Wall clock time and date at job start Tue Mar 31 2020 15:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46916 * 242.61491 * 3 2 1 5 5 N 1.46499 * 109.47405 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99758 * 264.64463 * 5 4 3 7 7 C 1.50697 * 109.47258 * 278.02584 * 6 5 4 8 8 H 1.08000 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00300 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99637 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00434 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46871 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47195 * 119.99870 * 11 9 7 14 14 H 1.48499 * 109.47125 * 240.00146 * 11 9 7 15 15 C 1.34768 * 119.99912 * 84.64017 * 5 4 3 16 16 O 1.21553 * 120.00194 * 6.12490 * 15 5 4 17 17 C 1.47831 * 120.00230 * 186.12220 * 15 5 4 18 18 C 1.39945 * 120.94083 * 151.11152 * 17 15 5 19 19 N 1.32155 * 118.92427 * 180.02562 * 18 17 15 20 20 C 1.31865 * 120.96614 * 0.02562 * 19 18 17 21 21 C 1.50697 * 118.95254 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47185 * 104.99666 * 21 20 19 23 23 F 1.39893 * 109.47298 * 225.00283 * 21 20 19 24 24 F 1.39900 * 109.47044 * 345.00050 * 21 20 19 25 25 N 1.31866 * 122.09656 * 359.97438 * 20 19 18 26 26 C 1.32145 * 120.96809 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47052 * 122.62355 * 3 2 1 28 28 H 1.08994 * 109.47593 * 2.61855 * 3 2 1 29 29 H 1.09010 * 109.46927 * 60.00390 * 4 3 2 30 30 H 1.08998 * 109.47709 * 300.00812 * 4 3 2 31 31 H 1.08997 * 109.47556 * 38.03037 * 6 5 4 32 32 H 1.09005 * 109.47011 * 158.02810 * 6 5 4 33 33 H 0.97004 * 119.99917 * 180.02562 * 10 9 7 34 34 H 1.08003 * 120.53688 * 0.02562 * 18 17 15 35 35 H 1.08007 * 120.53831 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6644 1.2809 5 7 4.5827 0.6657 1.2807 6 6 5.3161 -0.4010 1.9666 7 6 5.3954 -0.0896 3.4390 8 1 4.9441 0.8124 3.8252 9 6 6.0439 -0.9562 4.2930 10 7 6.5939 -2.0544 3.8225 11 14 6.1416 -0.5707 6.1181 12 1 5.4498 0.7149 6.3902 13 1 5.4877 -1.6582 6.8895 14 1 7.5655 -0.4618 6.5256 15 6 5.2556 1.6480 0.6495 16 8 4.6522 2.5912 0.1764 17 6 6.7276 1.5786 0.5324 18 6 7.3924 2.1720 -0.5466 19 7 8.7095 2.0853 -0.6119 20 6 9.3947 1.4514 0.3196 21 6 10.8951 1.3797 0.1998 22 9 11.4788 2.2632 1.1140 23 9 11.3230 0.0760 0.4729 24 9 11.2767 1.7332 -1.0989 25 7 8.8087 0.8784 1.3527 26 6 7.4957 0.9166 1.4970 27 1 2.9711 0.5549 -0.8656 28 1 2.9719 -1.0257 -0.0469 29 1 2.7546 0.1102 2.1465 30 1 2.7538 1.6908 1.3279 31 1 4.7976 -1.3489 1.8231 32 1 6.3232 -0.4719 1.5556 33 1 7.0499 -2.6644 4.4234 34 1 6.8381 2.6925 -1.3136 35 1 7.0230 0.4452 2.3461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157253975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:57 Heat of formation + Delta-G solvation = -81.812105 kcal Electronic energy + Delta-G solvation = -27611.225788 eV Core-core repulsion = 23003.187678 eV Total energy + Delta-G solvation = -4608.038110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.14844 -47.67078 -47.63094 -41.37815 -39.37607 -36.82022 -35.83616 -33.97141 -33.47010 -32.79487 -31.11962 -27.94965 -27.58581 -24.97916 -24.25519 -23.58343 -22.80471 -19.59317 -19.04608 -18.73700 -18.57241 -17.73245 -17.41760 -17.03364 -16.67229 -15.87842 -15.33050 -15.05011 -14.85042 -14.79407 -14.53154 -14.41601 -14.23272 -14.04643 -13.77511 -13.76893 -13.74083 -13.70026 -13.21675 -12.79383 -12.72755 -12.50625 -12.34199 -11.85466 -11.62731 -11.37265 -11.22804 -11.11816 -10.86744 -10.67114 -10.41683 -10.13306 -9.82809 -9.58252 -9.29174 -8.89852 -8.29841 -6.56514 -4.70513 0.23016 1.04360 2.22677 2.66345 2.83105 2.86661 3.05928 3.17107 3.18056 3.25885 3.38428 3.58572 3.64214 4.06061 4.14172 4.34849 4.50282 4.53571 4.71440 4.73291 4.84950 5.04482 5.12546 5.16647 5.49228 5.81737 5.88383 6.06155 6.18379 6.40980 6.64919 6.75133 6.96984 7.37682 7.53805 7.58617 7.73392 7.75339 8.28023 8.47032 9.01738 10.47531 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.004640 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.779069 B = 6033.354346 C = 8206.284076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.220 3.780 3 C -0.046 4.046 4 C 0.127 3.873 5 N -0.582 5.582 6 C 0.206 3.794 7 C -0.564 4.564 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.869 5.869 11 Si 0.899 3.101 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.277 1.277 15 C 0.568 3.432 16 O -0.549 6.549 17 C -0.213 4.213 18 C 0.197 3.803 19 N -0.495 5.495 20 C 0.239 3.761 21 C 0.547 3.453 22 F -0.165 7.165 23 F -0.158 7.158 24 F -0.159 7.159 25 N -0.479 5.479 26 C 0.176 3.824 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.274 0.726 34 H 0.187 0.813 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 3.158 -6.438 8.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.098 4.098 3 C -0.087 4.087 4 C 0.002 3.998 5 N -0.311 5.311 6 C 0.087 3.913 7 C -0.602 4.602 8 H 0.091 0.909 9 C -0.134 4.134 10 N -0.504 5.504 11 Si 0.726 3.274 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.202 1.202 15 C 0.354 3.646 16 O -0.429 6.429 17 C -0.221 4.221 18 C 0.031 3.969 19 N -0.210 5.210 20 C -0.032 4.032 21 C 0.490 3.510 22 F -0.146 7.146 23 F -0.139 7.139 24 F -0.140 7.140 25 N -0.193 5.193 26 C 0.013 3.987 27 H 0.127 0.873 28 H 0.131 0.869 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.204 0.796 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.299 3.391 -6.702 8.204 hybrid contribution -0.060 -0.027 1.055 1.057 sum 3.239 3.364 -5.647 7.328 Atomic orbital electron populations 1.81199 1.13022 1.09291 1.08752 1.29002 0.95020 0.92774 0.93043 1.19750 0.81608 1.05120 1.02248 1.21204 0.80191 1.02342 0.96049 1.48049 1.05980 1.26224 1.50874 1.20376 0.93133 0.85736 0.92083 1.21483 1.38329 1.08844 0.91515 0.90895 1.25035 0.94173 0.94278 0.99870 1.69903 1.33351 1.10617 1.36524 0.86384 0.78523 0.78901 0.83609 1.19285 1.20431 1.20202 1.17672 0.85505 0.82628 0.78765 1.90754 1.69221 1.32841 1.50051 1.22051 0.97263 1.03184 0.99577 1.23369 0.88282 0.90228 0.94979 1.68037 1.08964 1.16944 1.27012 1.22829 0.95268 0.94951 0.90124 1.17151 0.84832 0.74619 0.74350 1.93246 1.85438 1.68885 1.67037 1.93265 1.90684 1.36467 1.93514 1.93241 1.91985 1.91768 1.37006 1.68353 1.13313 1.17344 1.20285 1.26414 0.86863 0.86468 0.98925 0.87253 0.86902 0.88336 0.89620 0.93398 0.92778 0.91599 0.79616 0.73329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.79 18.54 42.15 0.78 -6.01 16 2 C 0.22 2.78 15.43 -20.76 -0.32 2.46 16 3 C -0.05 -0.49 5.99 -29.51 -0.18 -0.67 16 4 C 0.13 1.69 5.37 -4.04 -0.02 1.67 16 5 N -0.58 -9.21 2.48 -176.18 -0.44 -9.65 16 6 C 0.21 3.79 4.62 -5.20 -0.02 3.77 16 7 C -0.56 -11.86 7.55 -34.44 -0.26 -12.12 16 8 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.07 1.65 5.31 -17.82 -0.09 1.56 16 10 N -0.87 -20.35 13.29 55.43 0.74 -19.62 16 11 Si 0.90 18.06 29.54 -169.99 -5.02 13.04 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 15 C 0.57 9.29 7.46 -12.34 -0.09 9.20 16 16 O -0.55 -9.61 16.41 5.32 0.09 -9.52 16 17 C -0.21 -3.45 5.61 -104.69 -0.59 -4.04 16 18 C 0.20 2.85 10.90 -16.77 -0.18 2.67 16 19 N -0.50 -7.72 9.81 -10.39 -0.10 -7.82 16 20 C 0.24 3.97 7.09 -157.07 -1.11 2.86 16 21 C 0.55 8.19 3.49 36.00 0.13 8.32 16 22 F -0.16 -2.43 17.30 2.25 0.04 -2.39 16 23 F -0.16 -2.41 17.19 2.25 0.04 -2.37 16 24 F -0.16 -2.22 16.86 2.25 0.04 -2.18 16 25 N -0.48 -8.74 10.19 -10.40 -0.11 -8.85 16 26 C 0.18 3.16 8.80 -16.78 -0.15 3.01 16 27 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.31 8.03 -51.92 -0.42 0.89 16 30 H 0.09 1.17 7.51 -51.93 -0.39 0.78 16 31 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 1.06 4.03 -51.94 -0.21 0.85 16 33 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 34 H 0.19 2.15 7.98 -52.48 -0.42 1.73 16 35 H 0.25 4.97 3.10 -52.48 -0.16 4.80 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -25.05 331.72 -4.25 -29.30 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.41 Total: 2.38 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -2.90 Total: 18.68 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.87 Total: -51.95 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.12 Total: -6.94 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -25.05 -4.25 -29.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157253975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.512 kcal (2) G-P(sol) polarization free energy of solvation -25.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds