Wall clock time and date at job start Tue Mar 31 2020 16:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47362 * 2 1 4 4 O 1.45201 * 109.47060 * 240.00268 * 2 1 3 5 5 C 1.34701 * 117.00309 * 90.00314 * 4 2 1 6 6 O 1.21470 * 119.99827 * 359.97438 * 5 4 2 7 7 C 1.47744 * 120.00299 * 180.02562 * 5 4 2 8 8 C 1.39726 * 120.10506 * 359.71500 * 7 5 4 9 9 C 1.38024 * 120.03440 * 179.76722 * 8 7 5 10 10 C 1.38191 * 120.24691 * 0.51978 * 9 8 7 11 11 C 1.39186 * 120.21502 * 359.73299 * 10 9 8 12 12 S 1.76199 * 120.01859 * 179.97438 * 11 10 9 13 13 C 1.76201 * 99.99919 * 265.53361 * 12 11 10 14 14 H 1.07994 * 120.00267 * 5.11946 * 13 12 11 15 15 C 1.38730 * 119.99623 * 185.12133 * 13 12 11 16 16 N 1.31628 * 120.00263 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99667 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47042 * 60.00121 * 17 15 13 19 19 H 1.48504 * 109.46889 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47354 * 299.99667 * 17 15 13 21 21 C 1.38865 * 119.96083 * 0.02562 * 11 10 9 22 22 C 1.50703 * 109.47140 * 119.99985 * 2 1 3 23 23 C 1.38234 * 119.99779 * 84.72827 * 22 2 1 24 24 C 1.38238 * 119.99983 * 179.79072 * 23 22 2 25 25 C 1.38239 * 119.99441 * 0.43534 * 24 23 22 26 26 C 1.38235 * 120.00440 * 359.81849 * 25 24 23 27 27 C 1.38232 * 119.99844 * 359.97400 * 26 25 24 28 28 H 1.08997 * 109.47103 * 300.00102 * 1 2 3 29 29 H 1.09004 * 109.46832 * 60.00109 * 1 2 3 30 30 H 1.09000 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.98229 * 0.02562 * 8 7 5 32 32 H 1.08001 * 119.87682 * 180.23049 * 9 8 7 33 33 H 1.08000 * 119.89179 * 179.76495 * 10 9 8 34 34 H 0.96994 * 119.99843 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.12272 * 180.02562 * 21 11 10 36 36 H 1.08000 * 120.00304 * 359.97438 * 23 22 2 37 37 H 1.07993 * 120.00423 * 180.27228 * 24 23 22 38 38 H 1.07999 * 119.99735 * 179.83372 * 25 24 23 39 39 H 1.07994 * 119.99999 * 179.97438 * 26 25 24 40 40 H 1.07994 * 120.00343 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2179 0.0667 -2.2850 6 8 1.9970 1.2607 -2.2543 7 6 2.7092 -0.5619 -3.5285 8 6 2.9687 -1.9344 -3.5649 9 6 3.4230 -2.5209 -4.7288 10 6 3.6334 -1.7538 -5.8588 11 6 3.3834 -0.3848 -5.8326 12 16 3.6541 0.5885 -7.2761 13 6 5.2919 1.1562 -6.9596 14 1 5.8319 0.7938 -6.0974 15 6 5.8876 2.0689 -7.8179 16 7 5.2296 2.5104 -8.8690 17 14 7.6236 2.6713 -7.4819 18 1 8.5571 1.5164 -7.4822 19 1 8.0269 3.6334 -8.5388 20 1 7.6671 3.3427 -6.1581 21 6 2.9213 0.2136 -4.6678 22 6 2.0324 -0.7104 1.2305 23 6 2.1590 -2.0869 1.2305 24 6 2.6239 -2.7383 2.3577 25 6 2.9536 -2.0137 3.4879 26 6 2.8219 -0.6377 3.4897 27 6 2.3611 0.0140 2.3610 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.8096 -2.5373 -2.6830 32 1 3.6192 -3.5826 -4.7551 33 1 3.9927 -2.2181 -6.7653 34 1 5.6463 3.1482 -9.4693 35 1 2.7260 1.2755 -4.6446 36 1 1.8976 -2.6533 0.3489 37 1 2.7271 -3.8133 2.3563 38 1 3.3142 -2.5228 4.3695 39 1 3.0791 -0.0717 4.3728 40 1 2.2586 1.0890 2.3622 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175533805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:49 Heat of formation + Delta-G solvation = -58.229179 kcal Electronic energy + Delta-G solvation = -23709.230582 eV Core-core repulsion = 20158.072308 eV Total energy + Delta-G solvation = -3551.158274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.092 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.87399 -40.26928 -39.50909 -37.68426 -34.66084 -34.21155 -32.35722 -31.98768 -31.80405 -30.23765 -27.75121 -26.16930 -24.64388 -23.79750 -23.52393 -22.26767 -21.48406 -20.07824 -19.08780 -18.51553 -17.69351 -17.17917 -16.95882 -16.93075 -16.50297 -16.10257 -15.90458 -15.57972 -15.16295 -14.85981 -14.68898 -14.61383 -14.27350 -14.17328 -13.89909 -13.51453 -13.26941 -13.19929 -13.12860 -12.96849 -12.75598 -12.64402 -12.42842 -12.16350 -11.86563 -11.80262 -11.76573 -11.59598 -11.22563 -10.81192 -10.08908 -9.84100 -9.75682 -9.74165 -8.82208 -8.40128 -6.20439 -0.38332 0.19199 0.30731 0.48466 1.26965 1.38210 1.39653 1.41490 1.46982 1.69746 2.22641 2.68363 2.83659 2.93160 3.39519 3.41368 3.59031 3.86433 3.88522 4.00207 4.05152 4.13924 4.17370 4.28482 4.29902 4.38708 4.51985 4.59059 4.61424 4.69770 4.76393 4.84965 4.99128 5.07264 5.09906 5.18177 5.20081 5.30493 5.37642 5.44110 5.54040 5.61163 5.63883 5.79197 6.07000 6.14847 6.58333 7.00428 8.66696 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.016677 B = 0.002601 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.522339 B =10762.924602 C =11183.356614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.079 0.921 4 O -0.335 6.335 5 C 0.519 3.481 6 O -0.538 6.538 7 C -0.149 4.149 8 C -0.042 4.042 9 C -0.125 4.125 10 C -0.049 4.049 11 C -0.132 4.132 12 S -0.087 6.087 13 C -0.539 4.539 14 H 0.068 0.932 15 C 0.021 3.979 16 N -0.905 5.905 17 Si 0.990 3.010 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.035 4.035 22 C -0.105 4.105 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.121 4.121 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.274 0.726 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 -13.472 24.245 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.097 0.903 4 O -0.252 6.252 5 C 0.365 3.635 6 O -0.429 6.429 7 C -0.152 4.152 8 C -0.060 4.060 9 C -0.144 4.144 10 C -0.069 4.069 11 C -0.243 4.243 12 S 0.148 5.852 13 C -0.686 4.686 14 H 0.086 0.914 15 C -0.184 4.184 16 N -0.542 5.542 17 Si 0.812 3.188 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.056 4.056 22 C -0.105 4.105 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.139 4.139 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.188 0.812 32 H 0.196 0.804 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.938 -12.757 23.174 27.348 hybrid contribution 1.474 1.037 0.668 1.923 sum -5.464 -11.720 23.842 27.123 Atomic orbital electron populations 1.22158 0.91860 1.04048 1.03434 1.21611 0.95672 0.95813 0.79996 0.90340 1.86554 1.77101 1.41586 1.19959 1.21265 0.73454 0.84670 0.84103 1.90811 1.49915 1.17440 1.84712 1.19170 1.09448 0.95955 0.90646 1.21822 0.92730 0.91827 0.99667 1.21602 0.99632 1.01978 0.91162 1.22190 0.93018 0.91850 0.99882 1.22478 1.04460 0.98370 0.99040 1.83514 1.21179 1.59830 1.20696 1.23049 0.99416 1.31308 1.14806 0.91374 1.25987 1.03412 0.94892 0.94147 1.70094 1.39372 1.30764 1.13931 0.85123 0.76952 0.78506 0.78234 1.18514 1.19580 1.19574 1.21667 0.93422 0.99365 0.91165 1.19608 1.02376 0.94870 0.93627 1.21193 0.98540 0.93442 0.99176 1.21496 0.98702 1.01310 0.92839 1.21584 0.98764 0.94300 0.99093 1.21414 0.99208 0.95288 0.98380 1.21166 0.99132 1.00501 0.93060 0.88797 0.92896 0.90241 0.81165 0.80439 0.84087 0.91655 0.87168 0.84987 0.83683 0.83559 0.83735 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.53 71.98 0.69 -2.33 16 2 C 0.12 2.83 2.78 29.85 0.08 2.92 16 3 H 0.08 2.05 7.07 -2.39 -0.02 2.03 16 4 O -0.34 -8.84 8.28 -56.10 -0.46 -9.31 16 5 C 0.52 17.32 7.87 70.34 0.55 17.88 16 6 O -0.54 -21.32 15.60 19.93 0.31 -21.01 16 7 C -0.15 -5.07 5.87 -20.12 -0.12 -5.18 16 8 C -0.04 -1.08 9.62 22.58 0.22 -0.86 16 9 C -0.12 -3.09 10.02 22.21 0.22 -2.86 16 10 C -0.05 -1.66 9.79 22.49 0.22 -1.44 16 11 C -0.13 -5.76 5.45 22.65 0.12 -5.64 16 12 S -0.09 -4.69 21.41 -56.49 -1.21 -5.90 16 13 C -0.54 -31.35 9.46 67.94 0.64 -30.71 16 14 H 0.07 3.92 7.79 -2.91 -0.02 3.89 16 15 C 0.02 1.20 5.49 84.84 0.47 1.67 16 16 N -0.91 -54.32 13.22 21.64 0.29 -54.03 16 17 Si 0.99 44.41 29.55 68.60 2.03 46.44 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 C -0.03 -1.47 9.34 22.71 0.21 -1.26 16 22 C -0.10 -2.05 5.01 -19.86 -0.10 -2.15 16 23 C -0.11 -1.83 9.35 22.27 0.21 -1.62 16 24 C -0.13 -1.73 10.05 22.27 0.22 -1.50 16 25 C -0.12 -1.50 10.05 22.27 0.22 -1.27 16 26 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 27 C -0.12 -2.07 9.68 22.27 0.22 -1.85 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.17 3.05 7.61 -2.91 -0.02 3.03 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 34 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 35 H 0.11 5.18 7.65 -2.91 -0.02 5.15 16 36 H 0.13 2.10 7.63 -2.91 -0.02 2.07 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -73.05 367.62 6.30 -66.75 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 1.04 Total: 14.80 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.30 Total: -37.73 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.29 Total: -54.03 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.15 Total: -30.32 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -1.21 Total: -5.90 kcal Total: -73.05 6.30 -66.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175533805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.517 kcal (2) G-P(sol) polarization free energy of solvation -73.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds