Wall clock time and date at job start Tue Mar 31 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29319 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47154 * 270.00620 * 3 2 1 5 5 H 1.48498 * 109.46881 * 30.00393 * 3 2 1 6 6 H 1.48496 * 109.47002 * 150.00390 * 3 2 1 7 7 C 1.46790 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.33300 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00375 * 180.02562 * 9 7 2 11 11 O 1.21524 * 119.99557 * 0.02562 * 10 9 7 12 12 C 1.47355 * 120.00484 * 180.02562 * 10 9 7 13 13 C 1.39814 * 120.20323 * 0.27887 * 12 10 9 14 14 C 1.37737 * 119.90024 * 180.29609 * 13 12 10 15 15 N 1.48025 * 119.83825 * 179.67720 * 14 13 12 16 16 O 1.31697 * 119.99757 * 180.02562 * 15 14 13 17 17 O 1.31701 * 119.99744 * 0.02562 * 15 14 13 18 18 C 1.38598 * 120.32311 * 359.70133 * 14 13 12 19 19 C 1.38047 * 120.41138 * 0.02562 * 18 14 13 20 20 C 1.38733 * 120.08873 * 0.02562 * 19 18 14 21 21 O 1.35617 * 120.15654 * 179.97438 * 20 19 18 22 22 C 1.35886 * 118.00011 * 6.22042 * 21 20 19 23 23 C 1.38761 * 120.05645 * 67.64578 * 22 21 20 24 24 C 1.38133 * 119.94258 * 179.97438 * 23 22 21 25 25 C 1.38273 * 120.05571 * 0.02562 * 24 23 22 26 26 C 1.38275 * 120.11572 * 0.27288 * 25 24 23 27 27 C 1.38132 * 120.05809 * 359.44849 * 26 25 24 28 28 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00078 * 0.02562 * 9 7 2 30 30 H 1.07997 * 120.04601 * 359.97438 * 13 12 10 31 31 H 1.07996 * 119.79472 * 179.97438 * 18 14 13 32 32 H 1.07997 * 119.95314 * 180.02562 * 19 18 14 33 33 H 1.08001 * 120.02677 * 359.95439 * 23 22 21 34 34 H 1.07995 * 119.97321 * 180.02562 * 24 23 22 35 35 H 1.07995 * 119.93987 * 179.97438 * 25 24 23 36 36 H 1.08000 * 119.96793 * 179.72379 * 26 25 24 37 37 H 1.08001 * 120.02672 * 180.25430 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6178 0.0000 4 1 2.4745 2.0465 -1.4000 5 1 1.4246 2.6526 0.7001 6 1 3.5247 1.4402 0.6999 7 6 2.0271 -1.2712 -0.0006 8 1 3.1071 -1.2712 -0.0010 9 7 1.3607 -2.4257 -0.0006 10 6 2.0345 -3.5929 -0.0006 11 8 3.2498 -3.5928 -0.0001 12 6 1.2978 -4.8691 -0.0011 13 6 -0.1003 -4.8741 -0.0076 14 6 -0.7826 -6.0706 -0.0019 15 7 -2.2629 -6.0743 -0.0015 16 8 -2.9185 -7.2164 0.0045 17 8 -2.9242 -4.9353 -0.0070 18 6 -0.0900 -7.2711 0.0039 19 6 1.2904 -7.2814 0.0046 20 6 1.9949 -6.0863 0.0001 21 8 3.3511 -6.0949 0.0013 22 6 3.9816 -7.2922 -0.1230 23 6 3.9011 -7.9997 -1.3139 24 6 4.5434 -9.2163 -1.4378 25 6 5.2656 -9.7295 -0.3762 26 6 5.3422 -9.0293 0.8137 27 6 4.7066 -7.8095 0.9409 28 1 -0.4850 0.8400 0.0004 29 1 0.3906 -2.4257 -0.0006 30 1 -0.6444 -3.9412 -0.0117 31 1 -0.6337 -8.2042 0.0088 32 1 1.8226 -8.2212 0.0088 33 1 3.3365 -7.5996 -2.1432 34 1 4.4815 -9.7672 -2.3646 35 1 5.7667 -10.6810 -0.4750 36 1 5.9033 -9.4344 1.6429 37 1 4.7702 -7.2612 1.8692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126744347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:36 Heat of formation + Delta-G solvation = 25.120621 kcal Electronic energy + Delta-G solvation = -26655.303058 eV Core-core repulsion = 22561.465888 eV Total energy + Delta-G solvation = -4093.837170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.24791 -39.63422 -38.57371 -37.89442 -36.94095 -34.27813 -34.18428 -32.17174 -31.45472 -31.34108 -30.98925 -29.93689 -26.24265 -25.40824 -23.78135 -23.12815 -22.83597 -21.54059 -20.08286 -19.03680 -18.59382 -18.01868 -17.81651 -16.88053 -16.23074 -16.13860 -15.97489 -15.71459 -15.03055 -14.91624 -14.60720 -14.23259 -14.12356 -13.71706 -13.69819 -13.36594 -13.15242 -12.77590 -12.57891 -12.14585 -12.11646 -12.00692 -11.53609 -11.35860 -11.13461 -11.09359 -10.91206 -10.68677 -10.46262 -10.44161 -9.88998 -9.35171 -9.23080 -9.06743 -8.56978 -8.54649 -8.47742 -7.01470 -3.86152 -0.45218 0.74510 0.85729 1.08418 1.30239 1.36530 2.87610 2.93640 3.03922 3.07785 3.13335 3.54631 3.82722 4.08499 4.31078 4.44268 4.63834 4.65853 4.67723 4.76021 4.85368 4.97399 5.02627 5.11322 5.23938 5.27675 5.40943 5.62651 5.70007 5.73236 5.78724 5.98095 6.07383 6.14076 6.19244 6.21652 6.33913 6.57262 6.85420 7.00873 7.45253 7.66931 8.15174 8.83807 9.15307 9.88702 10.12319 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.004271 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.135807 B = 6554.041532 C = 9333.821638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.315 4.315 8 H 0.120 0.880 9 N -0.505 5.505 10 C 0.425 3.575 11 O -0.586 6.586 12 C -0.108 4.108 13 C -0.025 4.025 14 C -0.033 4.033 15 N -0.006 5.006 16 O -0.194 6.194 17 O -0.174 6.174 18 C -0.030 4.030 19 C -0.203 4.203 20 C 0.209 3.791 21 O -0.199 6.199 22 C 0.079 3.921 23 C -0.139 4.139 24 C -0.105 4.105 25 C -0.124 4.124 26 C -0.105 4.105 27 C -0.117 4.117 28 H 0.291 0.709 29 H 0.390 0.610 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -15.682 -0.299 16.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.181 4.181 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.446 4.446 8 H 0.137 0.863 9 N -0.134 5.134 10 C 0.217 3.783 11 O -0.474 6.474 12 C -0.114 4.114 13 C -0.047 4.047 14 C -0.121 4.121 15 N 0.469 4.531 16 O -0.383 6.383 17 O -0.368 6.368 18 C -0.051 4.051 19 C -0.223 4.223 20 C 0.160 3.840 21 O -0.107 6.107 22 C 0.037 3.963 23 C -0.158 4.158 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.123 4.123 27 C -0.136 4.136 28 H 0.103 0.897 29 H 0.224 0.776 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.472 -15.275 -0.274 16.592 hybrid contribution -0.857 0.675 -0.084 1.094 sum 5.615 -14.600 -0.358 15.646 Atomic orbital electron populations 1.68641 1.07962 1.30911 1.38838 1.27083 0.95093 1.00733 0.95162 0.85679 0.79850 0.78754 0.79228 1.19541 1.20253 1.18395 1.20909 0.94011 0.81603 1.48065 0.86259 1.41012 1.09513 1.05277 1.57598 1.16845 0.87564 0.82058 0.91883 1.90653 1.11987 1.85521 1.59252 1.19796 0.90833 0.94225 1.06557 1.21085 0.92856 0.97585 0.93159 1.20067 0.76334 0.96596 1.19067 1.50412 1.04637 1.02535 0.95492 1.96222 1.70415 1.15048 1.56654 1.96304 1.69811 1.15039 1.55641 1.20684 0.93496 0.96845 0.94042 1.21168 0.93503 0.97818 1.09796 1.19440 0.82264 0.92827 0.89457 1.84816 1.15223 1.26759 1.83914 1.18977 0.97323 0.85991 0.94004 1.21556 1.01505 0.95554 0.97146 1.21045 0.96891 0.95153 0.99196 1.21249 0.99242 1.00334 0.93369 1.21069 0.99021 0.94071 0.98098 1.21252 0.98774 0.95433 0.98107 0.89722 0.77571 0.82090 0.82880 0.83182 0.85045 0.85276 0.85540 0.85116 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.15 13.09 56.00 0.73 -19.42 16 2 C 0.03 0.81 5.70 -15.15 -0.09 0.72 16 3 Si 0.94 18.69 29.65 -169.99 -5.04 13.65 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.31 -8.14 9.92 -13.46 -0.13 -8.27 16 8 H 0.12 3.24 7.19 -52.49 -0.38 2.87 16 9 N -0.50 -12.30 5.12 -10.71 -0.05 -12.36 16 10 C 0.42 10.15 7.69 -12.55 -0.10 10.05 16 11 O -0.59 -15.88 14.68 -16.53 -0.24 -16.12 16 12 C -0.11 -2.10 5.89 -104.84 -0.62 -2.71 16 13 C -0.03 -0.44 9.06 -39.18 -0.35 -0.80 16 14 C -0.03 -0.55 6.88 -79.99 -0.55 -1.10 16 15 N -0.01 -0.11 4.98 33.94 0.17 0.06 16 16 O -0.19 -3.42 19.14 -31.57 -0.60 -4.02 16 17 O -0.17 -3.39 19.13 -31.57 -0.60 -3.99 16 18 C -0.03 -0.40 9.56 -39.52 -0.38 -0.78 16 19 C -0.20 -2.73 8.79 -39.47 -0.35 -3.07 16 20 C 0.21 3.56 6.55 -38.63 -0.25 3.31 16 21 O -0.20 -3.60 8.07 -24.57 -0.20 -3.80 16 22 C 0.08 1.11 4.71 -39.20 -0.18 0.93 16 23 C -0.14 -1.62 8.38 -39.43 -0.33 -1.95 16 24 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 25 C -0.12 -1.02 10.04 -39.55 -0.40 -1.41 16 26 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 27 C -0.12 -1.39 9.99 -39.43 -0.39 -1.78 16 28 H 0.29 6.49 8.26 -40.82 -0.34 6.15 16 29 H 0.39 8.99 6.01 -40.82 -0.25 8.74 16 30 H 0.16 2.89 5.90 -52.49 -0.31 2.58 16 31 H 0.15 1.71 7.56 -52.49 -0.40 1.31 16 32 H 0.15 1.65 6.21 -52.49 -0.33 1.33 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -30.26 339.85 -8.54 -38.80 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -2.90 Total: 11.64 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -4.92 Total: -9.56 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.85 Total: -31.72 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.65 Total: -27.93 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.04 Total: 13.65 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.26 -8.54 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126744347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.922 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds