Wall clock time and date at job start Tue Mar 31 2020 14:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29492 * 1 3 3 Si 1.86808 * 119.99435 * 2 1 4 4 H 1.48498 * 109.46815 * 274.86641 * 3 2 1 5 5 H 1.48494 * 109.47428 * 34.87347 * 3 2 1 6 6 H 1.48502 * 109.46891 * 154.87322 * 3 2 1 7 7 C 1.46572 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 162.88591 * 7 2 1 9 9 C 1.39658 * 119.99994 * 342.88699 * 7 2 1 10 10 C 1.41653 * 120.19226 * 156.41680 * 9 7 2 11 11 C 1.35923 * 119.79484 * 180.02562 * 10 9 7 12 12 C 1.40001 * 120.20043 * 359.97438 * 11 10 9 13 13 N 1.38186 * 119.80275 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00029 * 146.42448 * 13 12 11 15 15 O 1.21568 * 120.00418 * 354.68096 * 14 13 12 16 16 C 1.47543 * 120.00046 * 174.68354 * 14 13 12 17 17 C 1.39787 * 120.08630 * 359.72030 * 16 14 13 18 18 C 1.37675 * 119.90669 * 179.71763 * 17 16 14 19 19 C 1.39034 * 120.08771 * 0.55905 * 18 17 16 20 20 O 1.35703 * 119.90599 * 179.69557 * 19 18 17 21 21 C 1.38994 * 120.18099 * 359.71939 * 19 18 17 22 22 N 1.48012 * 119.95047 * 180.02562 * 21 19 18 23 23 O 1.31701 * 119.99873 * 179.97438 * 22 21 19 24 24 O 1.31695 * 120.00500 * 359.97438 * 22 21 19 25 25 C 1.37706 * 120.09239 * 0.02562 * 21 19 18 26 26 C 1.40009 * 120.39396 * 0.27811 * 12 11 10 27 27 C 1.35915 * 120.20390 * 359.44062 * 26 12 11 28 28 H 0.97006 * 120.00769 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.10511 * 359.97438 * 10 9 7 30 30 H 1.07994 * 119.89797 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99870 * 326.41857 * 13 12 11 32 32 H 1.07998 * 120.05247 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.95682 * 180.25755 * 18 17 16 34 34 H 0.96696 * 114.00272 * 270.01773 * 20 19 18 35 35 H 1.07994 * 120.04724 * 179.97438 * 25 21 19 36 36 H 1.07999 * 119.89715 * 179.72426 * 26 12 11 37 37 H 1.07999 * 120.10769 * 180.24982 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6179 0.0000 4 1 2.3733 2.1059 -1.3950 5 1 1.4815 2.6208 0.8005 6 1 3.5741 1.4129 0.5945 7 6 2.0278 -1.2693 0.0006 8 1 3.0720 -1.2901 -0.2747 9 6 1.3760 -2.4519 0.3570 10 6 1.8689 -3.7009 -0.0942 11 6 1.2279 -4.8468 0.2572 12 6 0.0840 -4.7952 1.0628 13 7 -0.5609 -5.9653 1.4155 14 6 -1.1616 -6.0677 2.6176 15 8 -1.0544 -5.1691 3.4292 16 6 -1.9494 -7.2706 2.9486 17 6 -2.0787 -8.3025 2.0145 18 6 -2.8097 -9.4258 2.3294 19 6 -3.4286 -9.5295 3.5701 20 8 -4.1534 -10.6357 3.8743 21 6 -3.3072 -8.5031 4.4995 22 7 -3.9677 -8.6191 5.8190 23 8 -3.8529 -7.6473 6.7005 24 8 -4.6701 -9.6940 6.1117 25 6 -2.5734 -7.3785 4.1943 26 6 -0.4133 -3.5648 1.5089 27 6 0.2182 -2.4094 1.1721 28 1 -0.4851 0.8400 -0.0004 29 1 2.7510 -3.7425 -0.7161 30 1 1.6020 -5.7999 -0.0862 31 1 -0.5814 -6.7130 0.7977 32 1 -1.6023 -8.2206 1.0487 33 1 -2.9067 -10.2254 1.6099 34 1 -5.0876 -10.5724 3.6332 35 1 -2.4800 -6.5813 4.9168 36 1 -1.2988 -3.5341 2.1264 37 1 -0.1645 -1.4614 1.5204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164024107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:51 Heat of formation + Delta-G solvation = -16.565173 kcal Electronic energy + Delta-G solvation = -25850.135388 eV Core-core repulsion = 21754.490587 eV Total energy + Delta-G solvation = -4095.644802 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.13512 -41.05530 -39.54153 -39.02118 -37.92777 -36.30092 -35.60024 -34.96006 -33.17142 -32.06255 -31.38026 -30.74300 -27.95268 -26.80611 -25.02403 -23.85811 -23.24119 -22.77622 -21.44421 -20.35540 -19.56603 -19.42657 -19.24047 -18.51584 -17.89335 -17.46909 -17.14710 -16.66701 -16.58509 -16.25565 -15.80293 -15.74697 -15.43849 -14.95062 -14.54068 -14.30530 -13.92628 -13.76698 -13.63694 -13.53816 -13.26054 -12.93714 -12.79510 -12.78730 -12.54752 -12.39914 -11.98508 -11.93768 -11.82483 -11.52021 -11.27192 -10.99597 -10.92329 -10.74401 -10.35512 -9.46417 -8.98366 -8.70948 -6.21505 -1.97798 -0.78032 -0.16872 -0.11394 0.82567 1.22252 1.34542 1.37906 1.50748 1.59684 2.06979 2.14215 2.27345 2.48922 2.64793 3.13524 3.36373 3.42629 3.52831 3.69554 3.75849 4.24804 4.31921 4.44820 4.48361 4.54053 4.58648 4.74716 4.91668 4.99796 5.07951 5.18153 5.25594 5.43785 5.46812 5.66958 5.85777 6.08630 6.12096 6.23785 6.39799 6.59907 6.67049 6.82623 7.04136 7.29424 8.11054 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002317 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.414042 B =12079.161378 C =12852.861119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.254 1.254 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.078 3.922 10 C -0.246 4.246 11 C -0.080 4.080 12 C -0.030 4.030 13 N -0.616 5.616 14 C 0.536 3.464 15 O -0.572 6.572 16 C -0.139 4.139 17 C 0.011 3.989 18 C -0.124 4.124 19 C 0.222 3.778 20 O -0.475 6.475 21 C -0.062 4.062 22 N -0.012 5.012 23 O -0.257 6.257 24 O -0.121 6.121 25 C 0.004 3.996 26 C -0.087 4.087 27 C -0.207 4.207 28 H 0.298 0.702 29 H 0.108 0.892 30 H 0.137 0.863 31 H 0.419 0.581 32 H 0.195 0.805 33 H 0.214 0.786 34 H 0.432 0.568 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 -18.862 -3.231 20.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.522 4.522 8 H 0.103 0.897 9 C 0.076 3.924 10 C -0.266 4.266 11 C -0.100 4.100 12 C -0.123 4.123 13 N -0.261 5.261 14 C 0.325 3.675 15 O -0.453 6.453 16 C -0.144 4.144 17 C -0.008 4.008 18 C -0.142 4.142 19 C 0.174 3.826 20 O -0.291 6.291 21 C -0.150 4.150 22 N 0.462 4.538 23 O -0.429 6.429 24 O -0.331 6.331 25 C -0.016 4.016 26 C -0.107 4.107 27 C -0.227 4.227 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.259 0.741 32 H 0.212 0.788 33 H 0.231 0.769 34 H 0.298 0.702 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.270 -18.105 -2.983 19.391 hybrid contribution -0.575 1.155 0.650 1.445 sum -6.845 -16.950 -2.333 18.428 Atomic orbital electron populations 1.69176 1.10363 1.31996 1.29193 1.28414 0.95241 1.05179 0.90165 0.85084 0.79338 0.74723 0.79918 1.17790 1.18985 1.17909 1.20932 0.97930 0.91464 1.41844 0.89728 1.17981 0.91813 0.93641 0.88999 1.20784 1.04551 0.92571 1.08666 1.20348 0.92816 0.98273 0.98558 1.17019 0.99172 0.84778 1.11353 1.42269 1.52369 1.15449 1.15984 1.18390 0.80612 0.86655 0.81870 1.90829 1.62569 1.42406 1.49471 1.19710 1.02806 0.96902 0.94945 1.22203 0.90422 0.89018 0.99110 1.21959 0.97655 1.00105 0.94517 1.18702 0.91729 0.82381 0.89822 1.84733 1.27489 1.32090 1.84838 1.21033 1.08967 1.00931 0.84095 1.50540 0.98398 1.01080 1.03734 1.96354 1.71578 1.30552 1.44381 1.96218 1.36160 1.15429 1.85337 1.20919 0.89200 0.94721 0.96791 1.20400 0.98520 0.92546 0.99254 1.20877 1.01202 0.96555 1.04093 0.88931 0.87406 0.84510 0.74130 0.78821 0.76901 0.70222 0.84114 0.89564 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.79 10.97 23.22 0.25 -39.54 16 2 C 0.03 1.61 5.32 87.21 0.46 2.08 16 3 Si 0.99 36.30 29.67 68.60 2.04 38.34 16 4 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 7 C -0.50 -26.04 9.28 24.79 0.23 -25.81 16 8 H 0.08 4.22 7.99 -2.91 -0.02 4.20 16 9 C 0.08 4.19 5.62 -21.25 -0.12 4.07 16 10 C -0.25 -11.39 9.75 22.58 0.22 -11.17 16 11 C -0.08 -3.16 9.89 22.16 0.22 -2.94 16 12 C -0.03 -1.22 6.28 39.00 0.24 -0.98 16 13 N -0.62 -18.03 5.21 -305.93 -1.59 -19.63 16 14 C 0.54 17.06 7.47 86.70 0.65 17.71 16 15 O -0.57 -25.04 14.00 -3.93 -0.05 -25.10 16 16 C -0.14 -2.94 5.88 -20.08 -0.12 -3.06 16 17 C 0.01 0.10 9.53 22.51 0.21 0.31 16 18 C -0.12 -0.65 9.97 22.33 0.22 -0.43 16 19 C 0.22 2.77 6.70 22.64 0.15 2.92 16 20 O -0.47 -4.67 11.39 -69.01 -0.79 -5.46 16 21 C -0.06 -1.36 6.89 36.43 0.25 -1.10 16 22 N -0.01 -0.34 4.98 -46.33 -0.23 -0.57 16 23 O -0.26 -8.98 19.14 3.51 0.07 -8.91 16 24 O -0.12 -3.20 17.87 10.86 0.19 -3.00 16 25 C 0.00 0.10 9.11 22.51 0.21 0.31 16 26 C -0.09 -4.36 8.55 22.16 0.19 -4.17 16 27 C -0.21 -11.38 8.71 22.57 0.20 -11.19 16 28 H 0.30 13.40 8.27 -92.70 -0.77 12.64 16 29 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.42 7.32 6.84 -92.71 -0.63 6.69 16 32 H 0.19 0.21 6.41 -2.91 -0.02 0.19 16 33 H 0.21 -0.80 8.06 -2.91 -0.02 -0.83 16 34 H 0.43 0.27 9.06 -74.06 -0.67 -0.40 16 35 H 0.14 4.38 7.15 -2.91 -0.02 4.36 16 36 H 0.09 4.43 6.41 -2.91 -0.02 4.41 16 37 H 0.09 5.44 6.08 -2.91 -0.02 5.43 16 Total: -1.00 -80.27 335.90 2.98 -77.28 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.12 Total: 20.04 kcal Atomic # 6 Polarization: -36.67 SS G_CDS: 3.22 Total: -33.45 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.57 Total: -59.74 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.58 Total: -42.46 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.04 Total: 38.34 kcal Total: -80.27 2.98 -77.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164024107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.716 kcal (2) G-P(sol) polarization free energy of solvation -80.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds