Wall clock time and date at job start Tue Mar 31 2020 14:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48502 * 109.47059 * 85.73193 * 3 2 1 5 5 H 1.48500 * 109.47060 * 205.72709 * 3 2 1 6 6 H 1.48497 * 109.47385 * 325.72964 * 3 2 1 7 7 C 1.37881 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 3.20481 * 7 2 1 9 9 C 1.50699 * 120.00028 * 183.20307 * 7 2 1 10 10 C 1.52997 * 115.54876 * 272.11253 * 9 7 2 11 11 O 1.42902 * 109.47526 * 294.56065 * 10 9 7 12 12 C 1.34940 * 117.00171 * 184.43457 * 11 10 9 13 13 O 1.21666 * 119.99965 * 5.21935 * 12 11 10 14 14 C 1.41837 * 119.99596 * 185.22446 * 12 11 10 15 15 S 1.75799 * 125.49774 * 353.98295 * 14 12 11 16 16 C 1.70536 * 91.76225 * 180.02562 * 15 14 12 17 17 C 1.33432 * 111.34929 * 359.97438 * 16 15 14 18 18 C 1.37971 * 125.49335 * 173.67773 * 14 12 11 19 19 C 1.48143 * 123.59264 * 359.97438 * 18 14 12 20 20 C 1.39472 * 120.13321 * 309.72071 * 19 18 14 21 21 C 1.37981 * 119.86168 * 179.77177 * 20 19 18 22 22 C 1.38344 * 120.13632 * 0.48326 * 21 20 19 23 23 C 1.38351 * 120.26811 * 359.79440 * 22 21 20 24 24 C 1.37977 * 120.13190 * 359.95089 * 23 22 21 25 25 C 1.52997 * 117.50002 * 126.44284 * 9 7 2 26 26 C 1.52999 * 117.49931 * 57.77955 * 9 7 2 27 27 H 0.96998 * 119.99578 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47229 * 54.56374 * 10 9 7 29 29 H 1.09004 * 109.47102 * 174.55831 * 10 9 7 30 30 H 1.08003 * 124.32675 * 180.02562 * 16 15 14 31 31 H 1.08002 * 122.46915 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.06750 * 359.97438 * 20 19 18 33 33 H 1.07997 * 119.93458 * 180.26058 * 21 20 19 34 34 H 1.07997 * 119.86623 * 179.76545 * 22 21 20 35 35 H 1.07998 * 119.93168 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.06610 * 180.02562 * 24 23 22 37 37 H 1.08997 * 117.49669 * 359.97438 * 25 9 7 38 38 H 1.09000 * 117.49804 * 145.02285 * 25 9 7 39 39 H 1.08997 * 117.50455 * 214.98098 * 26 9 7 40 40 H 1.09003 * 117.49996 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4064 2.0985 1.3962 5 1 3.5890 1.4157 -0.6078 6 1 1.4947 2.6249 -0.7883 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1286 -0.0532 9 6 3.5097 -1.1952 0.0724 10 6 4.2355 -1.1057 -1.2715 11 8 3.9715 -2.2844 -2.0350 12 6 4.6143 -2.4067 -3.2151 13 8 5.4488 -1.5836 -3.5415 14 6 4.3171 -3.4948 -4.0751 15 16 3.2547 -4.8410 -3.6883 16 6 3.5195 -5.5566 -5.2134 17 6 4.3518 -4.8241 -5.9558 18 6 4.8104 -3.6642 -5.3524 19 6 5.7354 -2.7101 -6.0072 20 6 5.4367 -1.3479 -6.0281 21 6 6.3045 -0.4636 -6.6354 22 6 7.4639 -0.9268 -7.2314 23 6 7.7627 -2.2776 -7.2189 24 6 6.9054 -3.1710 -6.6102 25 6 4.1631 -2.0325 1.1737 26 6 4.1593 -0.5050 1.2734 27 1 -0.4849 0.8401 0.0004 28 1 3.8813 -0.2317 -1.8183 29 1 5.3083 -1.0166 -1.0999 30 1 3.0702 -6.4838 -5.5374 31 1 4.6428 -5.1117 -6.9553 32 1 4.5297 -0.9856 -5.5672 33 1 6.0765 0.5920 -6.6486 34 1 8.1382 -0.2312 -7.7087 35 1 8.6691 -2.6333 -7.6861 36 1 7.1400 -4.2252 -6.6007 37 1 3.5041 -2.5823 1.8457 38 1 5.1102 -2.5193 0.9409 39 1 5.1040 0.0125 1.1064 40 1 3.4980 -0.0497 2.0107 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174749524.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:41 Heat of formation + Delta-G solvation = 8.151834 kcal Electronic energy + Delta-G solvation = -24857.974501 eV Core-core repulsion = 21309.694723 eV Total energy + Delta-G solvation = -3548.279778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36838 -39.18932 -37.54351 -36.92796 -35.43707 -32.11170 -31.54517 -30.88885 -29.88973 -27.24990 -25.60756 -24.86472 -22.57388 -22.11009 -21.82870 -21.53373 -19.24942 -18.78089 -18.46449 -17.08091 -16.57199 -16.10044 -15.87256 -15.67969 -14.96355 -14.86401 -14.56476 -14.52295 -13.80661 -13.50305 -13.30387 -13.14379 -12.88770 -12.73136 -12.60713 -12.39054 -12.22982 -12.08475 -11.36152 -11.16117 -11.04654 -10.88415 -10.83323 -10.57457 -10.30871 -10.09217 -9.97885 -9.65584 -9.25236 -9.02676 -8.84642 -8.76148 -8.61690 -8.58460 -8.14941 -6.13238 -4.15729 0.23316 1.32658 1.46749 1.50859 1.92687 2.29847 3.12282 3.25843 3.29447 3.36186 3.40545 3.87850 4.38853 4.57522 4.82333 4.90652 4.97111 5.04218 5.13043 5.14542 5.17981 5.34515 5.49740 5.58851 5.67533 5.71488 5.93342 5.96718 5.96870 6.01111 6.07951 6.12091 6.16336 6.30284 6.41547 6.48574 6.56412 6.64908 6.66358 6.87585 7.01907 7.06480 7.10744 7.68273 8.22158 8.49002 8.91769 9.49276 10.98575 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.004103 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.587732 B = 6821.907038 C = 7880.380094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.260 1.260 6 H -0.291 1.291 7 C -0.481 4.481 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.109 3.891 11 O -0.325 6.325 12 C 0.526 3.474 13 O -0.500 6.500 14 C -0.257 4.257 15 S 0.287 5.713 16 C -0.242 4.242 17 C -0.144 4.144 18 C 0.019 3.981 19 C -0.035 4.035 20 C -0.052 4.052 21 C -0.124 4.124 22 C -0.114 4.114 23 C -0.131 4.131 24 C -0.100 4.100 25 C -0.173 4.173 26 C -0.189 4.189 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.046 0.954 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -8.745 -13.546 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.184 1.184 6 H -0.218 1.218 7 C -0.518 4.518 8 H 0.100 0.900 9 C -0.006 4.006 10 C 0.035 3.965 11 O -0.240 6.240 12 C 0.371 3.629 13 O -0.392 6.392 14 C -0.376 4.376 15 S 0.559 5.441 16 C -0.381 4.381 17 C -0.175 4.175 18 C 0.003 3.997 19 C -0.037 4.037 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.132 4.132 23 C -0.150 4.150 24 C -0.119 4.119 25 C -0.210 4.210 26 C -0.227 4.227 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.189 0.811 31 H 0.163 0.837 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.655 -8.825 -12.272 18.494 hybrid contribution 1.268 1.462 -1.215 2.285 sum 11.923 -7.364 -13.487 19.450 Atomic orbital electron populations 1.69885 1.06260 1.27077 1.50004 1.24974 0.94611 0.98882 0.94009 0.86936 0.80728 0.83732 0.78470 1.20255 1.18419 1.21796 1.20214 0.85966 0.94693 1.50912 0.90043 1.19331 0.95628 1.01054 0.84551 1.22673 0.97606 0.84124 0.92145 1.86237 1.63497 1.44695 1.29590 1.18492 0.79390 0.83998 0.81057 1.90890 1.31982 1.42340 1.73987 1.22879 1.11766 1.03663 0.99249 1.83682 1.39123 1.10915 1.10401 1.25430 1.05031 1.06133 1.01456 1.19863 1.00962 0.94500 1.02126 1.18271 0.95905 0.94497 0.91033 1.18234 0.94360 0.92415 0.98730 1.21114 0.99340 0.91830 0.94807 1.21033 0.94823 0.99592 0.98796 1.21173 0.97001 0.95622 0.99424 1.20951 0.99586 0.93443 1.00977 1.21085 0.93634 0.99562 0.97609 1.22827 1.01031 0.92578 1.04608 1.22992 1.01227 0.95481 1.02965 0.92519 0.91702 0.93619 0.81108 0.83698 0.86278 0.86068 0.86342 0.86171 0.86123 0.89100 0.90866 0.90750 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.87 21.44 24.93 -169.99 -4.24 17.20 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.26 -6.09 5.67 56.52 0.32 -5.77 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.48 -13.26 9.36 -34.44 -0.32 -13.58 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.00 -0.11 1.04 -155.66 -0.16 -0.27 16 10 C 0.11 2.42 4.88 37.16 0.18 2.60 16 11 O -0.32 -6.98 9.81 -41.15 -0.40 -7.38 16 12 C 0.53 10.25 7.46 32.11 0.24 10.49 16 13 O -0.50 -10.28 12.58 -19.39 -0.24 -10.52 16 14 C -0.26 -4.19 6.28 -38.30 -0.24 -4.43 16 15 S 0.29 3.80 22.83 -107.50 -2.45 1.35 16 16 C -0.24 -2.48 10.88 29.05 0.32 -2.17 16 17 C -0.14 -1.61 9.85 -41.15 -0.41 -2.01 16 18 C 0.02 0.27 5.44 -105.81 -0.58 -0.30 16 19 C -0.04 -0.51 4.93 -104.91 -0.52 -1.03 16 20 C -0.05 -0.80 7.24 -39.22 -0.28 -1.08 16 21 C -0.12 -1.64 10.03 -39.64 -0.40 -2.04 16 22 C -0.11 -1.30 10.04 -39.50 -0.40 -1.70 16 23 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 24 C -0.10 -1.22 9.64 -39.22 -0.38 -1.60 16 25 C -0.17 -3.53 9.96 -26.69 -0.27 -3.79 16 26 C -0.19 -3.99 7.57 -26.69 -0.20 -4.19 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.06 1.52 6.68 -51.93 -0.35 1.17 16 29 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 30 H 0.17 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.96 7.31 -52.49 -0.38 1.58 16 33 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 2.04 7.28 -51.93 -0.38 1.66 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -31.60 352.39 -10.12 -41.72 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.96 Total: 3.23 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.90 Total: -24.84 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.65 Total: -17.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.24 Total: 17.20 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -2.45 Total: 1.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.60 -10.12 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174749524.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.871 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds