Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31678 * 1 3 3 Si 1.86795 * 119.99884 * 2 1 4 4 H 1.48502 * 109.46995 * 269.99641 * 3 2 1 5 5 H 1.48504 * 109.46967 * 29.99624 * 3 2 1 6 6 H 1.48496 * 109.47346 * 149.99515 * 3 2 1 7 7 C 1.38603 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00206 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.76203 * 100.00039 * 180.02562 * 9 7 2 11 11 N 1.31594 * 126.37182 * 359.97438 * 10 9 7 12 12 N 1.28514 * 110.06713 * 179.97438 * 11 10 9 13 13 C 1.31672 * 109.93688 * 359.97438 * 12 11 10 14 14 C 1.47260 * 126.46492 * 179.97438 * 13 12 11 15 15 C 1.37784 * 126.35433 * 15.02946 * 14 13 12 16 16 C 1.40387 * 107.58747 * 180.22876 * 15 14 13 17 17 C 1.48441 * 125.76986 * 179.73629 * 16 15 14 18 18 C 1.39306 * 120.12140 * 359.72172 * 17 16 15 19 19 C 1.38033 * 119.87977 * 179.74345 * 18 17 16 20 20 C 1.38315 * 120.11480 * 0.53120 * 19 18 17 21 21 C 1.38321 * 120.24191 * 359.74289 * 20 19 18 22 22 C 1.38016 * 120.11593 * 359.97438 * 21 20 19 23 23 N 1.31675 * 108.44784 * 359.54891 * 16 15 14 24 24 N 1.36635 * 126.35615 * 194.98527 * 14 13 12 25 25 H 0.97000 * 126.01432 * 0.05620 * 24 14 13 26 26 N 1.36790 * 126.37609 * 180.26206 * 10 9 7 27 27 N 1.36594 * 127.16671 * 0.02562 * 26 10 9 28 28 H 0.96999 * 119.99964 * 0.02562 * 1 2 3 29 29 H 1.08002 * 126.20198 * 359.95783 * 15 14 13 30 30 H 1.07999 * 120.06127 * 0.02562 * 18 17 16 31 31 H 1.07994 * 119.94039 * 180.29798 * 19 18 17 32 32 H 1.08000 * 119.87840 * 179.71528 * 20 19 18 33 33 H 1.07998 * 119.93788 * 179.97438 * 21 20 19 34 34 H 1.08006 * 120.06045 * 180.02562 * 22 21 20 35 35 H 1.00901 * 111.00168 * 270.14270 * 27 26 10 36 36 H 1.00904 * 110.99987 * 34.09266 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2507 1.6177 0.0000 4 1 2.4983 2.0463 -1.4001 5 1 1.4481 2.6526 0.7000 6 1 3.5482 1.4403 0.7001 7 6 2.0098 -1.2003 0.0005 8 1 1.4698 -2.1356 0.0005 9 16 3.7717 -1.2003 0.0012 10 6 4.0778 -2.9355 0.0009 11 7 3.1699 -3.8881 0.0009 12 7 3.7394 -5.0401 0.0001 13 6 5.0480 -4.8940 -0.0009 14 6 6.0492 -5.9739 -0.0014 15 6 5.8184 -7.3015 -0.2887 16 6 7.0411 -7.9806 -0.1672 17 6 7.2516 -9.4340 -0.3833 18 6 6.1793 -10.2511 -0.7343 19 6 6.3817 -11.6011 -0.9392 20 6 7.6443 -12.1447 -0.7858 21 6 8.7114 -11.3389 -0.4319 22 6 8.5212 -9.9868 -0.2303 23 7 7.9702 -7.1094 0.1669 24 7 7.3796 -5.8451 0.2822 25 1 7.8348 -5.0226 0.5214 26 7 5.3033 -3.5432 0.0063 27 7 6.5261 -2.9345 0.0134 28 1 -0.4850 0.8400 -0.0004 29 1 4.8683 -7.7408 -0.5545 30 1 5.1923 -9.8284 -0.8503 31 1 5.5521 -12.2346 -1.2160 32 1 7.7974 -13.2022 -0.9426 33 1 9.6951 -11.7686 -0.3131 34 1 9.3552 -9.3584 0.0457 35 1 6.8536 -2.7700 -0.9267 36 1 6.4996 -2.0758 0.5425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125851359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = 173.935715 kcal Electronic energy + Delta-G solvation = -23201.633573 eV Core-core repulsion = 19621.587883 eV Total energy + Delta-G solvation = -3580.045690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.98056 -42.10258 -39.71641 -37.61389 -34.80930 -34.14550 -32.95400 -31.82183 -30.86066 -30.53695 -30.04799 -28.05215 -24.91353 -24.45885 -24.04432 -23.19356 -21.56566 -20.90126 -20.56889 -19.57873 -18.57297 -18.25745 -17.58901 -17.43518 -17.10879 -16.47466 -16.26495 -15.81182 -15.68064 -15.07084 -14.98152 -14.82837 -14.27438 -14.06906 -13.84037 -13.71178 -13.29204 -13.15613 -13.01731 -12.67911 -12.27512 -12.14764 -12.02267 -11.93082 -11.85479 -11.65807 -11.34663 -11.18061 -10.97357 -10.81519 -9.92310 -9.80059 -9.29837 -9.00972 -8.58116 -6.43681 -0.29388 0.06648 0.13088 0.55622 0.92626 1.01023 1.28831 1.33045 1.42673 1.50247 1.64819 1.94039 2.05128 2.19333 2.77083 2.79288 3.04551 3.32362 3.60774 3.69160 4.01028 4.18297 4.22916 4.26011 4.33655 4.44729 4.61701 4.66397 4.67046 4.85557 5.05005 5.20952 5.31987 5.44529 5.60585 5.64133 5.66215 5.67426 6.04939 6.11378 6.21868 6.28297 6.44243 6.76148 7.39172 8.55532 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.002312 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.152491 B =12105.297988 C =12847.958192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.251 1.251 5 H -0.254 1.254 6 H -0.212 1.212 7 C -0.558 4.558 8 H 0.073 0.927 9 S 0.115 5.885 10 C 0.149 3.851 11 N -0.320 5.320 12 N -0.276 5.276 13 C 0.243 3.757 14 C 0.161 3.839 15 C -0.208 4.208 16 C 0.112 3.888 17 C -0.039 4.039 18 C -0.104 4.104 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.104 4.104 23 N -0.274 5.274 24 N -0.441 5.441 25 H 0.455 0.545 26 N -0.311 5.311 27 N -0.576 5.576 28 H 0.282 0.718 29 H 0.166 0.834 30 H 0.134 0.866 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.127 0.873 35 H 0.380 0.620 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.410 -14.883 -1.681 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.161 4.161 3 Si 0.732 3.268 4 H -0.175 1.175 5 H -0.178 1.178 6 H -0.136 1.136 7 C -0.707 4.707 8 H 0.091 0.909 9 S 0.345 5.655 10 C -0.225 4.225 11 N -0.166 5.166 12 N -0.119 5.119 13 C -0.026 4.026 14 C 0.031 3.969 15 C -0.239 4.239 16 C -0.050 4.050 17 C -0.041 4.041 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.123 4.123 23 N -0.100 5.100 24 N -0.155 5.155 25 H 0.304 0.696 26 N -0.095 5.095 27 N -0.211 5.211 28 H 0.092 0.908 29 H 0.184 0.816 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.200 0.800 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 22.088 -14.886 -1.034 26.656 hybrid contribution -1.322 1.772 -0.450 2.256 sum 20.766 -13.114 -1.484 24.605 Atomic orbital electron populations 1.70051 1.07896 1.29668 1.46585 1.25749 0.95579 1.02622 0.92133 0.85962 0.81163 0.78604 0.81100 1.17472 1.17829 1.13574 1.22534 0.89437 0.98250 1.60446 0.90929 1.81888 1.08808 0.86005 1.88786 1.28178 0.84229 1.04209 1.05865 1.74908 1.25149 0.94214 1.22298 1.74497 1.02189 1.17544 1.17691 1.21619 0.92352 0.80384 1.08214 1.17761 0.83570 0.91344 1.04259 1.21829 1.00294 0.90277 1.11550 1.20750 0.90664 0.94060 0.99575 1.17937 0.95307 0.87344 1.03503 1.21398 0.98505 0.94300 0.98211 1.21413 0.98594 0.94380 0.99777 1.21649 0.92443 1.01270 0.97561 1.21403 1.00596 0.92787 0.99554 1.21352 0.95887 0.96241 0.98823 1.77388 1.20341 0.88403 1.23825 1.46580 1.04386 1.09783 1.54778 0.69594 1.45131 1.02067 1.04790 1.57506 1.59842 1.03326 1.34793 1.23120 0.90770 0.81621 0.84859 0.83355 0.83153 0.83456 0.85547 0.79986 0.78821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.20 13.97 21.61 0.30 -52.90 16 2 C 0.05 2.52 5.49 84.80 0.47 2.99 16 3 Si 0.91 37.27 27.73 68.60 1.90 39.17 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.21 -7.62 6.73 99.48 0.67 -6.95 16 7 C -0.56 -31.23 9.91 67.91 0.67 -30.56 16 8 H 0.07 4.73 7.15 -2.91 -0.02 4.71 16 9 S 0.11 4.82 19.52 -56.49 -1.10 3.72 16 10 C 0.15 6.30 8.13 179.38 1.46 7.75 16 11 N -0.32 -15.81 11.02 -56.53 -0.62 -16.43 16 12 N -0.28 -12.09 12.24 -51.09 -0.63 -12.72 16 13 C 0.24 8.66 8.01 135.95 1.09 9.75 16 14 C 0.16 4.77 7.12 40.66 0.29 5.06 16 15 C -0.21 -5.83 10.18 22.69 0.23 -5.60 16 16 C 0.11 2.91 6.97 42.41 0.30 3.21 16 17 C -0.04 -0.86 5.88 -20.04 -0.12 -0.98 16 18 C -0.10 -1.97 9.57 22.48 0.22 -1.76 16 19 C -0.12 -1.77 10.03 22.24 0.22 -1.55 16 20 C -0.11 -1.38 10.04 22.31 0.22 -1.16 16 21 C -0.13 -1.77 10.03 22.24 0.22 -1.55 16 22 C -0.10 -1.98 9.68 22.48 0.22 -1.76 16 23 N -0.27 -7.17 12.31 -48.40 -0.60 -7.76 16 24 N -0.44 -10.95 7.34 -48.27 -0.35 -11.31 16 25 H 0.46 9.10 7.99 -213.37 -1.70 7.39 16 26 N -0.31 -10.10 3.84 -186.80 -0.72 -10.82 16 27 N -0.58 -11.62 9.36 37.02 0.35 -11.27 16 28 H 0.28 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.17 4.37 7.31 -2.91 -0.02 4.34 16 30 H 0.13 2.33 7.01 -2.91 -0.02 2.31 16 31 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.13 2.36 7.84 -2.91 -0.02 2.34 16 35 H 0.38 5.78 9.21 -210.56 -1.94 3.84 16 36 H 0.39 6.75 8.81 -210.55 -1.85 4.90 16 Total: -1.00 -73.74 337.13 -0.32 -74.06 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -4.34 Total: 22.41 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.49 Total: -16.15 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -2.27 Total: -123.20 kcal Atomic # 14 Polarization: 37.27 SS G_CDS: 1.90 Total: 39.17 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.10 Total: 3.72 kcal Total: -73.74 -0.32 -74.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125851359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.997 kcal (2) G-P(sol) polarization free energy of solvation -73.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds