Wall clock time and date at job start Tue Mar 31 2020 14:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99605 * 2 1 4 4 H 1.48497 * 109.46598 * 239.99822 * 3 2 1 5 5 H 1.48492 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46971 * 120.00458 * 3 2 1 7 7 C 1.37880 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00069 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46980 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47067 * 180.02562 * 10 9 7 12 12 C 1.46954 * 110.99947 * 190.00041 * 11 10 9 13 13 C 1.53042 * 109.36737 * 183.18653 * 12 11 10 14 14 N 1.46961 * 109.36454 * 301.60061 * 13 12 11 15 15 C 1.39741 * 111.00002 * 183.18564 * 14 13 12 16 16 C 1.38928 * 120.05588 * 359.95843 * 15 14 13 17 17 C 1.38098 * 119.95985 * 180.02562 * 16 15 14 18 18 C 1.38370 * 120.07662 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.94196 * 180.02562 * 18 17 16 20 20 C 1.38470 * 120.11346 * 0.02562 * 18 17 16 21 21 Cl 1.73607 * 119.98416 * 179.97438 * 20 18 17 22 22 C 1.38245 * 120.03747 * 359.95769 * 20 18 17 23 23 C 1.46954 * 110.88038 * 59.31694 * 14 13 12 24 24 C 1.46958 * 110.99673 * 313.79566 * 11 10 9 25 25 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47449 * 59.99543 * 9 7 2 27 27 H 1.09001 * 109.47354 * 299.99798 * 9 7 2 28 28 H 1.08999 * 109.46849 * 59.99905 * 10 9 7 29 29 H 1.09001 * 109.47049 * 300.00152 * 10 9 7 30 30 H 1.09004 * 109.48853 * 63.21524 * 12 11 10 31 31 H 1.08998 * 109.50794 * 303.17071 * 12 11 10 32 32 H 1.08994 * 109.49214 * 181.63099 * 13 12 11 33 33 H 1.09003 * 109.50817 * 61.57414 * 13 12 11 34 34 H 1.08000 * 120.01682 * 0.03530 * 16 15 14 35 35 H 1.07998 * 119.95713 * 180.02562 * 17 16 15 36 36 H 1.07998 * 120.03702 * 179.75087 * 22 20 18 37 37 H 1.09001 * 109.49102 * 60.64799 * 23 14 13 38 38 H 1.08999 * 109.48619 * 180.71283 * 23 14 13 39 39 H 1.08997 * 109.49395 * 296.78179 * 24 11 10 40 40 H 1.09002 * 109.48654 * 56.85070 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9343 -0.0001 12 6 2.4176 -6.0660 0.2381 13 6 1.6293 -7.3749 0.1510 14 7 0.5433 -7.3565 1.1409 15 6 -0.1554 -8.5667 1.1403 16 6 0.2173 -9.5849 0.2717 17 6 -0.4749 -10.7798 0.2724 18 6 -1.5395 -10.9641 1.1369 19 17 -2.4067 -12.4680 1.1354 20 6 -1.9142 -9.9510 2.0033 21 17 -3.2508 -10.1855 3.0861 22 6 -1.2244 -8.7529 2.0068 23 6 -0.3634 -6.2248 0.9027 24 6 0.4249 -4.9158 0.9899 25 1 -0.4850 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5568 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 2.8614 -5.9739 1.2295 31 1 3.2060 -6.0654 -0.5145 32 1 2.2940 -8.2140 0.3560 33 1 1.2082 -7.4803 -0.8488 34 1 1.0479 -9.4419 -0.4036 35 1 -0.1849 -11.5715 -0.4026 36 1 -1.5192 -7.9613 2.6796 37 1 -0.8072 -6.3167 -0.0887 38 1 -1.1515 -6.2255 1.6557 39 1 0.8460 -4.8108 1.9897 40 1 -0.2398 -4.0767 0.7848 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147508610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:48 Heat of formation + Delta-G solvation = 9.285823 kcal Electronic energy + Delta-G solvation = -22752.888675 eV Core-core repulsion = 19232.474266 eV Total energy + Delta-G solvation = -3520.414409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55902 -39.65258 -37.86420 -37.52429 -36.54205 -34.99536 -32.77259 -32.12347 -31.55733 -30.13165 -27.63875 -25.79619 -25.18370 -23.47127 -22.99935 -21.88571 -20.73897 -19.06517 -18.54929 -17.33411 -17.15290 -16.60521 -16.39069 -16.05119 -15.95439 -15.58606 -15.47239 -15.16199 -14.93609 -14.86873 -14.20293 -14.16838 -13.44491 -13.30388 -13.12985 -12.90550 -12.88965 -12.83445 -12.57898 -12.40898 -12.32260 -12.20045 -12.05519 -11.92318 -11.84854 -11.76479 -11.24639 -11.17191 -10.62225 -10.53744 -9.96216 -9.25135 -8.92870 -8.20243 -6.31026 -0.09182 0.06824 0.82514 1.20293 1.40826 1.43295 1.51200 2.27708 2.40355 2.70827 3.01747 3.13527 3.58173 3.75354 3.96277 3.99522 4.01688 4.14885 4.22601 4.28105 4.35824 4.46437 4.58091 4.62678 4.65542 4.71159 4.74884 4.87729 4.92418 4.99525 5.02143 5.05695 5.08564 5.34436 5.44847 5.64594 5.77258 5.79029 6.00402 6.11185 6.25202 6.30927 6.85359 7.38000 8.91315 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.027155 B = 0.002226 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.882103 B =12577.557398 C =13335.288184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.079 3.921 11 N -0.548 5.548 12 C 0.052 3.948 13 C 0.057 3.943 14 N -0.495 5.495 15 C 0.128 3.872 16 C -0.152 4.152 17 C -0.064 4.064 18 C -0.072 4.072 19 Cl -0.057 7.057 20 C -0.013 4.013 21 Cl -0.054 7.054 22 C -0.132 4.132 23 C 0.072 3.928 24 C 0.056 3.944 25 H 0.264 0.736 26 H -0.006 1.006 27 H 0.001 0.999 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.144 0.856 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -25.469 1.786 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.048 4.048 11 N -0.273 5.273 12 C -0.076 4.076 13 C -0.069 4.069 14 N -0.210 5.210 15 C 0.029 3.971 16 C -0.173 4.173 17 C -0.083 4.083 18 C -0.100 4.100 19 Cl -0.028 7.028 20 C -0.041 4.041 21 Cl -0.025 7.025 22 C -0.154 4.154 23 C -0.053 4.053 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.019 0.981 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.182 0.818 35 H 0.185 0.815 36 H 0.161 0.839 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.401 -25.413 1.878 25.521 hybrid contribution -0.074 1.156 0.462 1.247 sum -1.475 -24.257 2.340 24.414 Atomic orbital electron populations 1.70080 1.07716 1.27834 1.51383 1.25924 0.95739 1.03200 0.94673 0.85525 0.78293 0.78219 0.79162 1.19142 1.20930 1.19274 1.21596 0.93536 0.92310 1.50933 0.92220 1.19047 0.94306 0.92049 0.95285 1.21977 0.95731 0.87935 0.99201 1.62284 1.12429 1.03595 1.48960 1.22279 0.95093 0.89571 1.00640 1.22476 0.92584 0.98203 0.93623 1.59166 1.11715 1.01389 1.48698 1.19027 0.92283 0.91795 0.93964 1.21650 1.03148 0.93234 0.99262 1.21153 0.92091 0.98301 0.96774 1.20813 0.98897 0.88728 1.01582 1.98376 1.75912 1.30508 1.97979 1.20620 0.93229 0.94923 0.95353 1.98389 1.44452 1.96941 1.62685 1.20669 0.96714 0.96706 1.01268 1.22262 0.93931 0.87663 1.01453 1.22149 0.94381 0.97224 0.93447 0.92763 0.98761 0.98091 0.96170 0.91411 0.94787 0.88491 0.86878 0.91786 0.81783 0.81526 0.83864 0.92902 0.88713 0.95213 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 43.69 29.54 68.60 2.03 45.72 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.03 1.57 4.23 29.85 0.13 1.69 16 10 C 0.08 3.20 5.22 86.30 0.45 3.65 16 11 N -0.55 -18.45 4.86 -895.73 -4.35 -22.80 16 12 C 0.05 1.31 5.58 86.31 0.48 1.79 16 13 C 0.06 1.11 4.30 86.31 0.37 1.48 16 14 N -0.50 -11.02 4.76 -694.76 -3.30 -14.32 16 15 C 0.13 2.52 5.64 38.19 0.22 2.74 16 16 C -0.15 -2.31 8.82 22.40 0.20 -2.11 16 17 C -0.06 -0.92 9.82 22.27 0.22 -0.70 16 18 C -0.07 -1.29 6.32 22.36 0.14 -1.15 16 19 Cl -0.06 -0.98 27.95 -2.72 -0.08 -1.05 16 20 C -0.01 -0.26 6.32 22.33 0.14 -0.12 16 21 Cl -0.05 -1.07 27.95 -2.72 -0.08 -1.14 16 22 C -0.13 -2.68 8.98 22.42 0.20 -2.48 16 23 C 0.07 1.86 5.38 86.31 0.46 2.32 16 24 C 0.06 1.88 4.93 86.31 0.43 2.30 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.00 0.05 6.26 -2.39 -0.01 0.03 16 28 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 29 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.03 0.90 8.14 -2.38 -0.02 0.89 16 31 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.11 1.57 7.17 -2.39 -0.02 1.56 16 33 H 0.06 1.20 7.58 -2.39 -0.02 1.18 16 34 H 0.16 1.77 5.81 -2.91 -0.02 1.75 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.14 2.86 7.17 -2.91 -0.02 2.84 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.09 2.21 6.81 -2.39 -0.02 2.19 16 39 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 2.83 5.99 -2.39 -0.01 2.81 16 Total: -1.00 -63.24 347.60 -0.32 -63.56 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.05 Total: 5.92 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.13 Total: -20.27 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -7.37 Total: -92.73 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.15 Total: -2.20 kcal Total: -63.24 -0.32 -63.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147508610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.848 kcal (2) G-P(sol) polarization free energy of solvation -63.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds