Wall clock time and date at job start Tue Mar 31 2020 15:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40078 * 120.88296 * 53.98830 * 3 2 1 5 5 C 1.38051 * 119.14570 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.50699 * 179.97438 * 5 4 3 7 7 N 1.32042 * 120.97718 * 359.72117 * 5 4 3 8 8 C 1.32389 * 121.94683 * 0.57151 * 7 5 4 9 9 N 1.39027 * 119.62864 * 179.70311 * 8 7 5 10 10 C 1.46504 * 120.00166 * 4.73069 * 9 8 7 11 11 C 1.50701 * 109.47173 * 269.99726 * 10 9 8 12 12 H 1.07999 * 119.99726 * 359.97438 * 11 10 9 13 13 C 1.37866 * 120.00214 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00714 * 180.02562 * 13 11 10 15 15 Si 1.86810 * 119.99939 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46722 * 89.99987 * 15 13 11 17 17 H 1.48503 * 109.47095 * 209.99957 * 15 13 11 18 18 H 1.48503 * 109.47042 * 330.00162 * 15 13 11 19 19 C 1.46500 * 119.99968 * 184.72754 * 9 8 7 20 20 C 1.50700 * 109.47380 * 270.00692 * 19 9 8 21 21 C 1.38677 * 120.41537 * 270.26287 * 20 19 9 22 22 C 1.38625 * 118.42126 * 180.22222 * 21 20 19 23 23 C 1.38223 * 119.15978 * 359.46985 * 22 21 20 24 24 N 1.31856 * 120.76567 * 0.30777 * 23 22 21 25 25 C 1.31884 * 121.72562 * 359.97275 * 24 23 22 26 26 C 1.38992 * 120.73499 * 359.43349 * 8 7 5 27 27 H 1.07995 * 120.42313 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.47175 * 29.99853 * 10 9 8 29 29 H 1.08999 * 109.47090 * 149.99696 * 10 9 8 30 30 H 0.96992 * 120.00539 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.47314 * 149.99937 * 19 9 8 32 32 H 1.09007 * 109.46809 * 30.00076 * 19 9 8 33 33 H 1.08003 * 120.78603 * 359.97006 * 21 20 19 34 34 H 1.08002 * 120.42343 * 179.75479 * 22 21 20 35 35 H 1.08005 * 119.61951 * 180.28273 * 23 22 21 36 36 H 1.07998 * 119.61861 * 180.02562 * 25 24 23 37 37 H 1.08000 * 120.52023 * 180.29699 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2874 -0.7059 -0.9724 5 6 4.6672 -0.6802 -0.9389 6 17 5.5681 -1.5530 -2.1391 7 7 5.3119 0.0024 -0.0105 8 6 4.6736 0.6797 0.9311 9 7 5.4009 1.3769 1.8890 10 6 6.8612 1.4456 1.7935 11 6 7.4686 0.2863 2.5407 12 1 6.8306 -0.4296 3.0375 13 6 8.8385 0.1398 2.5902 14 7 9.3686 -0.8722 3.2419 15 14 9.9420 1.3778 1.7303 16 1 10.2750 2.4795 2.6687 17 1 11.1918 0.7062 1.2919 18 1 9.2363 1.9318 0.5469 19 6 4.7071 2.0431 2.9940 20 6 4.3625 3.4543 2.5929 21 6 5.2537 4.4896 2.8318 22 6 4.8925 5.7724 2.4501 23 6 3.6694 5.9738 1.8384 24 7 2.8488 4.9645 1.6228 25 6 3.1569 3.7322 1.9775 26 6 3.2845 0.7060 0.9692 27 1 2.7691 -1.2627 -1.7390 28 1 7.1594 1.3990 0.7461 29 1 7.2103 2.3817 2.2293 30 1 10.3325 -0.9750 3.2770 31 1 5.3545 2.0624 3.8706 32 1 3.7925 1.4988 3.2296 33 1 6.2048 4.3015 3.3076 34 1 5.5601 6.6032 2.6243 35 1 3.3824 6.9695 1.5338 36 1 2.4591 2.9309 1.7841 37 1 2.7673 1.2636 1.7360 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122603232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:11 Heat of formation + Delta-G solvation = 118.305364 kcal Electronic energy + Delta-G solvation = -24501.361055 eV Core-core repulsion = 20884.566594 eV Total energy + Delta-G solvation = -3616.794461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62802 -39.94416 -37.14304 -36.79513 -35.98509 -33.24512 -32.63726 -32.45355 -31.50563 -30.25632 -28.15050 -25.95193 -24.78938 -23.57678 -23.12481 -22.22529 -21.16592 -18.74618 -17.26829 -16.98570 -16.92790 -16.44966 -16.03508 -15.83199 -15.32527 -14.85526 -14.67896 -14.56273 -14.09217 -13.67603 -13.61841 -13.40600 -13.15558 -13.08563 -13.02583 -12.56920 -12.24171 -12.01326 -11.92122 -11.70955 -11.40446 -11.11422 -11.02660 -10.67801 -10.41785 -9.87075 -9.84762 -9.62277 -9.54758 -9.32585 -9.20352 -9.08288 -8.67598 -7.26216 -6.16772 -4.16265 0.67291 0.99574 1.22031 1.26463 1.89412 2.48404 2.99431 3.18214 3.25493 3.30916 3.35901 3.63525 3.85849 3.93352 4.31055 4.32275 4.68704 4.73923 4.90269 4.92783 4.94955 4.99555 5.05069 5.14802 5.26513 5.31253 5.52062 5.56301 5.63053 5.80707 5.98761 6.06113 6.15382 6.25606 6.45818 6.62712 6.78609 7.25549 7.29635 7.47441 7.69061 7.89831 8.20692 8.41463 8.86967 9.42513 10.96316 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.006409 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.616831 B = 4367.863596 C = 7277.751720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.263 3.737 3 C 0.071 3.929 4 C -0.196 4.196 5 C 0.240 3.760 6 Cl -0.030 7.030 7 N -0.497 5.497 8 C 0.446 3.554 9 N -0.568 5.568 10 C 0.225 3.775 11 C -0.527 4.527 12 H 0.076 0.924 13 C 0.077 3.923 14 N -0.894 5.894 15 Si 0.868 3.132 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.263 1.263 19 C 0.164 3.836 20 C -0.154 4.154 21 C -0.055 4.055 22 C -0.174 4.174 23 C 0.094 3.906 24 N -0.487 5.487 25 C 0.106 3.894 26 C -0.212 4.212 27 H 0.146 0.854 28 H 0.046 0.954 29 H 0.024 0.976 30 H 0.265 0.735 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 8.149 -4.025 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.080 5.080 2 C -0.053 4.053 3 C 0.060 3.940 4 C -0.223 4.223 5 C 0.072 3.928 6 Cl -0.001 7.001 7 N -0.216 5.216 8 C 0.208 3.792 9 N -0.274 5.274 10 C 0.105 3.895 11 C -0.565 4.565 12 H 0.094 0.906 13 C -0.126 4.126 14 N -0.532 5.532 15 Si 0.695 3.305 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.188 1.188 19 C 0.040 3.960 20 C -0.157 4.157 21 C -0.082 4.082 22 C -0.193 4.193 23 C -0.063 4.063 24 N -0.195 5.195 25 C -0.051 4.051 26 C -0.241 4.241 27 H 0.163 0.837 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.157 0.843 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.168 0.832 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.854 8.275 -4.302 14.311 hybrid contribution 1.433 0.285 -0.088 1.464 sum -9.421 8.560 -4.390 13.464 Atomic orbital electron populations 1.81252 1.11702 1.07616 1.07474 1.25374 0.92221 0.93889 0.93793 1.15587 0.84394 0.97941 0.96052 1.21259 0.92343 1.06224 1.02495 1.20955 0.87714 0.93352 0.90768 1.98408 1.76611 1.72961 1.52118 1.66430 1.40515 1.10580 1.04092 1.17789 0.86490 0.87778 0.87140 1.46880 1.07702 1.49972 1.22796 1.19770 0.73749 0.97128 0.98891 1.21250 0.92131 1.10031 1.33114 0.90591 1.24794 0.97797 0.95266 0.94716 1.69877 1.11797 1.29633 1.41887 0.86972 0.81015 0.81764 0.80726 1.20230 1.20893 1.18794 1.20354 0.98636 0.87093 0.89945 1.21492 0.95766 0.97598 1.00847 1.21635 0.98875 0.92060 0.95628 1.22158 0.98424 0.97964 1.00797 1.22744 0.90510 0.98067 0.94979 1.67686 1.34179 1.00059 1.17568 1.22767 0.94745 0.93960 0.93644 1.21527 0.93296 1.06706 1.02555 0.83668 0.93581 0.95863 0.92500 0.87717 0.89713 0.84324 0.84810 0.83009 0.83152 0.83918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.68 18.54 41.84 0.78 -4.91 16 2 C 0.26 3.31 15.40 -22.47 -0.35 2.96 16 3 C 0.07 0.90 5.75 -106.76 -0.61 0.29 16 4 C -0.20 -2.51 9.61 -38.96 -0.37 -2.88 16 5 C 0.24 3.75 7.26 -17.53 -0.13 3.62 16 6 Cl -0.03 -0.43 29.10 -51.86 -1.51 -1.94 16 7 N -0.50 -9.26 9.11 -9.62 -0.09 -9.34 16 8 C 0.45 7.53 7.37 -155.06 -1.14 6.39 16 9 N -0.57 -9.89 2.56 -176.62 -0.45 -10.34 16 10 C 0.22 4.76 4.21 -5.19 -0.02 4.74 16 11 C -0.53 -13.51 9.94 -34.44 -0.34 -13.86 16 12 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 13 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 15 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 19 C 0.16 2.22 5.35 -5.19 -0.03 2.19 16 20 C -0.15 -1.94 5.48 -104.48 -0.57 -2.51 16 21 C -0.06 -0.67 9.86 -39.28 -0.39 -1.05 16 22 C -0.17 -1.83 10.11 -39.44 -0.40 -2.23 16 23 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 24 N -0.49 -6.45 10.36 -13.25 -0.14 -6.59 16 25 C 0.11 1.34 10.36 -17.55 -0.18 1.16 16 26 C -0.21 -2.85 8.26 -38.78 -0.32 -3.17 16 27 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.05 1.06 6.50 -51.93 -0.34 0.72 16 29 H 0.02 0.47 7.50 -51.93 -0.39 0.08 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.10 1.43 8.03 -51.93 -0.42 1.01 16 32 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 33 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.15 1.69 5.51 -52.49 -0.29 1.40 16 37 H 0.14 1.59 3.93 -52.49 -0.21 1.39 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -30.70 343.86 -8.52 -39.22 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.25 Total: 0.08 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -5.15 Total: -1.52 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.87 Total: -56.34 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.70 -8.52 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122603232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.525 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds