Wall clock time and date at job start Tue Mar 31 2020 15:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46916 * 242.61491 * 3 2 1 5 5 N 1.46499 * 109.47405 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99758 * 264.64463 * 5 4 3 7 7 C 1.50697 * 109.47258 * 278.02584 * 6 5 4 8 8 H 1.08000 * 119.99683 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00300 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99637 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00434 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46871 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47195 * 119.99870 * 11 9 7 14 14 H 1.48499 * 109.47125 * 240.00146 * 11 9 7 15 15 C 1.34768 * 119.99912 * 84.64017 * 5 4 3 16 16 O 1.21553 * 120.00194 * 6.12490 * 15 5 4 17 17 C 1.47831 * 120.00230 * 186.12220 * 15 5 4 18 18 C 1.39945 * 120.94083 * 151.11152 * 17 15 5 19 19 N 1.32155 * 118.92427 * 180.02562 * 18 17 15 20 20 C 1.31865 * 120.96614 * 0.02562 * 19 18 17 21 21 C 1.50697 * 118.95254 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47185 * 104.99666 * 21 20 19 23 23 F 1.39893 * 109.47298 * 225.00283 * 21 20 19 24 24 F 1.39900 * 109.47044 * 345.00050 * 21 20 19 25 25 N 1.31866 * 122.09656 * 359.97438 * 20 19 18 26 26 C 1.32145 * 120.96809 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.47052 * 122.62355 * 3 2 1 28 28 H 1.08994 * 109.47593 * 2.61855 * 3 2 1 29 29 H 1.09010 * 109.46927 * 60.00390 * 4 3 2 30 30 H 1.08998 * 109.47709 * 300.00812 * 4 3 2 31 31 H 1.08997 * 109.47556 * 38.03037 * 6 5 4 32 32 H 1.09005 * 109.47011 * 158.02810 * 6 5 4 33 33 H 0.97004 * 119.99917 * 180.02562 * 10 9 7 34 34 H 1.08003 * 120.53688 * 0.02562 * 18 17 15 35 35 H 1.08007 * 120.53831 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6644 1.2809 5 7 4.5827 0.6657 1.2807 6 6 5.3161 -0.4010 1.9666 7 6 5.3954 -0.0896 3.4390 8 1 4.9441 0.8124 3.8252 9 6 6.0439 -0.9562 4.2930 10 7 6.5939 -2.0544 3.8225 11 14 6.1416 -0.5707 6.1181 12 1 5.4498 0.7149 6.3902 13 1 5.4877 -1.6582 6.8895 14 1 7.5655 -0.4618 6.5256 15 6 5.2556 1.6480 0.6495 16 8 4.6522 2.5912 0.1764 17 6 6.7276 1.5786 0.5324 18 6 7.3924 2.1720 -0.5466 19 7 8.7095 2.0853 -0.6119 20 6 9.3947 1.4514 0.3196 21 6 10.8951 1.3797 0.1998 22 9 11.4788 2.2632 1.1140 23 9 11.3230 0.0760 0.4729 24 9 11.2767 1.7332 -1.0989 25 7 8.8087 0.8784 1.3527 26 6 7.4957 0.9166 1.4970 27 1 2.9711 0.5549 -0.8656 28 1 2.9719 -1.0257 -0.0469 29 1 2.7546 0.1102 2.1465 30 1 2.7538 1.6908 1.3279 31 1 4.7976 -1.3489 1.8231 32 1 6.3232 -0.4719 1.5556 33 1 7.0499 -2.6644 4.4234 34 1 6.8381 2.6925 -1.3136 35 1 7.0230 0.4452 2.3461 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157253975.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:56 Heat of formation + Delta-G solvation = -94.647504 kcal Electronic energy + Delta-G solvation = -27611.782373 eV Core-core repulsion = 23003.187678 eV Total energy + Delta-G solvation = -4608.594695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.33322 -48.85681 -48.80608 -42.67371 -40.67064 -37.94389 -37.17643 -35.24953 -34.88187 -34.22527 -32.29499 -29.44364 -28.84274 -26.22562 -25.50802 -25.05680 -24.07849 -20.88241 -20.27809 -19.95888 -19.76349 -18.94333 -18.67515 -18.45179 -18.01639 -17.17959 -16.60856 -16.40166 -16.30750 -15.87102 -15.77323 -15.59599 -15.46296 -15.22636 -15.02731 -14.96868 -14.95141 -14.92171 -14.45088 -14.29730 -14.02308 -13.61127 -13.52651 -13.10345 -12.95953 -12.79648 -12.72800 -12.54243 -12.20975 -12.01379 -11.76650 -11.68291 -11.14985 -10.96572 -10.61096 -10.54264 -9.65573 -8.26291 -6.41772 -1.05610 -0.23149 1.00549 1.43940 1.46858 1.52382 1.57173 1.68243 1.82074 2.05120 2.17817 2.29241 2.39830 2.43084 3.04546 3.10803 3.14559 3.24526 3.35144 3.43436 3.57972 3.76270 4.13409 4.15758 4.57869 4.67059 4.73899 4.88459 5.01542 5.05159 5.18732 5.46356 5.57159 5.70181 5.93289 6.36418 6.44886 6.58388 6.73330 7.04117 7.32360 8.76846 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009917 B = 0.004640 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.779069 B = 6033.354346 C = 8206.284076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.033 4.033 4 C 0.123 3.877 5 N -0.579 5.579 6 C 0.217 3.783 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.040 3.960 10 N -0.896 5.896 11 Si 0.941 3.059 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.283 1.283 15 C 0.572 3.428 16 O -0.557 6.557 17 C -0.215 4.215 18 C 0.212 3.788 19 N -0.493 5.493 20 C 0.234 3.766 21 C 0.553 3.447 22 F -0.163 7.163 23 F -0.160 7.160 24 F -0.151 7.151 25 N -0.502 5.502 26 C 0.166 3.834 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.272 0.728 34 H 0.221 0.779 35 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 3.866 -7.523 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.073 4.073 4 C -0.001 4.001 5 N -0.308 5.308 6 C 0.097 3.903 7 C -0.596 4.596 8 H 0.084 0.916 9 C -0.164 4.164 10 N -0.533 5.533 11 Si 0.767 3.233 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.209 1.209 15 C 0.359 3.641 16 O -0.438 6.438 17 C -0.222 4.222 18 C 0.046 3.954 19 N -0.207 5.207 20 C -0.037 4.037 21 C 0.496 3.504 22 F -0.144 7.144 23 F -0.142 7.142 24 F -0.132 7.132 25 N -0.216 5.216 26 C 0.003 3.997 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.237 0.763 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.284 4.106 -7.784 9.393 hybrid contribution -0.036 -0.182 1.361 1.373 sum 3.249 3.924 -6.423 8.198 Atomic orbital electron populations 1.81232 1.14463 1.10967 1.10247 1.29198 0.95074 0.91292 0.91626 1.19727 0.80095 1.06234 1.01288 1.21306 0.78684 1.02616 0.97456 1.47953 1.06861 1.25532 1.50408 1.20082 0.93208 0.86148 0.90850 1.21646 1.37054 1.08003 0.92924 0.91609 1.25488 0.94426 0.94427 1.02069 1.69958 1.34776 1.11467 1.37089 0.85746 0.77846 0.78485 0.81179 1.19267 1.20601 1.20900 1.17628 0.85464 0.82413 0.78594 1.90756 1.69394 1.32995 1.50625 1.22055 0.97110 1.03234 0.99781 1.23896 0.87881 0.88917 0.94721 1.68150 1.09425 1.16652 1.26468 1.23078 0.96023 0.94729 0.89885 1.16987 0.84177 0.74566 0.74659 1.93250 1.85310 1.68815 1.67073 1.93262 1.90624 1.36698 1.93573 1.93258 1.91820 1.91680 1.36414 1.68280 1.13584 1.18328 1.21393 1.26027 0.87172 0.87266 0.99200 0.85680 0.84968 0.88498 0.89784 0.93676 0.93209 0.91878 0.76312 0.75199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.46 18.54 20.01 0.37 -14.09 16 2 C 0.25 5.76 15.43 89.44 1.38 7.14 16 3 C -0.03 -0.61 5.99 28.79 0.17 -0.44 16 4 C 0.12 3.05 5.37 86.38 0.46 3.52 16 5 N -0.58 -17.38 2.48 -829.59 -2.05 -19.43 16 6 C 0.22 7.83 4.62 85.63 0.40 8.23 16 7 C -0.56 -23.27 7.55 25.60 0.19 -23.07 16 8 H 0.07 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.04 1.80 5.31 84.65 0.45 2.25 16 10 N -0.90 -42.19 13.29 21.45 0.28 -41.90 16 11 Si 0.94 37.03 29.54 68.60 2.03 39.05 16 12 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 13 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 14 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 15 C 0.57 17.55 7.46 86.78 0.65 18.20 16 16 O -0.56 -18.04 16.41 -3.88 -0.06 -18.11 16 17 C -0.21 -6.55 5.61 -19.91 -0.11 -6.67 16 18 C 0.21 5.54 10.90 85.06 0.93 6.47 16 19 N -0.49 -14.26 9.81 -186.80 -1.83 -16.09 16 20 C 0.23 7.45 7.09 138.71 0.98 8.43 16 21 C 0.55 15.85 3.49 71.24 0.25 16.10 16 22 F -0.16 -4.62 17.30 44.97 0.78 -3.84 16 23 F -0.16 -4.74 17.19 44.97 0.77 -3.97 16 24 F -0.15 -3.95 16.86 44.97 0.76 -3.19 16 25 N -0.50 -18.02 10.19 -186.82 -1.90 -19.92 16 26 C 0.17 5.85 8.80 85.06 0.75 6.60 16 27 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.10 2.44 8.03 -2.38 -0.02 2.42 16 30 H 0.08 2.14 7.51 -2.39 -0.02 2.12 16 31 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.05 1.92 4.03 -2.40 -0.01 1.91 16 33 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 34 H 0.22 4.21 7.98 -2.91 -0.02 4.18 16 35 H 0.23 9.18 3.10 -2.91 -0.01 9.17 16 Total: -1.00 -52.23 331.72 6.83 -45.41 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 1.19 Total: 9.32 kcal Atomic # 6 Polarization: 40.26 SS G_CDS: 6.50 Total: 46.76 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -5.13 Total: -111.44 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.06 Total: -18.11 kcal Atomic # 9 Polarization: -13.30 SS G_CDS: 2.31 Total: -10.99 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.05 kcal Total: -52.23 6.83 -45.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157253975.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.242 kcal (2) G-P(sol) polarization free energy of solvation -52.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds