Wall clock time and date at job start Tue Mar 31 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46598 * 239.99822 * 3 2 1 5 5 H 1.48492 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46971 * 120.00458 * 3 2 1 7 7 C 1.37880 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46980 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47067 * 180.02562 * 10 9 7 12 12 C 1.46954 * 110.99947 * 190.00041 * 11 10 9 13 13 C 1.53042 * 109.36737 * 183.18653 * 12 11 10 14 14 N 1.46961 * 109.36454 * 301.60061 * 13 12 11 15 15 C 1.39741 * 111.00002 * 183.18564 * 14 13 12 16 16 C 1.38928 * 120.05588 * 359.95843 * 15 14 13 17 17 C 1.38098 * 119.95985 * 180.02562 * 16 15 14 18 18 C 1.38370 * 120.07662 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.94196 * 180.02562 * 18 17 16 20 20 C 1.38470 * 120.11346 * 0.02562 * 18 17 16 21 21 Cl 1.73607 * 119.98416 * 179.97438 * 20 18 17 22 22 C 1.38245 * 120.03747 * 359.95769 * 20 18 17 23 23 C 1.46954 * 110.88038 * 59.31694 * 14 13 12 24 24 C 1.46958 * 110.99673 * 313.79566 * 11 10 9 25 25 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47449 * 59.99543 * 9 7 2 27 27 H 1.09001 * 109.47354 * 299.99798 * 9 7 2 28 28 H 1.08999 * 109.46849 * 59.99905 * 10 9 7 29 29 H 1.09001 * 109.47049 * 300.00152 * 10 9 7 30 30 H 1.09004 * 109.48853 * 63.21524 * 12 11 10 31 31 H 1.08998 * 109.50794 * 303.17071 * 12 11 10 32 32 H 1.08994 * 109.49214 * 181.63099 * 13 12 11 33 33 H 1.09003 * 109.50817 * 61.57414 * 13 12 11 34 34 H 1.08000 * 120.01682 * 0.03530 * 16 15 14 35 35 H 1.07998 * 119.95713 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.03702 * 179.75087 * 22 20 18 37 37 H 1.09001 * 109.49102 * 60.64799 * 23 14 13 38 38 H 1.08999 * 109.48619 * 180.71283 * 23 14 13 39 39 H 1.08997 * 109.49395 * 296.78179 * 24 11 10 40 40 H 1.09002 * 109.48654 * 56.85070 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 2.4176 -6.0660 0.2381 13 6 1.6293 -7.3749 0.1510 14 7 0.5433 -7.3565 1.1409 15 6 -0.1554 -8.5667 1.1403 16 6 0.2173 -9.5849 0.2717 17 6 -0.4749 -10.7798 0.2724 18 6 -1.5395 -10.9641 1.1369 19 17 -2.4067 -12.4680 1.1354 20 6 -1.9142 -9.9510 2.0033 21 17 -3.2508 -10.1855 3.0861 22 6 -1.2244 -8.7529 2.0068 23 6 -0.3634 -6.2248 0.9027 24 6 0.4249 -4.9158 0.9899 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 2.8614 -5.9739 1.2295 31 1 3.2060 -6.0654 -0.5145 32 1 2.2940 -8.2140 0.3560 33 1 1.2082 -7.4803 -0.8488 34 1 1.0479 -9.4419 -0.4036 35 1 -0.1849 -11.5715 -0.4026 36 1 -1.5192 -7.9613 2.6796 37 1 -0.8072 -6.3167 -0.0887 38 1 -1.1515 -6.2255 1.6557 39 1 0.8460 -4.8108 1.9897 40 1 -0.2398 -4.0767 0.7848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147508610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:48 Heat of formation + Delta-G solvation = 25.848490 kcal Electronic energy + Delta-G solvation = -22752.170464 eV Core-core repulsion = 19232.474266 eV Total energy + Delta-G solvation = -3519.696198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.67343 -38.63471 -36.92195 -36.75852 -35.42508 -33.06698 -31.83442 -30.69705 -30.60450 -28.85052 -26.27942 -24.51488 -23.76467 -22.44374 -22.08377 -20.44760 -19.49041 -18.20141 -16.71038 -16.40616 -16.19121 -15.49297 -15.02907 -14.77366 -14.58025 -14.44501 -14.27084 -14.14727 -14.06750 -13.80275 -12.85380 -12.48545 -12.42490 -12.15872 -12.13082 -11.92318 -11.62939 -11.40110 -11.31942 -11.23884 -11.10969 -10.97943 -10.89123 -10.65016 -10.56197 -10.01695 -9.79066 -9.39149 -9.20603 -9.17192 -8.39777 -8.09601 -7.85183 -6.05598 -4.08188 0.68398 0.81265 1.59429 1.95912 3.06802 3.30106 3.34872 3.36934 3.57228 4.26252 4.30826 4.45973 4.68074 4.70744 4.82793 4.95739 5.05483 5.18513 5.30769 5.31269 5.35358 5.46599 5.48087 5.60663 5.65052 5.73915 5.81887 5.95740 6.02061 6.12324 6.22205 6.35061 6.37892 6.73937 6.83644 6.91671 7.36698 7.47056 7.66450 7.77359 7.97001 8.36066 8.97910 9.55936 11.05718 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.002226 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.882103 B =12577.557398 C =13335.288184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.542 5.542 12 C 0.054 3.946 13 C 0.053 3.947 14 N -0.488 5.488 15 C 0.142 3.858 16 C -0.160 4.160 17 C -0.069 4.069 18 C -0.066 4.066 19 Cl -0.059 7.059 20 C -0.002 4.002 21 Cl -0.050 7.050 22 C -0.126 4.126 23 C 0.060 3.940 24 C 0.052 3.948 25 H 0.262 0.738 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.022 0.978 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 -24.002 2.314 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.267 5.267 12 C -0.075 4.075 13 C -0.073 4.073 14 N -0.202 5.202 15 C 0.042 3.958 16 C -0.181 4.181 17 C -0.089 4.089 18 C -0.094 4.094 19 Cl -0.030 7.030 20 C -0.030 4.030 21 Cl -0.021 7.021 22 C -0.147 4.147 23 C -0.064 4.064 24 C -0.077 4.077 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.829 -23.912 2.403 24.199 hybrid contribution 0.408 0.783 0.297 0.932 sum -2.420 -23.129 2.699 23.411 Atomic orbital electron populations 1.69941 1.06029 1.26828 1.50459 1.24988 0.94850 0.99227 0.95184 0.86641 0.79581 0.83058 0.78628 1.20202 1.21253 1.20266 1.21125 0.92981 0.90955 1.51163 0.92779 1.19231 0.94086 0.90520 0.97740 1.22332 0.97049 0.87775 0.99214 1.62327 1.11883 1.03959 1.48500 1.22148 0.94989 0.89966 1.00425 1.22428 0.92624 0.98831 0.93453 1.59202 1.11644 1.01376 1.48013 1.18991 0.91837 0.91921 0.93067 1.21415 1.02971 0.93847 0.99863 1.20857 0.93039 0.97837 0.97119 1.20606 0.98525 0.88769 1.01523 1.98373 1.75878 1.30787 1.97996 1.20533 0.93016 0.94591 0.94883 1.98393 1.44284 1.96939 1.62512 1.20630 0.96441 0.96578 1.01077 1.22471 0.94058 0.88643 1.01267 1.22300 0.94794 0.96288 0.94282 0.92863 0.95713 0.96175 0.95954 0.91760 0.94265 0.90077 0.89853 0.92363 0.83897 0.84093 0.83679 0.92511 0.89753 0.94186 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.53 4.23 -27.88 -0.12 0.41 16 10 C 0.06 1.26 5.22 -3.82 -0.02 1.24 16 11 N -0.54 -9.12 4.86 -234.47 -1.14 -10.26 16 12 C 0.05 0.72 5.58 -3.77 -0.02 0.70 16 13 C 0.05 0.59 4.30 -3.77 -0.02 0.57 16 14 N -0.49 -5.84 4.76 -170.95 -0.81 -6.65 16 15 C 0.14 1.54 5.64 -83.77 -0.47 1.06 16 16 C -0.16 -1.47 8.82 -39.38 -0.35 -1.82 16 17 C -0.07 -0.60 9.82 -39.58 -0.39 -0.99 16 18 C -0.07 -0.66 6.32 -39.45 -0.25 -0.91 16 19 Cl -0.06 -0.56 27.95 -51.86 -1.45 -2.01 16 20 C 0.00 -0.02 6.32 -39.49 -0.25 -0.27 16 21 Cl -0.05 -0.52 27.95 -51.86 -1.45 -1.97 16 22 C -0.13 -1.35 8.98 -39.35 -0.35 -1.70 16 23 C 0.06 0.78 5.38 -3.77 -0.02 0.76 16 24 C 0.05 0.83 4.93 -3.77 -0.02 0.81 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.52 6.26 -51.93 -0.33 0.19 16 28 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 33 H 0.06 0.64 7.58 -51.93 -0.39 0.25 16 34 H 0.14 1.08 5.81 -52.49 -0.30 0.78 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.15 1.47 7.17 -52.49 -0.38 1.10 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.98 6.81 -51.93 -0.35 0.62 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.90 5.99 -51.93 -0.31 1.59 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -28.95 347.60 -11.94 -40.89 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -5.36 Total: -2.73 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.69 Total: -13.29 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -1.22 Total: -42.37 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.90 Total: -3.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.95 -11.94 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147508610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.739 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds