Wall clock time and date at job start Tue Mar 31 2020 15:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 119.99885 * 2 1 4 4 C 1.38212 * 119.99458 * 180.02562 * 3 2 1 5 5 S 1.76207 * 119.99439 * 179.97438 * 4 3 2 6 6 O 1.42096 * 106.40326 * 336.46116 * 5 4 3 7 7 O 1.42102 * 106.40186 * 203.53924 * 5 4 3 8 8 N 1.65603 * 107.21729 * 90.00303 * 5 4 3 9 9 C 1.46499 * 120.00203 * 64.72141 * 8 5 4 10 10 C 1.53001 * 109.46940 * 165.27905 * 9 8 5 11 11 C 1.53005 * 109.46919 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.46916 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00441 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00011 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00033 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47220 * 59.99117 * 16 14 12 18 18 H 1.48497 * 109.47456 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46741 * 299.99620 * 16 14 12 20 20 C 1.38254 * 120.00532 * 0.25114 * 4 3 2 21 21 C 1.38206 * 119.99726 * 359.47582 * 20 4 3 22 22 C 1.38214 * 119.99580 * 180.02562 * 2 1 3 23 23 N 1.48012 * 120.00442 * 359.97438 * 22 2 1 24 24 O 1.21803 * 120.00138 * 186.43213 * 23 22 2 25 25 O 1.21803 * 120.00262 * 6.43164 * 23 22 2 26 26 H 1.09005 * 109.47232 * 96.87597 * 1 2 3 27 27 H 1.09000 * 109.47049 * 216.87389 * 1 2 3 28 28 H 1.09002 * 109.47212 * 336.87164 * 1 2 3 29 29 H 1.07997 * 120.00174 * 0.02562 * 3 2 1 30 30 H 0.96999 * 119.99676 * 244.99794 * 8 5 4 31 31 H 1.09005 * 109.46985 * 285.27500 * 9 8 5 32 32 H 1.08991 * 109.46866 * 45.27593 * 9 8 5 33 33 H 1.09005 * 109.46951 * 299.99616 * 10 9 8 34 34 H 1.08997 * 109.47738 * 59.99746 * 10 9 8 35 35 H 1.08996 * 109.46955 * 299.99689 * 11 10 9 36 36 H 1.08998 * 109.46908 * 59.99918 * 11 10 9 37 37 H 0.96998 * 120.00433 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.00285 * 179.72450 * 20 4 3 39 39 H 1.08007 * 120.00082 * 180.27335 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 16 4.4614 2.7232 -0.0012 6 8 3.5795 3.6955 -0.5455 7 8 5.7441 2.4458 -0.5461 8 7 4.7071 3.1481 1.5804 9 6 5.5507 2.3143 2.4403 10 6 5.9134 3.0917 3.7072 11 6 6.7950 2.2211 4.6049 12 6 7.1527 2.9871 5.8524 13 1 6.7882 3.9943 5.9910 14 6 7.9463 2.4025 6.8165 15 7 8.3906 1.1763 6.6477 16 14 8.3892 3.3517 8.3633 17 1 7.1481 3.7164 9.0927 18 1 9.2449 2.5069 9.2346 19 1 9.1262 4.5864 7.9923 20 6 4.2717 -0.0001 -0.0063 21 6 3.5806 -1.1970 -0.0006 22 6 2.1980 -1.1970 -0.0005 23 7 1.4579 -2.4788 -0.0005 24 8 2.0612 -3.5304 0.1172 25 8 0.2456 -2.4822 -0.1182 26 1 -0.3634 -0.1230 -1.0203 27 1 -0.3633 -0.8221 0.6167 28 1 -0.3634 0.9451 0.4037 29 1 1.6583 2.1326 0.0004 30 1 4.2893 3.9468 1.9386 31 1 5.0089 1.4084 2.7125 32 1 6.4616 2.0459 1.9053 33 1 6.4552 3.9976 3.4350 34 1 5.0025 3.3602 4.2421 35 1 6.2536 1.3151 4.8771 36 1 7.7059 1.9532 4.0697 37 1 8.9486 0.7648 7.3261 38 1 5.3516 -0.0001 -0.0112 39 1 4.1207 -2.1323 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172020548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:14 Heat of formation + Delta-G solvation = -83.119828 kcal Electronic energy + Delta-G solvation = -25180.501067 eV Core-core repulsion = 21217.414190 eV Total energy + Delta-G solvation = -3963.086877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52042 -40.75339 -38.55279 -37.94145 -37.42719 -37.13803 -35.18369 -34.40330 -33.34470 -32.65823 -29.08579 -28.22247 -27.43148 -24.80381 -24.21214 -23.61378 -22.25593 -20.77403 -20.18001 -19.91165 -19.01201 -18.84326 -18.58564 -18.34532 -17.45048 -16.76602 -16.46566 -16.12222 -16.01369 -15.70951 -15.17409 -15.07536 -14.67391 -14.30383 -14.08848 -13.95278 -13.81601 -13.56189 -13.38220 -13.31231 -13.25630 -12.83171 -12.77133 -12.67722 -12.57559 -12.53036 -12.38198 -12.34074 -11.80630 -11.67145 -11.40156 -11.26255 -11.15176 -10.54322 -10.50821 -10.35464 -8.18249 -6.28134 -1.68778 -0.86029 -0.32826 -0.14050 0.12811 1.42696 1.44151 1.51974 1.62180 1.94673 2.42737 2.52924 2.91419 3.11914 3.16070 3.19236 3.65623 3.68367 3.91436 3.99516 4.07176 4.26531 4.30615 4.37166 4.45138 4.55081 4.60439 4.67889 4.78817 4.89490 4.98823 5.00745 5.19135 5.23589 5.33898 5.55867 5.77665 5.88581 6.01461 6.26922 6.34791 6.89415 7.41136 8.92968 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.002929 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.189688 B = 9557.961925 C =10887.658580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.036 4.036 3 C -0.021 4.021 4 C -0.629 4.629 5 S 2.718 3.282 6 O -0.966 6.966 7 O -0.972 6.972 8 N -1.101 6.101 9 C 0.117 3.883 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.543 4.543 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.287 1.287 19 H -0.268 1.268 20 C -0.032 4.032 21 C -0.073 4.073 22 C -0.018 4.018 23 N 0.025 4.975 24 O -0.188 6.188 25 O -0.138 6.138 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.188 0.812 30 H 0.431 0.569 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.000 1.000 36 H -0.003 1.003 37 H 0.263 0.737 38 H 0.178 0.822 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.364 -0.249 -15.609 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.039 4.039 3 C -0.040 4.040 4 C -0.714 4.714 5 S 2.805 3.195 6 O -0.956 6.956 7 O -0.961 6.961 8 N -0.864 5.864 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.017 4.017 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.051 4.051 21 C -0.092 4.092 22 C -0.101 4.101 23 N 0.541 4.459 24 O -0.396 6.396 25 O -0.359 6.359 26 H 0.120 0.880 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.206 0.794 30 H 0.268 0.732 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.071 0.929 38 H 0.196 0.804 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.518 0.470 -16.336 21.861 hybrid contribution -0.064 -0.736 1.395 1.578 sum -14.582 -0.265 -14.942 20.880 Atomic orbital electron populations 1.21451 0.86234 1.06105 1.05425 1.20308 0.99714 0.89891 0.93957 1.21256 0.91529 0.99146 0.92080 1.31616 1.07059 1.21335 1.11431 1.01250 0.73091 0.72798 0.72313 1.93590 1.67070 1.58130 1.76788 1.93600 1.40008 1.85518 1.77019 1.55241 1.63070 1.37760 1.30348 1.21439 0.94091 0.93501 0.91897 1.21622 1.00083 0.98804 0.93961 1.18995 0.94218 0.94839 0.93674 1.21689 1.30868 1.01008 1.04529 0.91988 1.25917 0.96038 0.95860 1.01925 1.70068 1.36007 1.14909 1.36208 0.85585 0.78425 0.78542 0.79000 1.19216 1.21226 1.19331 1.21254 1.02341 0.89226 0.92320 1.21394 0.90845 1.01892 0.95087 1.21497 0.93219 0.83224 1.12134 1.43806 1.01229 1.03112 0.97738 1.94580 1.70142 1.20405 1.54493 1.94462 0.96323 1.93831 1.51279 0.88004 0.88997 0.87777 0.79437 0.73187 0.90752 0.90372 0.91988 0.91373 0.98206 0.98418 0.92868 0.80428 0.80771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.68 71.24 0.62 -0.98 16 2 C -0.04 -0.59 5.88 -19.87 -0.12 -0.71 16 3 C -0.02 -0.31 9.15 22.27 0.20 -0.10 16 4 C -0.63 -10.86 5.94 22.27 0.13 -10.73 16 5 S 2.72 54.08 5.74 -56.49 -0.32 53.76 16 6 O -0.97 -21.69 17.28 -128.00 -2.21 -23.91 16 7 O -0.97 -25.39 16.76 -128.00 -2.15 -27.54 16 8 N -1.10 -21.67 6.00 -187.49 -1.12 -22.80 16 9 C 0.12 3.01 6.22 86.38 0.54 3.55 16 10 C -0.11 -3.58 5.30 30.60 0.16 -3.41 16 11 C 0.02 0.98 4.97 29.85 0.15 1.13 16 12 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 16 Si 0.96 42.58 29.54 68.60 2.03 44.60 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C -0.03 -0.55 9.52 22.27 0.21 -0.34 16 21 C -0.07 -1.30 9.56 22.27 0.21 -1.09 16 22 C -0.02 -0.35 6.83 36.38 0.25 -0.10 16 23 N 0.02 0.57 4.45 -46.46 -0.21 0.36 16 24 O -0.19 -4.85 18.47 18.88 0.35 -4.50 16 25 O -0.14 -3.10 15.36 18.88 0.29 -2.81 16 26 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.09 1.29 5.87 -2.39 -0.01 1.28 16 28 H 0.10 0.71 8.04 -2.39 -0.02 0.70 16 29 H 0.19 1.79 7.62 -2.91 -0.02 1.77 16 30 H 0.43 6.84 8.65 -96.75 -0.84 6.01 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.08 2.08 7.76 -2.39 -0.02 2.06 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 38 H 0.18 2.59 7.61 -2.91 -0.02 2.57 16 39 H 0.17 2.63 7.63 -2.91 -0.02 2.61 16 Total: -1.00 -71.00 352.90 0.25 -70.75 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.26 Total: 7.33 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.05 Total: -41.00 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.05 Total: -76.69 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -3.72 Total: -58.75 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 54.08 SS G_CDS: -0.32 Total: 53.76 kcal Total: -71.00 0.25 -70.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172020548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.370 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds