Wall clock time and date at job start Tue Mar 31 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29319 * 1 3 3 Si 1.86803 * 119.99878 * 2 1 4 4 H 1.48497 * 109.47154 * 270.00620 * 3 2 1 5 5 H 1.48498 * 109.46881 * 30.00393 * 3 2 1 6 6 H 1.48496 * 109.47002 * 150.00390 * 3 2 1 7 7 C 1.46790 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99593 * 179.97438 * 7 2 1 9 9 N 1.33300 * 120.00190 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00375 * 180.02562 * 9 7 2 11 11 O 1.21524 * 119.99557 * 0.02562 * 10 9 7 12 12 C 1.47355 * 120.00484 * 180.02562 * 10 9 7 13 13 C 1.39814 * 120.20323 * 0.27887 * 12 10 9 14 14 C 1.37737 * 119.90024 * 180.29609 * 13 12 10 15 15 N 1.48025 * 119.83825 * 179.67720 * 14 13 12 16 16 O 1.31697 * 119.99757 * 180.02562 * 15 14 13 17 17 O 1.31701 * 119.99744 * 0.02562 * 15 14 13 18 18 C 1.38598 * 120.32311 * 359.70133 * 14 13 12 19 19 C 1.38047 * 120.41138 * 0.02562 * 18 14 13 20 20 C 1.38733 * 120.08873 * 0.02562 * 19 18 14 21 21 O 1.35617 * 120.15654 * 179.97438 * 20 19 18 22 22 C 1.35886 * 118.00011 * 6.22042 * 21 20 19 23 23 C 1.38761 * 120.05645 * 67.64578 * 22 21 20 24 24 C 1.38133 * 119.94258 * 179.97438 * 23 22 21 25 25 C 1.38273 * 120.05571 * 0.02562 * 24 23 22 26 26 C 1.38275 * 120.11572 * 0.27288 * 25 24 23 27 27 C 1.38132 * 120.05809 * 359.44849 * 26 25 24 28 28 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00078 * 0.02562 * 9 7 2 30 30 H 1.07997 * 120.04601 * 359.97438 * 13 12 10 31 31 H 1.07996 * 119.79472 * 179.97438 * 18 14 13 32 32 H 1.07997 * 119.95314 * 180.02562 * 19 18 14 33 33 H 1.08001 * 120.02677 * 359.95439 * 23 22 21 34 34 H 1.07995 * 119.97321 * 180.02562 * 24 23 22 35 35 H 1.07995 * 119.93987 * 179.97438 * 25 24 23 36 36 H 1.08000 * 119.96793 * 179.72379 * 26 25 24 37 37 H 1.08001 * 120.02672 * 180.25430 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6178 0.0000 4 1 2.4745 2.0465 -1.4000 5 1 1.4246 2.6526 0.7001 6 1 3.5247 1.4402 0.6999 7 6 2.0271 -1.2712 -0.0006 8 1 3.1071 -1.2712 -0.0010 9 7 1.3607 -2.4257 -0.0006 10 6 2.0345 -3.5929 -0.0006 11 8 3.2498 -3.5928 -0.0001 12 6 1.2978 -4.8691 -0.0011 13 6 -0.1003 -4.8741 -0.0076 14 6 -0.7826 -6.0706 -0.0019 15 7 -2.2629 -6.0743 -0.0015 16 8 -2.9185 -7.2164 0.0045 17 8 -2.9242 -4.9353 -0.0070 18 6 -0.0900 -7.2711 0.0039 19 6 1.2904 -7.2814 0.0046 20 6 1.9949 -6.0863 0.0001 21 8 3.3511 -6.0949 0.0013 22 6 3.9816 -7.2922 -0.1230 23 6 3.9011 -7.9997 -1.3139 24 6 4.5434 -9.2163 -1.4378 25 6 5.2656 -9.7295 -0.3762 26 6 5.3422 -9.0293 0.8137 27 6 4.7066 -7.8095 0.9409 28 1 -0.4850 0.8400 0.0004 29 1 0.3906 -2.4257 -0.0006 30 1 -0.6444 -3.9412 -0.0117 31 1 -0.6337 -8.2042 0.0088 32 1 1.8226 -8.2212 0.0088 33 1 3.3365 -7.5996 -2.1432 34 1 4.4815 -9.7672 -2.3646 35 1 5.7667 -10.6810 -0.4750 36 1 5.9033 -9.4344 1.6429 37 1 4.7702 -7.2612 1.8692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126744347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:35 Heat of formation + Delta-G solvation = 8.250591 kcal Electronic energy + Delta-G solvation = -26656.034598 eV Core-core repulsion = 22561.465888 eV Total energy + Delta-G solvation = -4094.568710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.52015 -40.91933 -40.15520 -39.16430 -38.27440 -36.15602 -35.61935 -33.97485 -32.85005 -32.50830 -31.96089 -30.92560 -27.61687 -27.17383 -25.12792 -24.34741 -23.70674 -22.67991 -21.72109 -20.65979 -19.90464 -19.56860 -19.25116 -17.87655 -17.75566 -17.31425 -17.16877 -17.03406 -16.75612 -16.21172 -15.91159 -15.67130 -15.56097 -14.94143 -14.68432 -14.57479 -14.43009 -14.37914 -13.83264 -13.67313 -13.35211 -13.05416 -13.00378 -12.60015 -12.52774 -12.40087 -12.32414 -12.11604 -11.98198 -11.92374 -11.67450 -10.68345 -10.51354 -10.43104 -10.20228 -10.02207 -9.61768 -8.79215 -5.85653 -1.86900 -0.60069 -0.15982 -0.03931 0.09653 0.31419 1.30143 1.38414 1.50399 1.67992 1.82976 2.19127 2.35652 2.70584 2.78379 3.10099 3.16407 3.26808 3.41603 3.59466 3.88446 3.90643 3.95681 4.15472 4.21663 4.30845 4.41057 4.41660 4.47767 4.56634 4.63019 4.67691 5.00904 5.05178 5.05315 5.33552 5.37215 5.48370 5.56045 5.70701 5.79877 6.31031 6.35653 6.96634 7.31683 8.01494 8.35336 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.004271 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.135807 B = 6554.041532 C = 9333.821638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.007 3.993 3 Si 1.004 2.996 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.517 5.517 10 C 0.429 3.571 11 O -0.622 6.622 12 C -0.140 4.140 13 C -0.008 4.008 14 C -0.048 4.048 15 N -0.003 5.003 16 O -0.148 6.148 17 O -0.242 6.242 18 C 0.014 3.986 19 C -0.182 4.182 20 C 0.218 3.782 21 O -0.231 6.231 22 C 0.037 3.963 23 C -0.148 4.148 24 C -0.098 4.098 25 C -0.110 4.110 26 C -0.098 4.098 27 C -0.132 4.132 28 H 0.298 0.702 29 H 0.392 0.608 30 H 0.149 0.851 31 H 0.198 0.802 32 H 0.187 0.813 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.616 -20.633 -0.583 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.204 4.204 3 Si 0.824 3.176 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.508 4.508 8 H 0.108 0.892 9 N -0.148 5.148 10 C 0.220 3.780 11 O -0.513 6.513 12 C -0.145 4.145 13 C -0.029 4.029 14 C -0.136 4.136 15 N 0.470 4.530 16 O -0.352 6.352 17 O -0.418 6.418 18 C -0.006 4.006 19 C -0.201 4.201 20 C 0.169 3.831 21 O -0.139 6.139 22 C -0.004 4.004 23 C -0.167 4.167 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.116 4.116 27 C -0.150 4.150 28 H 0.110 0.890 29 H 0.226 0.774 30 H 0.167 0.833 31 H 0.215 0.785 32 H 0.205 0.795 33 H 0.145 0.855 34 H 0.177 0.823 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.962 -20.086 -0.560 21.266 hybrid contribution -0.895 1.486 0.001 1.735 sum 6.067 -18.600 -0.559 19.572 Atomic orbital electron populations 1.68672 1.08845 1.31959 1.40030 1.27814 0.95884 1.02861 0.93891 0.84796 0.78319 0.75065 0.79373 1.18867 1.18540 1.19184 1.20668 0.93061 0.83261 1.53826 0.89175 1.40896 1.09348 1.05194 1.59325 1.17538 0.87428 0.83365 0.89659 1.90595 1.13950 1.86725 1.59992 1.19424 0.91463 0.93285 1.10347 1.20916 0.92168 0.98292 0.91528 1.20141 0.75824 0.97013 1.20625 1.50499 1.04984 1.02353 0.95130 1.96182 1.70695 1.14887 1.53487 1.96348 1.70150 1.15267 1.60053 1.21238 0.93352 0.97113 0.88853 1.21463 0.93241 0.97618 1.07796 1.19722 0.82932 0.93075 0.87334 1.84809 1.15557 1.30047 1.83510 1.19360 0.99202 0.85805 0.96041 1.21615 1.02477 0.96543 0.96026 1.21422 0.95545 0.93899 1.00678 1.21732 0.97613 1.01181 0.92205 1.21428 0.98012 0.92597 0.99577 1.21367 0.99390 0.96757 0.97523 0.89033 0.77360 0.83309 0.78535 0.79549 0.85457 0.82265 0.81822 0.82275 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.28 13.09 23.26 0.30 -43.98 16 2 C 0.01 0.35 5.70 87.30 0.50 0.85 16 3 Si 1.00 40.35 29.65 68.60 2.03 42.39 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 7 C -0.38 -21.39 9.92 86.71 0.86 -20.53 16 8 H 0.09 5.45 7.19 -2.91 -0.02 5.43 16 9 N -0.52 -27.57 5.12 -306.10 -1.57 -29.13 16 10 C 0.43 22.11 7.69 86.64 0.67 22.78 16 11 O -0.62 -36.37 14.68 17.12 0.25 -36.12 16 12 C -0.14 -5.64 5.89 -20.00 -0.12 -5.76 16 13 C -0.01 -0.28 9.06 22.53 0.20 -0.07 16 14 C -0.05 -1.49 6.88 36.34 0.25 -1.24 16 15 N 0.00 -0.10 4.98 -46.53 -0.23 -0.33 16 16 O -0.15 -4.65 19.14 3.52 0.07 -4.59 16 17 O -0.24 -9.66 19.13 3.51 0.07 -9.60 16 18 C 0.01 0.32 9.56 22.31 0.21 0.53 16 19 C -0.18 -4.24 8.79 22.34 0.20 -4.05 16 20 C 0.22 7.37 6.55 22.88 0.15 7.52 16 21 O -0.23 -8.51 8.07 -11.66 -0.09 -8.61 16 22 C 0.04 1.00 4.71 22.52 0.11 1.10 16 23 C -0.15 -3.07 8.38 22.37 0.19 -2.89 16 24 C -0.10 -1.30 10.04 22.25 0.22 -1.08 16 25 C -0.11 -1.21 10.04 22.29 0.22 -0.98 16 26 C -0.10 -1.38 10.04 22.25 0.22 -1.16 16 27 C -0.13 -2.91 9.99 22.37 0.22 -2.68 16 28 H 0.30 13.88 8.26 -92.71 -0.77 13.11 16 29 H 0.39 19.87 6.01 -92.71 -0.56 19.31 16 30 H 0.15 5.78 5.90 -2.91 -0.02 5.76 16 31 H 0.20 2.94 7.56 -2.91 -0.02 2.91 16 32 H 0.19 3.15 6.21 -2.91 -0.02 3.13 16 33 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 36 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -73.67 339.85 5.54 -68.13 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.60 Total: 29.50 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.11 Total: -7.67 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.49 Total: -73.44 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: 0.29 Total: -58.91 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.39 kcal Total: -73.67 5.54 -68.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126744347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.377 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds