Wall clock time and date at job start Tue Mar 31 2020 15:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40078 * 120.88296 * 53.98830 * 3 2 1 5 5 C 1.38051 * 119.14570 * 179.97438 * 4 3 2 6 6 Cl 1.73605 * 119.50699 * 179.97438 * 5 4 3 7 7 N 1.32042 * 120.97718 * 359.72117 * 5 4 3 8 8 C 1.32389 * 121.94683 * 0.57151 * 7 5 4 9 9 N 1.39027 * 119.62864 * 179.70311 * 8 7 5 10 10 C 1.46504 * 120.00166 * 4.73069 * 9 8 7 11 11 C 1.50701 * 109.47173 * 269.99726 * 10 9 8 12 12 H 1.07999 * 119.99726 * 359.97438 * 11 10 9 13 13 C 1.37866 * 120.00214 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00714 * 180.02562 * 13 11 10 15 15 Si 1.86810 * 119.99939 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46722 * 89.99987 * 15 13 11 17 17 H 1.48503 * 109.47095 * 209.99957 * 15 13 11 18 18 H 1.48503 * 109.47042 * 330.00162 * 15 13 11 19 19 C 1.46500 * 119.99968 * 184.72754 * 9 8 7 20 20 C 1.50700 * 109.47380 * 270.00692 * 19 9 8 21 21 C 1.38677 * 120.41537 * 270.26287 * 20 19 9 22 22 C 1.38625 * 118.42126 * 180.22222 * 21 20 19 23 23 C 1.38223 * 119.15978 * 359.46985 * 22 21 20 24 24 N 1.31856 * 120.76567 * 0.30777 * 23 22 21 25 25 C 1.31884 * 121.72562 * 359.97275 * 24 23 22 26 26 C 1.38992 * 120.73499 * 359.43349 * 8 7 5 27 27 H 1.07995 * 120.42313 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.47175 * 29.99853 * 10 9 8 29 29 H 1.08999 * 109.47090 * 149.99696 * 10 9 8 30 30 H 0.96992 * 120.00539 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.47314 * 149.99937 * 19 9 8 32 32 H 1.09007 * 109.46809 * 30.00076 * 19 9 8 33 33 H 1.08003 * 120.78603 * 359.97006 * 21 20 19 34 34 H 1.08002 * 120.42343 * 179.75479 * 22 21 20 35 35 H 1.08005 * 119.61951 * 180.28273 * 23 22 21 36 36 H 1.07998 * 119.61861 * 180.02562 * 25 24 23 37 37 H 1.08000 * 120.52023 * 180.29699 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2874 -0.7059 -0.9724 5 6 4.6672 -0.6802 -0.9389 6 17 5.5681 -1.5530 -2.1391 7 7 5.3119 0.0024 -0.0105 8 6 4.6736 0.6797 0.9311 9 7 5.4009 1.3769 1.8890 10 6 6.8612 1.4456 1.7935 11 6 7.4686 0.2863 2.5407 12 1 6.8306 -0.4296 3.0375 13 6 8.8385 0.1398 2.5902 14 7 9.3686 -0.8722 3.2419 15 14 9.9420 1.3778 1.7303 16 1 10.2750 2.4795 2.6687 17 1 11.1918 0.7062 1.2919 18 1 9.2363 1.9318 0.5469 19 6 4.7071 2.0431 2.9940 20 6 4.3625 3.4543 2.5929 21 6 5.2537 4.4896 2.8318 22 6 4.8925 5.7724 2.4501 23 6 3.6694 5.9738 1.8384 24 7 2.8488 4.9645 1.6228 25 6 3.1569 3.7322 1.9775 26 6 3.2845 0.7060 0.9692 27 1 2.7691 -1.2627 -1.7390 28 1 7.1594 1.3990 0.7461 29 1 7.2103 2.3817 2.2293 30 1 10.3325 -0.9750 3.2770 31 1 5.3545 2.0624 3.8706 32 1 3.7925 1.4988 3.2296 33 1 6.2048 4.3015 3.3076 34 1 5.5601 6.6032 2.6243 35 1 3.3824 6.9695 1.5338 36 1 2.4591 2.9309 1.7841 37 1 2.7673 1.2636 1.7360 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122603232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:10 Heat of formation + Delta-G solvation = 101.550590 kcal Electronic energy + Delta-G solvation = -24502.087596 eV Core-core repulsion = 20884.566594 eV Total energy + Delta-G solvation = -3617.521002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.079 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73725 -40.92457 -38.33004 -37.92319 -37.16161 -34.84668 -34.07002 -33.45488 -32.51418 -31.64678 -29.57360 -27.15094 -26.05567 -24.49617 -24.35413 -23.58570 -22.33380 -19.93670 -19.02082 -18.18325 -18.08905 -17.47123 -17.15597 -16.85234 -16.54997 -16.14103 -15.99994 -15.74728 -15.48751 -14.77402 -14.66256 -14.46507 -14.39294 -14.22759 -14.13214 -13.94775 -13.56095 -13.34385 -13.17324 -13.00658 -12.69845 -12.43623 -12.31308 -12.24127 -12.01457 -11.67862 -11.05623 -10.75480 -10.73035 -10.65588 -10.52415 -10.34088 -9.97957 -8.54901 -8.23483 -6.26267 -0.44338 0.06585 0.13505 0.35569 0.74854 1.36220 1.41093 1.44018 1.50456 1.90363 2.13211 2.37686 2.53976 2.76636 2.95316 3.12086 3.45783 3.69227 3.74983 3.83895 3.88854 3.96084 4.08892 4.11163 4.21504 4.38869 4.45132 4.67663 4.69022 4.79481 4.84658 4.95058 4.99751 5.18997 5.22843 5.34909 5.55655 5.77736 5.88049 6.23183 6.23802 6.46287 6.76422 7.02216 7.02723 7.36968 8.93077 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007266 B = 0.006409 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3852.616831 B = 4367.863596 C = 7277.751720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.285 3.715 3 C 0.079 3.921 4 C -0.173 4.173 5 C 0.221 3.779 6 Cl -0.029 7.029 7 N -0.542 5.542 8 C 0.425 3.575 9 N -0.580 5.580 10 C 0.241 3.759 11 C -0.516 4.516 12 H 0.033 0.967 13 C 0.018 3.982 14 N -0.947 5.947 15 Si 0.934 3.066 16 H -0.257 1.257 17 H -0.290 1.290 18 H -0.252 1.252 19 C 0.165 3.835 20 C -0.159 4.159 21 C -0.069 4.069 22 C -0.168 4.168 23 C 0.089 3.911 24 N -0.510 5.510 25 C 0.099 3.901 26 C -0.194 4.194 27 H 0.176 0.824 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.180 0.820 36 H 0.159 0.841 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.931 10.240 -4.892 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.031 4.031 3 C 0.067 3.933 4 C -0.200 4.200 5 C 0.054 3.946 6 Cl 0.000 7.000 7 N -0.262 5.262 8 C 0.188 3.812 9 N -0.288 5.288 10 C 0.118 3.882 11 C -0.555 4.555 12 H 0.051 0.949 13 C -0.180 4.180 14 N -0.587 5.587 15 Si 0.758 3.242 16 H -0.181 1.181 17 H -0.216 1.216 18 H -0.176 1.176 19 C 0.042 3.958 20 C -0.163 4.163 21 C -0.096 4.096 22 C -0.187 4.187 23 C -0.067 4.067 24 N -0.219 5.219 25 C -0.058 4.058 26 C -0.222 4.222 27 H 0.193 0.807 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.197 0.803 36 H 0.176 0.824 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.211 10.371 -5.186 16.839 hybrid contribution 1.719 -0.409 0.166 1.774 sum -10.493 9.962 -5.020 15.314 Atomic orbital electron populations 1.81299 1.12168 1.08211 1.08060 1.25033 0.91649 0.93253 0.93174 1.15517 0.84380 0.97610 0.95749 1.21532 0.91236 1.04799 1.02396 1.21170 0.88708 0.93880 0.90822 1.98401 1.76858 1.72876 1.51904 1.66296 1.42519 1.11919 1.05461 1.18025 0.87642 0.88290 0.87204 1.46755 1.06329 1.51381 1.24299 1.19302 0.76367 0.95569 0.96914 1.21479 0.91711 1.10254 1.32048 0.94894 1.25653 0.99572 0.97199 0.95591 1.70042 1.12048 1.32236 1.44414 0.85924 0.78463 0.79662 0.80184 1.18150 1.21630 1.17619 1.20461 0.98927 0.87888 0.88553 1.21357 0.96229 0.97024 1.01649 1.21846 0.99023 0.92778 0.95931 1.22458 0.98577 0.98137 0.99547 1.23267 0.90399 0.98792 0.94268 1.67714 1.35175 1.00601 1.18417 1.22872 0.94887 0.94282 0.93736 1.21649 0.91918 1.05872 1.02769 0.80665 0.95249 0.94223 0.92667 0.88445 0.87695 0.84061 0.81979 0.80279 0.82355 0.81649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -10.79 18.54 19.00 0.35 -10.44 16 2 C 0.28 6.39 15.40 88.33 1.36 7.75 16 3 C 0.08 1.80 5.75 -21.25 -0.12 1.68 16 4 C -0.17 -4.05 9.61 22.67 0.22 -3.83 16 5 C 0.22 6.72 7.26 84.62 0.61 7.33 16 6 Cl -0.03 -0.83 29.10 -2.72 -0.08 -0.91 16 7 N -0.54 -20.17 9.11 -184.34 -1.68 -21.84 16 8 C 0.42 14.13 7.37 133.02 0.98 15.11 16 9 N -0.58 -20.08 2.56 -712.70 -1.82 -21.90 16 10 C 0.24 10.20 4.21 85.63 0.36 10.56 16 11 C -0.52 -27.25 9.94 25.60 0.25 -26.99 16 12 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 13 C 0.02 0.97 5.47 84.65 0.46 1.43 16 14 N -0.95 -56.86 13.96 21.44 0.30 -56.57 16 15 Si 0.93 41.46 27.47 68.60 1.88 43.35 16 16 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 19 C 0.16 4.33 5.35 85.63 0.46 4.79 16 20 C -0.16 -3.79 5.48 -19.77 -0.11 -3.90 16 21 C -0.07 -1.53 9.86 22.47 0.22 -1.31 16 22 C -0.17 -3.06 10.11 22.36 0.23 -2.83 16 23 C 0.09 1.74 11.18 84.69 0.95 2.69 16 24 N -0.51 -12.44 10.36 -195.84 -2.03 -14.47 16 25 C 0.10 2.32 10.36 84.67 0.88 3.20 16 26 C -0.19 -4.87 8.26 22.79 0.19 -4.68 16 27 H 0.18 3.00 8.06 -2.91 -0.02 2.97 16 28 H 0.03 1.36 6.50 -2.39 -0.02 1.34 16 29 H 0.04 1.56 7.50 -2.39 -0.02 1.54 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 32 H 0.11 2.24 6.34 -2.38 -0.02 2.22 16 33 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.18 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.16 3.23 5.51 -2.91 -0.02 3.21 16 37 H 0.17 3.30 3.93 -2.91 -0.01 3.29 16 Total: -1.00 -68.42 343.86 4.95 -63.47 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.08 Total: 8.32 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: 6.94 Total: 10.99 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -4.88 Total: -125.21 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.35 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -68.42 4.95 -63.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122603232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.022 kcal (2) G-P(sol) polarization free energy of solvation -68.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds