Wall clock time and date at job start Tue Mar 31 2020 14:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29492 * 1 3 3 Si 1.86808 * 119.99435 * 2 1 4 4 H 1.48498 * 109.46815 * 274.86641 * 3 2 1 5 5 H 1.48494 * 109.47428 * 34.87347 * 3 2 1 6 6 H 1.48502 * 109.46891 * 154.87322 * 3 2 1 7 7 C 1.46572 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 162.88591 * 7 2 1 9 9 C 1.39658 * 119.99994 * 342.88699 * 7 2 1 10 10 C 1.41653 * 120.19226 * 156.41680 * 9 7 2 11 11 C 1.35923 * 119.79484 * 180.02562 * 10 9 7 12 12 C 1.40001 * 120.20043 * 359.97438 * 11 10 9 13 13 N 1.38186 * 119.80275 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00029 * 146.42448 * 13 12 11 15 15 O 1.21568 * 120.00418 * 354.68096 * 14 13 12 16 16 C 1.47543 * 120.00046 * 174.68354 * 14 13 12 17 17 C 1.39787 * 120.08630 * 359.72030 * 16 14 13 18 18 C 1.37675 * 119.90669 * 179.71763 * 17 16 14 19 19 C 1.39034 * 120.08771 * 0.55905 * 18 17 16 20 20 O 1.35703 * 119.90599 * 179.69557 * 19 18 17 21 21 C 1.38994 * 120.18099 * 359.71939 * 19 18 17 22 22 N 1.48012 * 119.95047 * 180.02562 * 21 19 18 23 23 O 1.31701 * 119.99873 * 179.97438 * 22 21 19 24 24 O 1.31695 * 120.00500 * 359.97438 * 22 21 19 25 25 C 1.37706 * 120.09239 * 0.02562 * 21 19 18 26 26 C 1.40009 * 120.39396 * 0.27811 * 12 11 10 27 27 C 1.35915 * 120.20390 * 359.44062 * 26 12 11 28 28 H 0.97006 * 120.00769 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.10511 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.89797 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99870 * 326.41857 * 13 12 11 32 32 H 1.07998 * 120.05247 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.95682 * 180.25755 * 18 17 16 34 34 H 0.96696 * 114.00272 * 270.01773 * 20 19 18 35 35 H 1.07994 * 120.04724 * 179.97438 * 25 21 19 36 36 H 1.07999 * 119.89715 * 179.72426 * 26 12 11 37 37 H 1.07999 * 120.10769 * 180.24982 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6179 0.0000 4 1 2.3733 2.1059 -1.3950 5 1 1.4815 2.6208 0.8005 6 1 3.5741 1.4129 0.5945 7 6 2.0278 -1.2693 0.0006 8 1 3.0720 -1.2901 -0.2747 9 6 1.3760 -2.4519 0.3570 10 6 1.8689 -3.7009 -0.0942 11 6 1.2279 -4.8468 0.2572 12 6 0.0840 -4.7952 1.0628 13 7 -0.5609 -5.9653 1.4155 14 6 -1.1616 -6.0677 2.6176 15 8 -1.0544 -5.1691 3.4292 16 6 -1.9494 -7.2706 2.9486 17 6 -2.0787 -8.3025 2.0145 18 6 -2.8097 -9.4258 2.3294 19 6 -3.4286 -9.5295 3.5701 20 8 -4.1534 -10.6357 3.8743 21 6 -3.3072 -8.5031 4.4995 22 7 -3.9677 -8.6191 5.8190 23 8 -3.8529 -7.6473 6.7005 24 8 -4.6701 -9.6940 6.1117 25 6 -2.5734 -7.3785 4.1943 26 6 -0.4133 -3.5648 1.5089 27 6 0.2182 -2.4094 1.1721 28 1 -0.4851 0.8400 -0.0004 29 1 2.7510 -3.7425 -0.7161 30 1 1.6020 -5.7999 -0.0862 31 1 -0.5814 -6.7130 0.7977 32 1 -1.6023 -8.2206 1.0487 33 1 -2.9067 -10.2254 1.6099 34 1 -5.0876 -10.5724 3.6332 35 1 -2.4800 -6.5813 4.9168 36 1 -1.2988 -3.5341 2.1264 37 1 -0.1645 -1.4614 1.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164024107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:52 Heat of formation + Delta-G solvation = 5.034157 kcal Electronic energy + Delta-G solvation = -25849.198771 eV Core-core repulsion = 21754.490587 eV Total energy + Delta-G solvation = -4094.708185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.20611 -39.78383 -38.54152 -37.64038 -36.85446 -34.71190 -34.50710 -33.32614 -32.27741 -31.07915 -29.58065 -29.14013 -26.91836 -25.36434 -23.79189 -23.05545 -21.62298 -21.19972 -20.01568 -19.51762 -18.51939 -18.24333 -17.63741 -17.29796 -16.72461 -16.56528 -15.80408 -15.61635 -15.42769 -14.88991 -14.80459 -14.45793 -14.06203 -13.65699 -13.22103 -12.94907 -12.77650 -12.68943 -12.14581 -11.97648 -11.80665 -11.50198 -11.48453 -11.29619 -11.21942 -11.09355 -10.83165 -10.78233 -10.19385 -10.17656 -9.83230 -9.65554 -9.55561 -9.25642 -9.09310 -7.63101 -7.23403 -6.97428 -4.36119 -0.98883 0.06278 0.65813 0.82166 2.20776 2.62055 2.93078 2.95200 3.00567 3.08946 3.15654 3.28542 3.50093 3.72304 3.84580 4.21036 4.26459 4.26813 4.38779 4.58192 5.00261 5.12748 5.28182 5.33749 5.50166 5.59995 5.77616 6.05095 6.30792 6.53054 6.64997 6.70426 6.79269 6.89265 7.00659 7.20885 7.48597 7.53772 7.85998 7.94870 8.02473 8.12502 8.45990 8.55460 8.68291 8.94056 9.81622 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002317 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.414042 B =12079.161378 C =12852.861119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.109 3.891 10 C -0.233 4.233 11 C -0.086 4.086 12 C -0.046 4.046 13 N -0.626 5.626 14 C 0.532 3.468 15 O -0.517 6.517 16 C -0.125 4.125 17 C -0.020 4.020 18 C -0.151 4.151 19 C 0.198 3.802 20 O -0.471 6.471 21 C -0.042 4.042 22 N -0.016 5.016 23 O -0.174 6.174 24 O -0.150 6.150 25 C 0.014 3.986 26 C -0.071 4.071 27 C -0.177 4.177 28 H 0.290 0.710 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.391 0.609 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.409 0.591 35 H 0.173 0.827 36 H 0.099 0.901 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 -14.929 -0.523 16.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.153 4.153 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.253 4.253 11 C -0.106 4.106 12 C -0.138 4.138 13 N -0.268 5.268 14 C 0.319 3.681 15 O -0.394 6.394 16 C -0.129 4.129 17 C -0.040 4.040 18 C -0.170 4.170 19 C 0.149 3.851 20 O -0.284 6.284 21 C -0.129 4.129 22 N 0.464 4.536 23 O -0.365 6.365 24 O -0.348 6.348 25 C -0.006 4.006 26 C -0.091 4.091 27 C -0.197 4.197 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.225 0.775 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.270 0.730 35 H 0.190 0.810 36 H 0.117 0.883 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.274 -14.261 -0.322 15.583 hybrid contribution -0.402 0.368 -0.134 0.562 sum -6.676 -13.892 -0.456 15.420 Atomic orbital electron populations 1.69136 1.08875 1.30610 1.28569 1.27532 0.94503 1.02102 0.91166 0.86177 0.81107 0.79423 0.79395 1.19162 1.19683 1.17840 1.20673 0.97556 0.90158 1.39631 0.89848 1.17639 0.91409 0.92004 0.88304 1.20492 1.03816 0.92526 1.08416 1.19963 0.93883 0.96983 0.99818 1.16991 0.99494 0.84098 1.13238 1.42493 1.52823 1.16151 1.15295 1.17736 0.81651 0.86063 0.82697 1.90840 1.60958 1.39874 1.47708 1.20209 1.01553 0.97159 0.93975 1.21779 0.92271 0.90786 0.99118 1.21471 1.00355 0.99828 0.95353 1.18421 0.92695 0.83716 0.90221 1.84786 1.25746 1.33257 1.84585 1.20790 1.07807 0.99627 0.84673 1.50235 0.98824 1.01668 1.02905 1.96330 1.68119 1.29399 1.42638 1.96274 1.37394 1.15856 1.85248 1.21161 0.88005 0.94767 0.96634 1.20335 0.98598 0.91299 0.98856 1.20976 0.99715 0.96756 1.02260 0.89780 0.88740 0.89401 0.77466 0.82879 0.82072 0.73013 0.80953 0.88335 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.09 10.97 55.99 0.61 -17.48 16 2 C 0.07 1.72 5.32 -15.18 -0.08 1.64 16 3 Si 0.92 17.30 29.67 -169.99 -5.04 12.25 16 4 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 6 H -0.25 -4.82 7.11 56.52 0.40 -4.42 16 7 C -0.45 -11.42 9.28 -35.69 -0.33 -11.75 16 8 H 0.08 2.00 7.99 -52.48 -0.42 1.58 16 9 C 0.11 2.81 5.62 -106.76 -0.60 2.21 16 10 C -0.23 -5.41 9.75 -39.11 -0.38 -5.79 16 11 C -0.09 -1.80 9.89 -39.75 -0.39 -2.19 16 12 C -0.05 -0.97 6.28 -83.68 -0.53 -1.49 16 13 N -0.63 -9.95 5.21 -10.67 -0.06 -10.01 16 14 C 0.53 8.64 7.47 -12.47 -0.09 8.54 16 15 O -0.52 -10.74 14.00 5.31 0.07 -10.67 16 16 C -0.12 -1.44 5.88 -104.96 -0.62 -2.06 16 17 C -0.02 -0.15 9.53 -39.21 -0.37 -0.52 16 18 C -0.15 -0.93 9.97 -39.49 -0.39 -1.32 16 19 C 0.20 1.69 6.70 -39.01 -0.26 1.43 16 20 O -0.47 -3.54 11.39 -41.01 -0.47 -4.00 16 21 C -0.04 -0.48 6.89 -79.86 -0.55 -1.03 16 22 N -0.02 -0.23 4.98 34.00 0.17 -0.06 16 23 O -0.17 -2.75 19.14 -31.57 -0.60 -3.36 16 24 O -0.15 -2.08 17.87 -39.24 -0.70 -2.79 16 25 C 0.01 0.18 9.11 -39.21 -0.36 -0.18 16 26 C -0.07 -1.70 8.55 -39.75 -0.34 -2.04 16 27 C -0.18 -4.58 8.71 -39.11 -0.34 -4.92 16 28 H 0.29 6.22 8.27 -40.82 -0.34 5.88 16 29 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 30 H 0.09 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.39 4.42 6.84 -40.82 -0.28 4.14 16 32 H 0.15 0.70 6.41 -52.49 -0.34 0.36 16 33 H 0.16 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.41 1.23 9.06 45.56 0.41 1.64 16 35 H 0.17 2.35 7.15 -52.49 -0.38 1.97 16 36 H 0.10 2.36 6.41 -52.49 -0.34 2.02 16 37 H 0.12 3.14 6.08 -52.49 -0.32 2.82 16 LS Contribution 335.90 15.07 5.06 5.06 Total: -1.00 -32.25 335.90 -8.65 -40.89 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -2.05 Total: 9.64 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -5.64 Total: -19.48 kcal Atomic # 7 Polarization: -28.27 SS G_CDS: 0.73 Total: -27.55 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.70 Total: -20.82 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.04 Total: 12.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.25 -8.65 -40.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164024107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.927 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds