Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31678 * 1 3 3 Si 1.86795 * 119.99884 * 2 1 4 4 H 1.48502 * 109.46995 * 269.99641 * 3 2 1 5 5 H 1.48504 * 109.46967 * 29.99624 * 3 2 1 6 6 H 1.48496 * 109.47346 * 149.99515 * 3 2 1 7 7 C 1.38603 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00206 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.76203 * 100.00039 * 180.02562 * 9 7 2 11 11 N 1.31594 * 126.37182 * 359.97438 * 10 9 7 12 12 N 1.28514 * 110.06713 * 179.97438 * 11 10 9 13 13 C 1.31672 * 109.93688 * 359.97438 * 12 11 10 14 14 C 1.47260 * 126.46492 * 179.97438 * 13 12 11 15 15 C 1.37784 * 126.35433 * 15.02946 * 14 13 12 16 16 C 1.40387 * 107.58747 * 180.22876 * 15 14 13 17 17 C 1.48441 * 125.76986 * 179.73629 * 16 15 14 18 18 C 1.39306 * 120.12140 * 359.72172 * 17 16 15 19 19 C 1.38033 * 119.87977 * 179.74345 * 18 17 16 20 20 C 1.38315 * 120.11480 * 0.53120 * 19 18 17 21 21 C 1.38321 * 120.24191 * 359.74289 * 20 19 18 22 22 C 1.38016 * 120.11593 * 359.97438 * 21 20 19 23 23 N 1.31675 * 108.44784 * 359.54891 * 16 15 14 24 24 N 1.36635 * 126.35615 * 194.98527 * 14 13 12 25 25 H 0.97000 * 126.01432 * 0.05620 * 24 14 13 26 26 N 1.36790 * 126.37609 * 180.26206 * 10 9 7 27 27 N 1.36594 * 127.16671 * 0.02562 * 26 10 9 28 28 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 29 29 H 1.08002 * 126.20198 * 359.95783 * 15 14 13 30 30 H 1.07999 * 120.06127 * 0.02562 * 18 17 16 31 31 H 1.07994 * 119.94039 * 180.29798 * 19 18 17 32 32 H 1.08000 * 119.87840 * 179.71528 * 20 19 18 33 33 H 1.07998 * 119.93788 * 179.97438 * 21 20 19 34 34 H 1.08006 * 120.06045 * 180.02562 * 22 21 20 35 35 H 1.00901 * 111.00168 * 270.14270 * 27 26 10 36 36 H 1.00904 * 110.99987 * 34.09266 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 2.4983 2.0463 -1.4001 5 1 1.4481 2.6526 0.7000 6 1 3.5482 1.4403 0.7001 7 6 2.0098 -1.2003 0.0005 8 1 1.4698 -2.1356 0.0005 9 16 3.7717 -1.2003 0.0012 10 6 4.0778 -2.9355 0.0009 11 7 3.1699 -3.8881 0.0009 12 7 3.7394 -5.0401 0.0001 13 6 5.0480 -4.8940 -0.0009 14 6 6.0492 -5.9739 -0.0014 15 6 5.8184 -7.3015 -0.2887 16 6 7.0411 -7.9806 -0.1672 17 6 7.2516 -9.4340 -0.3833 18 6 6.1793 -10.2511 -0.7343 19 6 6.3817 -11.6011 -0.9392 20 6 7.6443 -12.1447 -0.7858 21 6 8.7114 -11.3389 -0.4319 22 6 8.5212 -9.9868 -0.2303 23 7 7.9702 -7.1094 0.1669 24 7 7.3796 -5.8451 0.2822 25 1 7.8348 -5.0226 0.5214 26 7 5.3033 -3.5432 0.0063 27 7 6.5261 -2.9345 0.0134 28 1 -0.4850 0.8400 -0.0004 29 1 4.8683 -7.7408 -0.5545 30 1 5.1923 -9.8284 -0.8503 31 1 5.5521 -12.2346 -1.2160 32 1 7.7974 -13.2022 -0.9426 33 1 9.6951 -11.7686 -0.3131 34 1 9.3552 -9.3584 0.0457 35 1 6.8536 -2.7700 -0.9267 36 1 6.4996 -2.0758 0.5425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125851359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = 194.503243 kcal Electronic energy + Delta-G solvation = -23200.741698 eV Core-core repulsion = 19621.587883 eV Total energy + Delta-G solvation = -3579.153815 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.47300 -40.99548 -38.99264 -36.29597 -33.14273 -32.79726 -31.72517 -31.07600 -29.69546 -29.47202 -28.74237 -26.02453 -23.81440 -23.40965 -22.63840 -22.28102 -20.40932 -19.92960 -19.07872 -18.08550 -17.32514 -16.88038 -16.76747 -15.80667 -15.57965 -15.27116 -15.08709 -14.94105 -14.47566 -14.09500 -13.81036 -13.56024 -13.21611 -13.08268 -12.95447 -12.12138 -11.62605 -11.50459 -11.43241 -11.40826 -11.34146 -11.20801 -10.79425 -10.62211 -10.28965 -10.25283 -9.98323 -9.62290 -9.32639 -9.27999 -9.11527 -8.60472 -8.44017 -7.31369 -6.58193 -4.42377 0.76717 1.13268 1.24076 1.71191 2.29442 2.39355 2.63243 2.75811 2.98445 3.02729 3.11098 3.33239 3.78168 3.79737 3.92958 4.13869 4.38151 4.66052 4.79368 4.79484 4.86570 4.92521 5.01087 5.27548 5.32549 5.42941 5.57098 5.67755 5.72852 5.86662 5.95383 6.13681 6.22533 6.32212 6.36324 6.39556 6.49776 6.78035 7.08832 7.47081 7.51428 7.67087 8.46073 8.78216 8.96161 10.50441 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.002312 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.152491 B =12105.297988 C =12847.958192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.102 3.898 3 Si 0.844 3.156 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.241 1.241 7 C -0.526 4.526 8 H 0.125 0.875 9 S 0.060 5.940 10 C 0.168 3.832 11 N -0.270 5.270 12 N -0.237 5.237 13 C 0.216 3.784 14 C 0.181 3.819 15 C -0.210 4.210 16 C 0.110 3.890 17 C -0.011 4.011 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.093 4.093 23 N -0.273 5.273 24 N -0.454 5.454 25 H 0.446 0.554 26 N -0.323 5.323 27 N -0.593 5.593 28 H 0.277 0.723 29 H 0.161 0.839 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.362 0.638 36 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.846 -14.258 -1.485 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.109 4.109 3 Si 0.668 3.332 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.166 1.166 7 C -0.675 4.675 8 H 0.143 0.857 9 S 0.292 5.708 10 C -0.204 4.204 11 N -0.117 5.117 12 N -0.082 5.082 13 C -0.051 4.051 14 C 0.051 3.949 15 C -0.242 4.242 16 C -0.052 4.052 17 C -0.013 4.013 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.142 4.142 22 C -0.113 4.113 23 N -0.098 5.098 24 N -0.166 5.166 25 H 0.293 0.707 26 N -0.110 5.110 27 N -0.224 5.224 28 H 0.088 0.912 29 H 0.179 0.821 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.179 0.821 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 18.487 -14.243 -0.837 23.353 hybrid contribution -0.367 1.924 -0.489 2.019 sum 18.120 -12.319 -1.326 21.951 Atomic orbital electron populations 1.69914 1.05565 1.28142 1.45150 1.24667 0.94659 0.98385 0.93230 0.86994 0.81546 0.84433 0.80194 1.18616 1.18624 1.16569 1.22452 0.85322 0.99740 1.59937 0.85695 1.82743 1.14451 0.85969 1.87685 1.28172 0.82804 1.04410 1.04988 1.75003 1.22880 0.92897 1.20904 1.74596 1.00445 1.18006 1.15133 1.21302 0.92692 0.79550 1.11575 1.17919 0.83117 0.91807 1.02052 1.21602 0.99542 0.90444 1.12563 1.20447 0.91359 0.93039 1.00392 1.17817 0.94074 0.88197 1.01184 1.21234 0.98681 0.93430 0.98000 1.21088 0.97370 0.94893 1.00536 1.21243 0.93035 0.99836 0.99365 1.21086 0.99122 0.93566 1.00460 1.21249 0.96457 0.95174 0.98405 1.77392 1.20261 0.88275 1.23909 1.46614 1.05318 1.09400 1.55286 0.70685 1.45152 1.01473 1.05199 1.59220 1.59684 1.07101 1.34105 1.21550 0.91218 0.82139 0.85060 0.85593 0.86056 0.85884 0.85354 0.82097 0.80152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.03 13.97 55.48 0.78 -23.25 16 2 C 0.10 2.72 5.49 -17.48 -0.10 2.62 16 3 Si 0.84 18.34 27.73 -169.99 -4.71 13.63 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.24 -4.87 6.73 56.52 0.38 -4.49 16 7 C -0.53 -14.15 9.91 30.87 0.31 -13.84 16 8 H 0.13 3.78 7.15 -52.49 -0.38 3.41 16 9 S 0.06 1.28 19.52 -107.50 -2.10 -0.82 16 10 C 0.17 3.51 8.13 -87.84 -0.71 2.79 16 11 N -0.27 -6.38 11.02 30.78 0.34 -6.04 16 12 N -0.24 -5.02 12.24 32.50 0.40 -4.63 16 13 C 0.22 3.85 8.01 -153.77 -1.23 2.62 16 14 C 0.18 2.75 7.12 -82.23 -0.59 2.16 16 15 C -0.21 -2.99 10.18 -38.94 -0.40 -3.38 16 16 C 0.11 1.48 6.97 -82.92 -0.58 0.90 16 17 C -0.01 -0.12 5.88 -104.89 -0.62 -0.74 16 18 C -0.09 -0.94 9.57 -39.26 -0.38 -1.31 16 19 C -0.12 -1.01 10.03 -39.63 -0.40 -1.41 16 20 C -0.12 -0.91 10.04 -39.52 -0.40 -1.31 16 21 C -0.12 -1.05 10.03 -39.63 -0.40 -1.44 16 22 C -0.09 -0.96 9.68 -39.26 -0.38 -1.34 16 23 N -0.27 -3.75 12.31 33.35 0.41 -3.34 16 24 N -0.45 -5.97 7.34 33.39 0.25 -5.73 16 25 H 0.45 4.93 7.99 -182.66 -1.46 3.47 16 26 N -0.32 -5.39 3.84 -10.39 -0.04 -5.43 16 27 N -0.59 -6.69 9.36 60.35 0.57 -6.13 16 28 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.16 2.09 7.31 -52.49 -0.38 1.71 16 30 H 0.13 1.18 7.01 -52.49 -0.37 0.81 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.13 1.28 7.84 -52.48 -0.41 0.86 16 35 H 0.36 3.29 9.21 -181.37 -1.67 1.62 16 36 H 0.38 3.84 8.81 -181.36 -1.60 2.24 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -31.75 337.13 -11.59 -43.34 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.69 Total: 7.00 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -5.86 Total: -13.69 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 2.69 Total: -54.54 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.71 Total: 13.63 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.10 Total: -0.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.75 -11.59 -43.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125851359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.844 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 194.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds