Heat of formation + Delta-G solvation = -85.707891 kcal Electronic energy + Delta-G solvation = -25262.404991 eV Core-core repulsion = 21299.205887 eV Total energy + Delta-G solvation = -3963.199104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.28642 -40.88476 -38.23624 -37.72924 -37.38388 -37.02199 -35.88947 -33.14846 -32.91584 -32.54077 -30.16298 -27.69889 -27.57231 -25.08477 -23.81042 -23.50653 -22.36904 -20.47193 -20.08612 -19.75999 -19.17161 -18.63753 -18.37068 -17.62231 -17.34233 -17.05513 -16.53817 -16.46398 -16.09260 -15.42060 -15.14041 -14.91387 -14.69955 -14.48690 -14.02529 -13.78358 -13.42573 -13.23673 -13.20998 -13.17340 -13.14983 -12.93894 -12.77529 -12.72045 -12.61118 -12.34303 -12.28338 -12.23803 -12.11163 -11.99505 -11.71328 -11.23181 -10.64663 -10.61648 -10.59835 -10.22246 -8.25283 -6.38626 -1.27425 -0.74071 -0.09681 0.27070 0.34750 1.42120 1.42553 1.55340 1.77075 2.26349 2.38568 2.78127 3.08351 3.09213 3.28325 3.45497 3.68357 3.82877 3.85574 3.92905 4.00344 4.10892 4.16858 4.28957 4.36606 4.59758 4.69837 4.74152 4.89267 4.89955 4.99470 5.09805 5.23981 5.27245 5.30168 5.37583 5.47598 5.70338 6.04721 6.07807 6.42723 6.76156 7.31883 8.87167 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.002655 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.510019 B =10543.636239 C =10971.867337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.180 3.820 3 H 0.098 0.902 4 N -1.101 6.101 5 S 2.616 3.384 6 O -0.995 6.995 7 O -0.999 6.999 8 C -0.586 4.586 9 C 0.018 3.982 10 C -0.534 4.534 11 H 0.079 0.921 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.972 3.028 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.083 4.083 19 C -0.051 4.051 20 C -0.099 4.099 21 C -0.055 4.055 22 C -0.062 4.062 23 N 0.030 4.970 24 O -0.199 6.199 25 O -0.165 6.165 26 C -0.058 4.058 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.427 0.573 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.266 0.734 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.168 0.832 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -15.704 -19.748 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.073 3.927 3 H 0.116 0.884 4 N -0.863 5.863 5 S 2.713 3.287 6 O -0.986 6.986 7 O -0.989 6.989 8 C -0.718 4.718 9 C -0.020 4.020 10 C -0.573 4.573 11 H 0.097 0.903 12 C -0.203 4.203 13 N -0.576 5.576 14 Si 0.796 3.204 15 H -0.177 1.177 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.086 4.086 19 C -0.070 4.070 20 C -0.117 4.117 21 C -0.075 4.075 22 C -0.145 4.145 23 N 0.544 4.456 24 O -0.408 6.408 25 O -0.383 6.383 26 C -0.078 4.078 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.265 0.735 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.075 0.925 36 H 0.191 0.809 37 H 0.206 0.794 38 H 0.185 0.815 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.534 -15.690 -18.684 24.447 hybrid contribution -0.644 0.890 0.177 1.113 sum -2.178 -14.801 -18.507 23.798 Atomic orbital electron populations 1.22528 0.91620 1.05180 1.04330 1.19861 0.95920 0.96034 0.80915 0.88352 1.55465 1.84168 1.20160 1.26496 1.04584 0.77402 0.73681 0.73013 1.93515 1.81079 1.60089 1.63871 1.93518 1.63435 1.61946 1.79970 1.30437 1.20388 1.12240 1.08760 1.18835 0.98336 0.94132 0.90739 1.21557 0.94751 1.29803 1.11164 0.90262 1.26103 1.00465 0.96989 0.96789 1.70109 1.29438 1.38953 1.19055 0.85296 0.78989 0.77835 0.78312 1.17663 1.20603 1.20698 1.19866 0.99814 0.94844 0.94081 1.21889 0.92572 0.93062 0.99428 1.21657 0.96762 1.02803 0.90453 1.21464 0.94769 0.89596 1.01627 1.21270 1.12691 0.92937 0.87589 1.43998 0.97655 1.01374 1.02539 1.94567 1.60629 0.96463 1.89100 1.94490 1.47895 1.72535 1.23373 1.20994 0.93811 1.02532 0.90432 0.89729 0.89244 0.90833 0.73479 0.83565 0.83166 0.97560 0.97644 0.92502 0.80921 0.79354 0.81466 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.47 71.98 0.68 -1.43 16 2 C 0.18 2.86 3.01 44.24 0.13 2.99 16 3 H 0.10 1.83 7.34 -2.39 -0.02 1.81 16 4 N -1.10 -20.38 5.31 -172.52 -0.92 -21.30 16 5 S 2.62 82.32 5.44 -56.49 -0.31 82.01 16 6 O -1.00 -37.69 18.08 -127.65 -2.31 -40.00 16 7 O -1.00 -38.93 17.39 -127.65 -2.22 -41.15 16 8 C -0.59 -19.43 5.17 71.98 0.37 -19.05 16 9 C 0.02 0.91 4.98 29.85 0.15 1.06 16 10 C -0.53 -28.12 9.11 25.60 0.23 -27.89 16 11 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 12 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 13 N -0.94 -55.80 13.29 21.45 0.28 -55.52 16 14 Si 0.97 42.00 29.54 68.60 2.03 44.03 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.08 -1.14 4.96 -19.87 -0.10 -1.24 16 19 C -0.05 -0.40 9.16 22.27 0.20 -0.20 16 20 C -0.10 -0.58 10.05 22.27 0.22 -0.36 16 21 C -0.06 -0.62 9.56 22.27 0.21 -0.41 16 22 C -0.06 -1.12 6.85 36.38 0.25 -0.87 16 23 N 0.03 0.73 4.45 -46.46 -0.21 0.52 16 24 O -0.20 -5.54 18.45 18.88 0.35 -5.19 16 25 O -0.16 -4.04 18.45 18.89 0.35 -3.70 16 26 C -0.06 -1.00 9.18 22.27 0.20 -0.80 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.00 5.82 -2.39 -0.01 0.99 16 30 H 0.43 5.29 7.03 -96.74 -0.68 4.61 16 31 H 0.15 4.07 6.80 -2.39 -0.02 4.06 16 32 H 0.15 4.13 8.14 -2.39 -0.02 4.11 16 33 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 36 H 0.17 0.35 6.80 -2.91 -0.02 0.33 16 37 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16 38 H 0.17 1.37 7.61 -2.91 -0.02 1.35 16 39 H 0.15 2.70 7.59 -2.91 -0.02 2.68 16 Total: -1.00 -81.15 352.47 0.49 -80.65 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.42 Total: 7.66 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 3.03 Total: -48.02 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -0.84 Total: -76.29 kcal Atomic # 8 Polarization: -86.21 SS G_CDS: -3.83 Total: -90.04 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 82.32 SS G_CDS: -0.31 Total: 82.01 kcal Total: -81.15 0.49 -80.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111330741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.053 kcal (2) G-P(sol) polarization free energy of solvation -81.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds