Wall clock time and date at job start Tue Mar 31 2020 15:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47104 * 2 1 4 4 C 1.38258 * 120.00560 * 272.70409 * 3 2 1 5 5 C 1.38210 * 120.00408 * 180.22708 * 4 3 2 6 6 C 1.38257 * 120.00013 * 359.81932 * 5 4 3 7 7 N 1.48013 * 120.00013 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99994 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00085 * 0.02562 * 7 6 5 10 10 C 1.38215 * 119.99908 * 359.97438 * 6 5 4 11 11 C 1.38213 * 119.99741 * 92.51696 * 3 2 1 12 12 S 1.76197 * 120.00242 * 359.97438 * 11 3 2 13 13 O 1.42106 * 106.40048 * 310.46925 * 12 11 3 14 14 O 1.42097 * 106.40218 * 177.54870 * 12 11 3 15 15 N 1.65602 * 107.21590 * 64.00728 * 12 11 3 16 16 C 1.46497 * 119.99801 * 64.93294 * 15 12 11 17 17 H 1.08999 * 109.47161 * 335.34530 * 16 15 12 18 18 C 1.53009 * 109.47051 * 95.34431 * 16 15 12 19 19 C 1.50698 * 109.46955 * 215.34146 * 16 15 12 20 20 H 1.08002 * 120.00162 * 355.12798 * 19 16 15 21 21 C 1.37881 * 120.00125 * 175.12490 * 19 16 15 22 22 N 1.31513 * 120.00184 * 175.92390 * 21 19 16 23 23 Si 1.86800 * 119.99662 * 355.92945 * 21 19 16 24 24 H 1.48504 * 109.47170 * 92.66203 * 23 21 19 25 25 H 1.48504 * 109.47197 * 212.65664 * 23 21 19 26 26 H 1.48493 * 109.47403 * 332.65750 * 23 21 19 27 27 H 1.09003 * 109.47020 * 306.61251 * 1 2 3 28 28 H 1.09004 * 109.47000 * 66.60774 * 1 2 3 29 29 H 1.08992 * 109.47150 * 186.61005 * 1 2 3 30 30 H 1.09005 * 109.46646 * 240.00161 * 2 1 3 31 31 H 1.08999 * 109.46989 * 120.00507 * 2 1 3 32 32 H 1.08003 * 119.99450 * 0.02639 * 4 3 2 33 33 H 1.08001 * 119.99968 * 179.79484 * 5 4 3 34 34 H 1.07994 * 120.00359 * 179.97438 * 10 6 5 35 35 H 0.97003 * 120.00041 * 244.65308 * 15 12 11 36 36 H 1.08999 * 109.47057 * 60.00035 * 18 16 15 37 37 H 1.08998 * 109.46714 * 179.97438 * 18 16 15 38 38 H 1.08997 * 109.46644 * 299.99463 * 18 16 15 39 39 H 0.97002 * 119.99657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2096 2.0914 -1.1959 5 6 2.6747 3.3929 -1.1961 6 6 2.9593 4.0255 -0.0002 7 7 3.4580 5.4191 -0.0004 8 8 3.7092 5.9762 1.0532 9 8 3.6173 6.0087 -1.0541 10 6 2.7782 3.3565 1.1957 11 6 2.3123 2.0547 1.1958 12 16 2.0811 1.2020 2.7203 13 8 0.7779 0.6377 2.6708 14 8 2.5050 2.0903 3.7452 15 7 3.1413 -0.0701 2.7360 16 6 4.5847 0.1795 2.7516 17 1 4.7885 1.1605 2.3223 18 6 5.0939 0.1382 4.1939 19 6 5.2864 -0.8793 1.9406 20 1 4.7244 -1.7037 1.5272 21 6 6.6459 -0.7955 1.7264 22 7 7.2716 -1.7599 1.0876 23 14 7.5989 0.6878 2.3435 24 1 8.1381 0.4015 3.6973 25 1 8.7212 0.9765 1.4148 26 1 6.6955 1.8644 2.4091 27 1 -0.3633 0.6129 0.8249 28 1 -0.3633 0.4080 -0.9432 29 1 -0.3633 -1.0208 0.1183 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9876 1.5972 -2.1302 33 1 2.8163 3.9156 -2.1306 34 1 3.0008 3.8504 2.1299 35 1 2.8064 -0.9805 2.7389 36 1 4.8902 -0.8428 4.6231 37 1 6.1680 0.3235 4.2053 38 1 4.5864 0.9041 4.7803 39 1 8.2279 -1.7008 0.9366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171092775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:46 Heat of formation + Delta-G solvation = -51.962908 kcal Electronic energy + Delta-G solvation = -27107.282854 eV Core-core repulsion = 23145.547043 eV Total energy + Delta-G solvation = -3961.735812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 6.64 seconds Orbital eigenvalues (eV) -42.24574 -39.90152 -37.27165 -36.61673 -36.00962 -35.73873 -34.57230 -32.41270 -31.88818 -30.55591 -29.38307 -26.60606 -25.29872 -23.99087 -23.62642 -21.58587 -21.21886 -20.14351 -19.00197 -18.76268 -17.81647 -17.58593 -16.66981 -16.52538 -16.22227 -16.20554 -15.56957 -14.76221 -14.54476 -14.12819 -13.90295 -13.67954 -13.22598 -13.15364 -12.77693 -12.59731 -12.32715 -12.31227 -12.10387 -11.91593 -11.82614 -11.62152 -11.50001 -11.41853 -11.34440 -11.18363 -11.03719 -10.95016 -10.79043 -10.36759 -9.99587 -9.85366 -9.58892 -9.56635 -8.97287 -8.73131 -6.35173 -4.38195 -0.30000 0.30550 0.57802 1.18399 1.30640 2.79439 3.11066 3.20397 3.21391 3.24952 3.77370 4.05671 4.16633 4.20645 4.28559 4.45022 4.60943 4.86705 4.96349 5.03973 5.15763 5.16679 5.28244 5.38815 5.52536 5.61450 5.77082 5.87199 5.96383 5.97825 6.10600 6.29779 6.34120 6.39168 6.46623 6.84765 7.06544 7.21351 7.58570 7.60678 8.20539 8.65139 9.24230 10.76634 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.006358 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.036412 B = 4403.184043 C = 5474.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.084 3.916 4 C -0.136 4.136 5 C -0.005 4.005 6 C -0.075 4.075 7 N 0.033 4.967 8 O -0.157 6.157 9 O -0.163 6.163 10 C 0.048 3.952 11 C -0.675 4.675 12 S 2.690 3.310 13 O -0.958 6.958 14 O -0.955 6.955 15 N -1.088 6.088 16 C 0.244 3.756 17 H 0.038 0.962 18 C -0.169 4.169 19 C -0.530 4.530 20 H 0.085 0.915 21 C 0.081 3.919 22 N -0.887 5.887 23 Si 0.867 3.133 24 H -0.270 1.270 25 H -0.288 1.288 26 H -0.263 1.263 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.701 5.023 -3.975 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C 0.083 3.917 4 C -0.155 4.155 5 C -0.024 4.024 6 C -0.159 4.159 7 N 0.552 4.448 8 O -0.373 6.373 9 O -0.378 6.378 10 C 0.027 3.973 11 C -0.758 4.758 12 S 2.775 3.225 13 O -0.948 6.948 14 O -0.944 6.944 15 N -0.850 5.850 16 C 0.139 3.861 17 H 0.055 0.945 18 C -0.229 4.229 19 C -0.569 4.569 20 H 0.103 0.897 21 C -0.124 4.124 22 N -0.524 5.524 23 Si 0.695 3.305 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.188 1.188 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.253 0.747 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.270 4.724 -3.437 13.590 hybrid contribution 1.287 0.908 -0.550 1.669 sum -10.982 5.633 -3.987 12.971 Atomic orbital electron populations 1.21852 0.92237 1.03840 1.02727 1.21146 0.98096 0.90363 1.05946 1.20080 0.84598 0.95636 0.91424 1.21221 1.01788 0.93459 0.99076 1.21263 0.89675 0.94414 0.97083 1.21112 1.13602 0.84055 0.97146 1.43503 0.98087 1.02684 1.00511 1.94572 1.53739 1.68376 1.20652 1.94511 1.56564 1.65944 1.20790 1.20799 0.86265 0.91788 0.98400 1.31345 1.16073 1.06074 1.22334 1.02183 0.73221 0.73659 0.73399 1.93579 1.36874 1.77543 1.86791 1.93586 1.82610 1.65901 1.52348 1.55383 1.18733 1.20812 1.90105 1.18982 0.75401 0.97837 0.93929 0.94473 1.22543 1.00311 1.01461 0.98550 1.21029 0.93232 1.09398 1.33266 0.89700 1.24839 0.97355 0.95757 0.94405 1.69857 1.09955 1.31782 1.40774 0.87098 0.80410 0.83964 0.79042 1.19569 1.21475 1.18754 0.89970 0.92822 0.91132 0.88281 0.89340 0.82649 0.82337 0.81187 0.74687 0.92082 0.93023 0.93587 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.42 37.16 0.35 -1.20 16 2 C -0.12 -1.39 5.30 -27.88 -0.15 -1.53 16 3 C 0.08 1.09 5.12 -104.63 -0.54 0.56 16 4 C -0.14 -1.49 9.71 -39.58 -0.38 -1.87 16 5 C -0.01 -0.06 9.56 -39.58 -0.38 -0.44 16 6 C -0.08 -1.10 6.85 -79.95 -0.55 -1.65 16 7 N 0.03 0.52 4.45 33.96 0.15 0.67 16 8 O -0.16 -2.66 18.45 -29.46 -0.54 -3.21 16 9 O -0.16 -2.53 18.45 -29.46 -0.54 -3.08 16 10 C 0.05 0.73 9.06 -39.58 -0.36 0.37 16 11 C -0.67 -10.15 5.73 -39.58 -0.23 -10.38 16 12 S 2.69 43.24 4.84 -107.50 -0.52 42.72 16 13 O -0.96 -15.10 14.34 -57.17 -0.82 -15.92 16 14 O -0.95 -17.64 16.27 -57.17 -0.93 -18.57 16 15 N -1.09 -18.47 4.30 -5.88 -0.03 -18.50 16 16 C 0.24 5.09 2.34 -69.08 -0.16 4.93 16 17 H 0.04 0.80 6.38 -51.93 -0.33 0.47 16 18 C -0.17 -3.44 9.12 37.16 0.34 -3.10 16 19 C -0.53 -12.91 9.27 -34.44 -0.32 -13.23 16 20 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 21 C 0.08 2.11 5.44 -17.82 -0.10 2.02 16 22 N -0.89 -24.72 13.96 55.43 0.77 -23.95 16 23 Si 0.87 20.22 24.80 -169.99 -4.22 16.00 16 24 H -0.27 -6.13 6.91 56.52 0.39 -5.74 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.26 -5.94 6.31 56.52 0.36 -5.58 16 27 H 0.08 0.99 6.22 -51.93 -0.32 0.67 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.09 1.13 4.88 -51.93 -0.25 0.87 16 32 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.16 1.45 7.61 -52.49 -0.40 1.05 16 34 H 0.17 2.58 6.89 -52.49 -0.36 2.22 16 35 H 0.42 6.23 8.39 -34.47 -0.29 5.94 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 1.09 4.27 -51.93 -0.22 0.86 16 38 H 0.05 0.87 7.68 -51.93 -0.40 0.47 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -30.28 336.36 -8.38 -38.65 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.30 Total: 5.62 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -2.47 Total: -25.53 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.90 Total: -41.77 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -2.84 Total: -40.77 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.22 Total: 16.00 kcal Atomic # 16 Polarization: 43.24 SS G_CDS: -0.52 Total: 42.72 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.28 -8.38 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.308 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.64 seconds