Wall clock time and date at job start Tue Mar 31 2020 14:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35912 * 117.00151 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.96876 * 359.71928 * 12 11 10 14 14 C 1.38288 * 120.29631 * 179.76737 * 13 12 11 15 15 C 1.37936 * 120.22889 * 0.51495 * 14 13 12 16 16 C 1.39853 * 119.93923 * 359.74085 * 15 14 13 17 17 C 1.47174 * 120.14693 * 180.02562 * 16 15 14 18 18 C 1.34910 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.46414 * 120.00047 * 180.02562 * 18 17 16 20 20 O 1.21804 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.47294 * 120.00142 * 180.02562 * 19 18 17 22 22 C 1.44412 * 123.47172 * 179.72936 * 21 19 18 23 23 C 1.32774 * 113.09306 * 179.76855 * 22 21 19 24 24 S 1.75505 * 110.59105 * 0.48091 * 23 22 21 25 25 C 1.36125 * 123.47222 * 0.02718 * 21 19 18 26 26 C 1.38371 * 119.96847 * 180.02562 * 12 11 10 27 27 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08007 * 119.84866 * 0.02562 * 13 12 11 33 33 H 1.07998 * 119.88987 * 180.25203 * 14 13 12 34 34 H 1.08004 * 120.02949 * 179.77042 * 15 14 13 35 35 H 1.08002 * 119.99825 * 179.97438 * 17 16 15 36 36 H 1.07997 * 120.00210 * 0.02562 * 18 17 16 37 37 H 1.08001 * 123.45071 * 0.02562 * 22 21 19 38 38 H 1.07997 * 124.70078 * 180.22192 * 23 22 21 39 39 H 1.07999 * 124.59532 * 0.02562 * 25 21 19 40 40 H 1.07998 * 120.11955 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4506 -2.6364 0.0034 12 6 6.0677 -3.8474 0.0040 13 6 5.3106 -5.0120 0.0094 14 6 5.9314 -6.2477 0.0052 15 6 7.3081 -6.3333 0.0063 16 6 8.0799 -5.1670 0.0063 17 6 9.5491 -5.2529 0.0069 18 6 10.1542 -6.4587 0.0081 19 6 11.6159 -6.5442 0.0093 20 8 12.2855 -5.5267 0.0097 21 6 12.2766 -7.8606 0.0100 22 6 13.7105 -8.0321 0.0055 23 6 14.0826 -9.3066 0.0120 24 16 12.6785 -10.3596 0.0102 25 6 11.5986 -9.0410 0.0090 26 6 7.4496 -3.9190 0.0057 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.6799 0.8911 29 1 3.8752 -0.6803 -0.8888 30 1 3.6587 -3.1509 -0.8875 31 1 3.6580 -3.1497 0.8925 32 1 4.2322 -4.9521 0.0127 33 1 5.3363 -7.1490 0.0053 34 1 7.7895 -7.3000 0.0068 35 1 10.1428 -4.3507 0.0065 36 1 9.5606 -7.3608 0.0081 37 1 14.4086 -7.2080 0.0017 38 1 15.1072 -9.6480 0.0136 39 1 10.5223 -9.1299 0.0073 40 1 8.0391 -3.0141 0.0061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171149218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:53 Heat of formation + Delta-G solvation = -24.920310 kcal Electronic energy + Delta-G solvation = -22577.673591 eV Core-core repulsion = 19027.959697 eV Total energy + Delta-G solvation = -3549.713893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16019 -40.61466 -38.76523 -37.74502 -35.50334 -34.82129 -32.96455 -31.84502 -30.99819 -29.88335 -27.27533 -26.56721 -24.83714 -23.61531 -23.09455 -21.98490 -20.71367 -19.53990 -19.35186 -18.84136 -18.26526 -17.62725 -17.04988 -17.01683 -16.70155 -16.28363 -15.92091 -15.65705 -15.22328 -14.88652 -14.72180 -14.53354 -14.33967 -14.29113 -13.95398 -13.71822 -13.44187 -13.38676 -13.30643 -13.05252 -12.68774 -12.46708 -12.24993 -12.05816 -11.97356 -11.79106 -11.69747 -11.44382 -11.18850 -10.85799 -10.83071 -9.99441 -9.56281 -9.36433 -9.10150 -8.36515 -6.43170 -0.79911 -0.10289 0.45487 0.64938 0.70826 0.97708 1.34556 1.36284 1.37925 1.48557 2.25700 2.31509 2.37654 2.86583 2.98637 3.03168 3.75679 3.82714 3.87040 3.97808 4.14796 4.19865 4.20856 4.26874 4.33860 4.39208 4.47178 4.51100 4.54111 4.64940 4.83836 4.91658 5.02316 5.10200 5.13230 5.22285 5.28143 5.32150 5.40907 5.43452 5.50405 5.58113 5.79344 6.14336 6.46593 6.54113 6.62543 7.22236 8.78994 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.035538 B = 0.001659 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.699464 B =16869.789175 C =17637.040834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.537 4.537 8 H 0.044 0.956 9 C -0.007 4.007 10 C 0.086 3.914 11 O -0.337 6.337 12 C 0.106 3.894 13 C -0.208 4.208 14 C -0.078 4.078 15 C -0.133 4.133 16 C -0.047 4.047 17 C -0.014 4.014 18 C -0.221 4.221 19 C 0.440 3.560 20 O -0.504 6.504 21 C -0.213 4.213 22 C -0.118 4.118 23 C -0.240 4.240 24 S 0.238 5.762 25 C -0.188 4.188 26 C -0.147 4.147 27 H 0.270 0.730 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.129 0.871 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.189 0.811 39 H 0.202 0.798 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.455 -25.603 0.021 37.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.176 1.176 7 C -0.575 4.575 8 H 0.062 0.938 9 C -0.045 4.045 10 C 0.012 3.988 11 O -0.251 6.251 12 C 0.061 3.939 13 C -0.226 4.226 14 C -0.095 4.095 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.033 4.033 18 C -0.239 4.239 19 C 0.323 3.677 20 O -0.387 6.387 21 C -0.228 4.228 22 C -0.146 4.146 23 C -0.375 4.375 24 S 0.503 5.497 25 C -0.326 4.326 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.143 0.857 36 H 0.184 0.816 37 H 0.159 0.841 38 H 0.207 0.793 39 H 0.219 0.781 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 27.550 -26.370 0.024 38.137 hybrid contribution -0.334 2.785 -0.018 2.805 sum 27.216 -23.585 0.006 36.014 Atomic orbital electron populations 1.70017 1.08027 1.28491 1.51496 1.25844 0.95596 1.03182 0.93661 0.85713 0.79427 0.78524 0.79378 1.19024 1.20413 1.17572 1.21113 0.90477 0.93957 1.51981 0.93752 1.19450 0.94426 0.92859 0.97765 1.22695 0.75720 0.99523 1.00886 1.86049 1.22934 1.27757 1.88403 1.19301 0.92835 0.84935 0.96853 1.21728 1.00918 0.92995 1.06992 1.21246 0.95039 0.97068 0.96195 1.21643 0.93448 0.98507 1.01458 1.18810 0.92582 0.92604 1.00768 1.22455 0.91932 0.98978 0.89892 1.23526 0.94134 0.99687 1.06541 1.20274 0.89370 0.87295 0.70791 1.90658 1.68735 1.39178 1.40084 1.20775 0.94121 0.94591 1.13363 1.21317 0.94026 0.97864 1.01396 1.25856 1.04804 0.96306 1.10507 1.83043 0.93219 1.06573 1.66816 1.26240 1.07110 0.96757 1.02475 1.20762 0.91270 0.98805 1.05742 0.92087 0.95525 0.95602 0.92128 0.92157 0.85268 0.82254 0.81730 0.85735 0.81618 0.84139 0.79345 0.78148 0.84959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.96 21.45 0.30 -57.50 16 2 C 0.02 0.90 5.47 84.65 0.46 1.36 16 3 Si 0.95 44.20 27.47 68.60 1.88 46.08 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.54 -30.60 9.66 25.60 0.25 -30.35 16 8 H 0.04 2.71 7.99 -2.91 -0.02 2.69 16 9 C -0.01 -0.36 4.41 29.85 0.13 -0.23 16 10 C 0.09 3.50 4.68 71.98 0.34 3.83 16 11 O -0.34 -12.92 10.13 -92.56 -0.94 -13.85 16 12 C 0.11 3.38 6.68 22.46 0.15 3.53 16 13 C -0.21 -5.63 9.04 22.44 0.20 -5.43 16 14 C -0.08 -1.51 10.02 22.21 0.22 -1.29 16 15 C -0.13 -2.27 9.41 22.59 0.21 -2.06 16 16 C -0.05 -1.03 5.87 -20.16 -0.12 -1.15 16 17 C -0.01 -0.27 9.46 23.85 0.23 -0.05 16 18 C -0.22 -3.46 8.98 23.63 0.21 -3.25 16 19 C 0.44 8.88 7.08 26.78 0.19 9.07 16 20 O -0.50 -14.01 16.69 -4.68 -0.08 -14.09 16 21 C -0.21 -3.34 5.99 -19.82 -0.12 -3.46 16 22 C -0.12 -1.79 10.11 22.67 0.23 -1.56 16 23 C -0.24 -2.28 11.12 66.64 0.74 -1.54 16 24 S 0.24 1.52 23.02 -56.49 -1.30 0.22 16 25 C -0.19 -1.69 10.32 67.33 0.69 -0.99 16 26 C -0.15 -4.05 9.73 22.68 0.22 -3.83 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 28 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 29 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 30 H 0.06 2.37 7.67 -2.39 -0.02 2.35 16 31 H 0.06 2.36 7.65 -2.39 -0.02 2.34 16 32 H 0.13 3.56 6.28 -2.91 -0.02 3.54 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.17 1.43 6.16 -2.91 -0.02 1.41 16 35 H 0.12 2.69 7.52 -2.91 -0.02 2.67 16 36 H 0.17 1.33 4.78 -2.91 -0.01 1.32 16 37 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 38 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.20 0.55 6.88 -2.91 -0.02 0.53 16 40 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -72.79 360.26 5.12 -67.67 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.01 Total: 8.87 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 4.24 Total: -37.39 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.30 Total: -57.50 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.02 Total: -27.95 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.30 Total: 0.22 kcal Total: -72.79 5.12 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171149218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.747 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds