Wall clock time and date at job start Tue Mar 31 2020 15:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47104 * 2 1 4 4 C 1.38258 * 120.00560 * 272.70409 * 3 2 1 5 5 C 1.38210 * 120.00408 * 180.22708 * 4 3 2 6 6 C 1.38257 * 120.00013 * 359.81932 * 5 4 3 7 7 N 1.48013 * 120.00013 * 179.97438 * 6 5 4 8 8 O 1.21801 * 119.99994 * 180.02562 * 7 6 5 9 9 O 1.21795 * 120.00085 * 0.02562 * 7 6 5 10 10 C 1.38215 * 119.99908 * 359.97438 * 6 5 4 11 11 C 1.38213 * 119.99741 * 92.51696 * 3 2 1 12 12 S 1.76197 * 120.00242 * 359.97438 * 11 3 2 13 13 O 1.42106 * 106.40048 * 310.46925 * 12 11 3 14 14 O 1.42097 * 106.40218 * 177.54870 * 12 11 3 15 15 N 1.65602 * 107.21590 * 64.00728 * 12 11 3 16 16 C 1.46497 * 119.99801 * 64.93294 * 15 12 11 17 17 H 1.08999 * 109.47161 * 335.34530 * 16 15 12 18 18 C 1.53009 * 109.47051 * 95.34431 * 16 15 12 19 19 C 1.50698 * 109.46955 * 215.34146 * 16 15 12 20 20 H 1.08002 * 120.00162 * 355.12798 * 19 16 15 21 21 C 1.37881 * 120.00125 * 175.12490 * 19 16 15 22 22 N 1.31513 * 120.00184 * 175.92390 * 21 19 16 23 23 Si 1.86800 * 119.99662 * 355.92945 * 21 19 16 24 24 H 1.48504 * 109.47170 * 92.66203 * 23 21 19 25 25 H 1.48504 * 109.47197 * 212.65664 * 23 21 19 26 26 H 1.48493 * 109.47403 * 332.65750 * 23 21 19 27 27 H 1.09003 * 109.47020 * 306.61251 * 1 2 3 28 28 H 1.09004 * 109.47000 * 66.60774 * 1 2 3 29 29 H 1.08992 * 109.47150 * 186.61005 * 1 2 3 30 30 H 1.09005 * 109.46646 * 240.00161 * 2 1 3 31 31 H 1.08999 * 109.46989 * 120.00507 * 2 1 3 32 32 H 1.08003 * 119.99450 * 0.02639 * 4 3 2 33 33 H 1.08001 * 119.99968 * 179.79484 * 5 4 3 34 34 H 1.07994 * 120.00359 * 179.97438 * 10 6 5 35 35 H 0.97003 * 120.00041 * 244.65308 * 15 12 11 36 36 H 1.08999 * 109.47057 * 60.00035 * 18 16 15 37 37 H 1.08998 * 109.46714 * 179.97438 * 18 16 15 38 38 H 1.08997 * 109.46644 * 299.99463 * 18 16 15 39 39 H 0.97002 * 119.99657 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2096 2.0914 -1.1959 5 6 2.6747 3.3929 -1.1961 6 6 2.9593 4.0255 -0.0002 7 7 3.4580 5.4191 -0.0004 8 8 3.7092 5.9762 1.0532 9 8 3.6173 6.0087 -1.0541 10 6 2.7782 3.3565 1.1957 11 6 2.3123 2.0547 1.1958 12 16 2.0811 1.2020 2.7203 13 8 0.7779 0.6377 2.6708 14 8 2.5050 2.0903 3.7452 15 7 3.1413 -0.0701 2.7360 16 6 4.5847 0.1795 2.7516 17 1 4.7885 1.1605 2.3223 18 6 5.0939 0.1382 4.1939 19 6 5.2864 -0.8793 1.9406 20 1 4.7244 -1.7037 1.5272 21 6 6.6459 -0.7955 1.7264 22 7 7.2716 -1.7599 1.0876 23 14 7.5989 0.6878 2.3435 24 1 8.1381 0.4015 3.6973 25 1 8.7212 0.9765 1.4148 26 1 6.6955 1.8644 2.4091 27 1 -0.3633 0.6129 0.8249 28 1 -0.3633 0.4080 -0.9432 29 1 -0.3633 -1.0208 0.1183 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.9876 1.5972 -2.1302 33 1 2.8163 3.9156 -2.1306 34 1 3.0008 3.8504 2.1299 35 1 2.8064 -0.9805 2.7389 36 1 4.8902 -0.8428 4.6231 37 1 6.1680 0.3235 4.2053 38 1 4.5864 0.9041 4.7803 39 1 8.2279 -1.7008 0.9366 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171092775.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:39 Heat of formation + Delta-G solvation = -71.975038 kcal Electronic energy + Delta-G solvation = -27108.150645 eV Core-core repulsion = 23145.547043 eV Total energy + Delta-G solvation = -3962.603603 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -43.43653 -40.93028 -38.59938 -37.83817 -37.59682 -37.08831 -35.58761 -34.29937 -32.91516 -31.54503 -30.99046 -27.68722 -27.16657 -25.05883 -24.61209 -22.91195 -22.56833 -21.34479 -20.35574 -19.96655 -19.32842 -18.79943 -18.13972 -17.78291 -17.68303 -17.19206 -16.99113 -16.18323 -15.51766 -15.41366 -15.09275 -14.88892 -14.74049 -14.34673 -14.14861 -14.02970 -13.79409 -13.68951 -13.35206 -13.25506 -13.11951 -13.03936 -12.85987 -12.60981 -12.51789 -12.43683 -12.43061 -12.16555 -11.99887 -11.89317 -11.71712 -11.32216 -11.04603 -10.85664 -10.57084 -10.36306 -8.36054 -6.39431 -1.41849 -0.86115 -0.60959 0.06778 0.16955 1.25720 1.33836 1.36812 1.71872 1.95703 2.24209 2.51400 2.99005 3.03999 3.21607 3.23532 3.42662 3.57799 3.77606 4.06944 4.16271 4.24934 4.28342 4.32335 4.43820 4.46810 4.67510 4.71772 4.73885 4.84303 4.96350 5.07689 5.12409 5.20362 5.24187 5.40981 5.44306 5.49836 6.17863 6.25024 6.34954 6.67556 7.25506 8.78680 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.006358 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.036412 B = 4403.184043 C = 5474.120549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.078 3.922 4 C -0.122 4.122 5 C 0.004 3.996 6 C -0.090 4.090 7 N 0.033 4.967 8 O -0.205 6.205 9 O -0.139 6.139 10 C 0.030 3.970 11 C -0.689 4.689 12 S 2.704 3.296 13 O -0.955 6.955 14 O -0.982 6.982 15 N -1.086 6.086 16 C 0.247 3.753 17 H 0.034 0.966 18 C -0.173 4.173 19 C -0.515 4.515 20 H 0.068 0.932 21 C 0.037 3.963 22 N -0.930 5.930 23 Si 0.904 3.096 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.255 1.255 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.202 0.798 33 H 0.191 0.809 34 H 0.160 0.840 35 H 0.425 0.575 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.057 0.943 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 5.111 -5.753 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.076 3.924 4 C -0.141 4.141 5 C -0.015 4.015 6 C -0.174 4.174 7 N 0.549 4.451 8 O -0.410 6.410 9 O -0.363 6.363 10 C 0.010 3.990 11 C -0.775 4.775 12 S 2.792 3.208 13 O -0.945 6.945 14 O -0.973 6.973 15 N -0.848 5.848 16 C 0.140 3.860 17 H 0.052 0.948 18 C -0.232 4.232 19 C -0.555 4.555 20 H 0.086 0.914 21 C -0.164 4.164 22 N -0.569 5.569 23 Si 0.730 3.270 24 H -0.186 1.186 25 H -0.219 1.219 26 H -0.179 1.179 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.219 0.781 33 H 0.208 0.792 34 H 0.177 0.823 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.442 4.812 -5.069 15.151 hybrid contribution 1.513 0.832 -0.149 1.733 sum -11.929 5.644 -5.218 14.190 Atomic orbital electron populations 1.21866 0.91157 1.04249 1.03306 1.21295 0.99007 0.89517 1.06376 1.20443 0.84012 0.96380 0.91515 1.21745 0.99636 0.92801 0.99911 1.21745 0.87972 0.94685 0.97055 1.21302 1.14717 0.83313 0.98099 1.43713 0.97832 1.03260 1.00268 1.94584 1.56171 1.69240 1.21012 1.94468 1.55068 1.66185 1.20556 1.20778 0.87309 0.92239 0.98698 1.31053 1.17962 1.06013 1.22448 1.01558 0.72832 0.72991 0.73374 1.93585 1.36346 1.77554 1.87006 1.93549 1.82998 1.66413 1.54291 1.55203 1.17225 1.21871 1.90496 1.18740 0.77103 0.96402 0.93714 0.94818 1.22548 0.99899 1.02500 0.98254 1.21249 0.92952 1.09177 1.32095 0.91408 1.25404 0.98485 0.97503 0.94992 1.69956 1.10216 1.33619 1.43100 0.86479 0.79494 0.82050 0.78934 1.18625 1.21915 1.17887 0.91985 0.90280 0.90234 0.85941 0.90892 0.78102 0.79156 0.82279 0.73708 0.91178 0.93817 0.92382 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.42 71.98 0.68 -1.98 16 2 C -0.12 -2.58 5.30 29.85 0.16 -2.42 16 3 C 0.08 1.83 5.12 -19.87 -0.10 1.72 16 4 C -0.12 -2.14 9.71 22.27 0.22 -1.92 16 5 C 0.00 0.08 9.56 22.27 0.21 0.30 16 6 C -0.09 -2.51 6.85 36.38 0.25 -2.26 16 7 N 0.03 1.01 4.45 -46.47 -0.21 0.81 16 8 O -0.21 -7.12 18.45 18.88 0.35 -6.77 16 9 O -0.14 -4.05 18.45 18.89 0.35 -3.70 16 10 C 0.03 0.92 9.06 22.27 0.20 1.12 16 11 C -0.69 -20.02 5.73 22.27 0.13 -19.89 16 12 S 2.70 85.68 4.84 -56.49 -0.27 85.41 16 13 O -0.95 -29.35 14.34 -128.00 -1.84 -31.19 16 14 O -0.98 -36.49 16.27 -128.00 -2.08 -38.57 16 15 N -1.09 -36.12 4.30 -172.52 -0.74 -36.86 16 16 C 0.25 10.14 2.34 44.25 0.10 10.24 16 17 H 0.03 1.43 6.38 -2.39 -0.02 1.42 16 18 C -0.17 -6.85 9.12 71.99 0.66 -6.19 16 19 C -0.52 -24.91 9.27 25.60 0.24 -24.68 16 20 H 0.07 3.46 8.06 -2.91 -0.02 3.44 16 21 C 0.04 1.90 5.44 84.66 0.46 2.36 16 22 N -0.93 -52.17 13.96 21.45 0.30 -51.87 16 23 Si 0.90 41.08 24.80 68.60 1.70 42.79 16 24 H -0.26 -11.40 6.91 99.48 0.69 -10.72 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.25 -11.12 6.31 99.48 0.63 -10.50 16 27 H 0.06 1.37 6.22 -2.39 -0.01 1.36 16 28 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.12 1.95 8.10 -2.38 -0.02 1.93 16 31 H 0.07 1.74 4.88 -2.39 -0.01 1.73 16 32 H 0.20 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.19 2.55 7.61 -2.91 -0.02 2.52 16 34 H 0.16 5.06 6.89 -2.91 -0.02 5.04 16 35 H 0.43 12.43 8.39 -96.74 -0.81 11.62 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.04 1.78 4.27 -2.39 -0.01 1.77 16 38 H 0.06 2.14 7.68 -2.39 -0.02 2.12 16 39 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -65.48 336.36 0.96 -64.52 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.20 Total: 19.04 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 3.20 Total: -43.60 kcal Atomic # 7 Polarization: -87.27 SS G_CDS: -0.65 Total: -87.92 kcal Atomic # 8 Polarization: -77.02 SS G_CDS: -3.22 Total: -80.24 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.70 Total: 42.79 kcal Atomic # 16 Polarization: 85.68 SS G_CDS: -0.27 Total: 85.41 kcal Total: -65.48 0.96 -64.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171092775.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.454 kcal (2) G-P(sol) polarization free energy of solvation -65.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds